Genetic and molecular dissection of naturally occurring variation.

Recent progress in plant genome analysis has made it possible to examine the naturally occurring allelic variation underlying complex traits. Many studies have described the genetic mapping of quantitative trait loci for several kinds of complex phenotypic traits. Some researchers have taken up the challenge of performing the molecular cloning of genes at these loci, and examples of cloning have recently been reported. Naturally occurring allelic variation could be a new resource for the functional analysis of plant genes.

[1]  R. Phillips,et al.  Fine mapping and characterization of linked quantitative trait loci involved in the transition of the maize apical meristem from vegetative to generative structures. , 1999, Genetics.

[2]  G. Martin,et al.  Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. , 1995, Trends in genetics : TIG.

[3]  J. Doebley,et al.  Teosinte glume architecture 1: A Genetic Locus Controlling a Key Step in Maize Evolution , 1993, Science.

[4]  M. Yano,et al.  Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS , 2000, Plant Cell.

[5]  P. Waterhouse,et al.  Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[6]  D. Marshall,et al.  Towards developing intervarietal substitution lines in Brassica napus using marker-assisted selection. , 1996, Genome.

[7]  A. Rohde,et al.  Quantitative trait loci and candidate gene mapping of bud set and bud flush in populus. , 2000, Genetics.

[8]  K. Doi,et al.  RFLP Mapping and QTL Analysis of Heading Date and Pollen Sterility Using Backcross Populations between Oryza sativa L. and Oryza glaberrima Steud. , 1998 .

[9]  S. Tanksley,et al.  High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2: a major fruit weight quantitative trait locus in tomato. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[10]  T. Kubo Development of a series of Indica chromosome segment substitution lines in Japonica background of rice , 1999 .

[11]  E. Meyerowitz,et al.  Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[12]  J E Cutting,et al.  Visual flow and direction of locomotion. , 1985, Science.

[13]  M. Yano,et al.  Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice using advanced backcross progeny. , 2000, Genetics.

[14]  S. Tanksley,et al.  Seed banks and molecular maps: unlocking genetic potential from the wild. , 1997, Science.

[15]  B. Burr,et al.  International Rice Genome Sequencing Project: the effort to completely sequence the rice genome. , 2000, Current opinion in plant biology.

[16]  S. Tanksley,et al.  The genetic basis of seed-weight variation: tomato as a model system , 2000, Theoretical and Applied Genetics.

[17]  S. Tanksley,et al.  Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecies cross of tomato. , 1990, Genetics.

[18]  M Koornneef,et al.  Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. , 2000, Trends in plant science.

[19]  J. Doebley,et al.  The evolution of apical dominance in maize , 1997, Nature.

[20]  M. Trick,et al.  Comparison of flowering time genes in Brassica rapa, B. napus and Arabidopsis thaliana. , 1997, Genetics.

[21]  P. Jong,et al.  Construction and characterization of rice genomic libraries: PAC library of Japonica variety, Nipponbare and BAC library of Indica variety, Kasalath. , 2000 .

[22]  V. Lefebvre,et al.  Disease resistance gene analogs as candidates for QTLs involved in pepper-pathogen interactions. , 1999, Genome.

[23]  S. Tanksley,et al.  Advanced backcross QTL analysis in a cross between an elite processing line of tomato and its wild relative L. pimpinellifolium , 1996, Theoretical and Applied Genetics.

[24]  S. Lin,et al.  Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlling heading date of rice, as single Mendelian factors , 1998, Theoretical and Applied Genetics.

[25]  Jody Hey,et al.  The limits of selection during maize domestication , 1999, Nature.

[26]  T. C. Nesbitt,et al.  fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. , 2000, Science.

[27]  P. Thoquet,et al.  Inheritance of partial resistance against Colletotrichum lindemuthianum in Phaseolus vulgaris and co-localization of quantitative trait loci with genes involved in specific resistance. , 2000, Molecular plant-microbe interactions : MPMI.

[28]  S. Lin,et al.  Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines , 1998, Theoretical and Applied Genetics.

[29]  M. Yano,et al.  Genetic and molecular dissection of quantitative traits in rice , 1997, Plant Molecular Biology.

[30]  M. Yano,et al.  Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map , 1997, Theoretical and Applied Genetics.

[31]  E. Fridman,et al.  A recombination hotspot delimits a wild-species quantitative trait locus for tomato sugar content to 484 bp within an invertase gene. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[32]  S. Lin,et al.  A high-density rice genetic linkage map with 2275 markers using a single F2 population. , 1998, Genetics.

[33]  D. Zamir,et al.  An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. , 1995, Genetics.

[34]  T. Richmond,et al.  Chasing the dream: plant EST microarrays. , 2000, Current opinion in plant biology.

[35]  A. Paterson,et al.  Molecular dissection of quantitative traits: progress and prospects. , 1995, Genome research.

[36]  S. Tanksley,et al.  Saturated molecular map of the rice genome based on an interspecific backcross population. , 1994, Genetics.

[37]  B. R. Wiseman,et al.  Quantitative trait loci and metabolic pathways. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[38]  L. Xiong,et al.  Identification of genetic factors controlling domestication-related traits of rice using an F2 population of a cross between Oryza sativa and O. rufipogon , 1999, Theoretical and Applied Genetics.

[39]  M. Yano,et al.  Characterization and detection of epistatic interactions of 3 QTLs, Hd1, Hd2, and Hd3, controlling heading date in rice using nearly isogenic lines , 2000, Theoretical and Applied Genetics.

[40]  M. Yano,et al.  RFLP Framework Map Using Recombinant Inbred Lines in Rice , 1996 .

[41]  R. Amasino,et al.  Natural allelic variation identifies new genes in the Arabidopsis circadian system. , 1999, The Plant journal : for cell and molecular biology.

[42]  W. Lukowitz,et al.  Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. , 2000, Plant physiology.