Leveraging the Contribution of Thermodynamics in Drug Discovery with the Help of Fluorescence-Based Thermal Shift Assays

The development of new drugs with better pharmacological and safety properties mandates the optimization of several parameters. Today, potency is often used as the sole biochemical parameter to identify and select new molecules. Surprisingly, thermodynamics, which is at the core of any interaction, is rarely used in drug discovery, even though it has been suggested that the selection of scaffolds according to thermodynamic criteria may be a valuable strategy. This poor integration of thermodynamics in drug discovery might be due to difficulties in implementing calorimetry experiments despite recent technological progress in this area. In this report, the authors show that fluorescence-based thermal shift assays could be used as prescreening methods to identify compounds with different thermodynamic profiles. This approach allows a reduction in the number of compounds to be tested in calorimetry experiments, thus favoring greater integration of thermodynamics in drug discovery.

[1]  C. Supuran,et al.  Inhibition and binding studies of carbonic anhydrase isozymes I, II and IX with benzimidazo[1,2-c][1,2,3]thiadiazole-7-sulphonamides , 2010, Journal of enzyme inhibition and medicinal chemistry.

[2]  I. Kariv,et al.  Discovery of PDK1 Kinase Inhibitors with a Novel Mechanism of Action by Ultrahigh Throughput Screening , 2010, The Journal of Biological Chemistry.

[3]  D. Erdmann,et al.  Simultaneous protein expression and modification: an efficient approach for production of unphosphorylated and biotinylated receptor tyrosine kinases by triple infection in the baculovirus expression system. , 2010, Journal of biomolecular techniques : JBT.

[4]  J. Dalton,et al.  Fluorobenzoyl dipeptidyl derivatives as inhibitors of the Fasciola hepatica cysteine protease cathepsin L1 , 2010, Journal of enzyme inhibition and medicinal chemistry.

[5]  M. Doyle,et al.  Assessing compound binding to the Eg5 motor domain using a thermal shift assay. , 2009, Analytical biochemistry.

[6]  Rongshi Li,et al.  Inhibition of the insulin-like growth factor-1 receptor (IGF1R) tyrosine kinase as a novel cancer therapy approach. , 2009, Journal of medicinal chemistry.

[7]  D. Boger,et al.  Correlation of inhibitor effects on enzyme activity and thermal stability for the integral membrane protein fatty acid amide hydrolase. , 2008, Bioorganic & medicinal chemistry letters.

[8]  Piotras Cimmperman,et al.  A quantitative model of thermal stabilization and destabilization of proteins by ligands. , 2008, Biophysical journal.

[9]  E. Freire Do enthalpy and entropy distinguish first in class from best in class? , 2008, Drug discovery today.

[10]  M. Vedadi,et al.  Application of High-Throughput Isothermal Denaturation to Assess Protein Stability and Screen for Ligands , 2008, Journal of biomolecular screening.

[11]  J. Chaires,et al.  Calorimetry and thermodynamics in drug design. , 2008, Annual review of biophysics.

[12]  R. Copeland,et al.  Residence time of receptor-ligand complexes and its effect on biological function. , 2008, Biochemistry.

[13]  F. Niesen,et al.  The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability , 2007, Nature Protocols.

[14]  Maxwell D Cummings,et al.  Universal Screening Methods and Applications of ThermoFluor® , 2006, Journal of biomolecular screening.

[15]  R. Copeland,et al.  Drug–target residence time and its implications for lead optimization , 2006, Nature Reviews Drug Discovery.

[16]  B. Shoichet Screening in a spirit haunted world. , 2006, Drug discovery today.

[17]  G. Vauquelin,et al.  Slow antagonist dissociation and long-lasting in vivo receptor protection. , 2006, Trends in pharmacological sciences.

[18]  E. Freire,et al.  Overcoming Roadblocks in Lead Optimization: A Thermodynamic Perspective , 2006, Chemical biology & drug design.

[19]  G. Holdgate,et al.  Measurements of binding thermodynamics in drug discovery. , 2005, Drug discovery today.

[20]  Daumantas Matulis,et al.  Thermodynamic stability of carbonic anhydrase: measurements of binding affinity and stoichiometry using ThermoFluor. , 2005, Biochemistry.

[21]  Jonathan Bard,et al.  Evaluation of fluorescence-based thermal shift assays for hit identification in drug discovery. , 2004, Analytical biochemistry.

[22]  K. P. Murphy,et al.  Stabilization of proteins by ligand binding: application to drug screening and determination of unfolding energetics. , 2003, Biochemistry.

[23]  Victor S. Lobanov,et al.  High-Density Miniaturized Thermal Shift Assays as a General Strategy for Drug Discovery , 2001 .

[24]  Chuan Yi Tang,et al.  A 2.|E|-Bit Distributed Algorithm for the Directed Euler Trail Problem , 1993, Inf. Process. Lett..

[25]  Joseph D. Kwasnoski,et al.  High-density miniaturized thermal shift assays as a general strategy for drug discovery. , 2001, Journal of biomolecular screening.