STaRRRT: a table of short tandem repeats in regulatory regions of the human genome

[1]  Michael A. Black,et al.  Microsatellite Tandem Repeats Are Abundant in Human Promoters and Are Associated with Regulatory Elements , 2013, PloS one.

[2]  G. Highnam,et al.  Accurate human microsatellite genotypes from high-throughput resequencing data using informed error profiles , 2012, Nucleic acids research.

[3]  M. Ohadi,et al.  Evolutionary trend of exceptionally long human core promoter short tandem repeats. , 2012, Gene.

[4]  S. Rosset,et al.  lobSTR: A short tandem repeat profiler for personal genomes , 2012, RECOMB.

[5]  Kihoon Yoon,et al.  Before It Gets Started: Regulating Translation at the 5′ UTR , 2012, Comparative and functional genomics.

[6]  N. Gemmell,et al.  Measuring Microsatellite Conservation in Mammalian Evolution with a Phylogenetic Birth–Death Model , 2012, Genome biology and evolution.

[7]  J. Gulcher Microsatellite markers for linkage and association studies. , 2012, Cold Spring Harbor protocols.

[8]  S. Hosseinkhani,et al.  Core promoter STRs: novel mechanism for inter-individual variation in gene expression in humans. , 2012, Gene.

[9]  Tatiana A. Tatusova,et al.  NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy , 2011, Nucleic Acids Res..

[10]  Anthony J. Hannan Tandem repeat polymorphisms : genetic plasticity, neural diversity and disease , 2012 .

[11]  N. Gemmell,et al.  Promoter microsatellites as modulators of human gene expression. , 2012, Advances in experimental medicine and biology.

[12]  Kevin J. Verstrepen,et al.  Nucleosome Positioning in Saccharomyces cerevisiae , 2011, Microbiology and Molecular Reviews.

[13]  Peter Falkai,et al.  A CAG repeat polymorphism of KCNN3 predicts SK3 channel function and cognitive performance in schizophrenia , 2011, EMBO molecular medicine.

[14]  Ryan J. Haasl,et al.  A genomic portrait of human microsatellite variation. , 2011, Molecular biology and evolution.

[15]  Matthieu Legendre,et al.  Variable tandem repeats accelerate evolution of coding and regulatory sequences. , 2010, Annual review of genetics.

[16]  Christiana Kartsonaki,et al.  A locus on 19p13 modifies risk of breast cancer in BRCA1 mutation carriers and is associated with hormone receptor–negative breast cancer in the general population , 2010, Nature Genetics.

[17]  Wlodzimierz J. Krzyzosiak,et al.  Trinucleotide repeats in human genome and exome , 2010, Nucleic acids research.

[18]  A. Hannan Tandem repeat polymorphisms: modulators of disease susceptibility and candidates for 'missing heritability'. , 2010, Trends in genetics : TIG.

[19]  Katsuhiko Murakami,et al.  H-InvDB in 2009: extended database and data mining resources for human genes and transcripts , 2009, Nucleic Acids Res..

[20]  Judy H. Cho,et al.  Finding the missing heritability of complex diseases , 2009, Nature.

[21]  F. Hu,et al.  Association between heme oxygenase-1 gene promoter polymorphisms and type 2 diabetes in a Chinese population. , 2009, American journal of epidemiology.

[22]  Matthieu Legendre,et al.  Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability , 2009, Science.

[23]  R. Scott,et al.  IGF1 is a modifier of disease risk in hereditary non‐polyposis colorectal cancer , 2008, International journal of cancer.

[24]  D. King,et al.  Simple sequence repeats: genetic modulators of brain function and behavior , 2008, Trends in Neurosciences.

[25]  Liqing Zhang,et al.  Housekeeping and tissue-specific genes differ in simple sequence repeats in the 5'-UTR region. , 2008, Gene.

[26]  N. Pochet,et al.  Sequence-based estimation of minisatellite and microsatellite repeat variability. , 2007, Genome research.

[27]  Olivier Fedrigo,et al.  Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution , 2007, Nature Genetics.

[28]  I. Albert,et al.  Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome , 2007, Nature.

[29]  D. Brutlag,et al.  A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[30]  C. Amos,et al.  IGF1 gene polymorphism and risk for hereditary nonpolyposis colorectal cancer. , 2006, Journal of the National Cancer Institute.

[31]  R. Myers,et al.  Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome. , 2005, Genome research.

[32]  Fran Lewitter,et al.  Intragenic tandem repeats generate functional variability , 2005, Nature Genetics.

[33]  Marek Napierala,et al.  Advances in mechanisms of genetic instability related to hereditary neurological diseases , 2005, Nucleic acids research.

[34]  Sandrine Caburet,et al.  Coding repeats and evolutionary "agility". , 2005, BioEssays : news and reviews in molecular, cellular and developmental biology.

[35]  K. Nakai,et al.  Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity. , 2005, Gene.

[36]  L. Abraham,et al.  Polymorphism of the CD30 Promoter Microsatellite Repressive Element Is Associated with Development of Primary Cutaneous Lymphoproliferative Disorders , 2005, Cancer Epidemiology Biomarkers & Prevention.

[37]  Niclas Jareborg,et al.  Genome-wide prediction of human VNTRs. , 2005, Genomics.

[38]  H. Garner,et al.  Molecular origins of rapid and continuous morphological evolution , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[39]  J. Mellor,et al.  Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1. , 2004, Molecular cell.

[40]  H. Ellegren Microsatellites: simple sequences with complex evolution , 2004, Nature Reviews Genetics.

[41]  E. Nevo,et al.  Microsatellites within genes: structure, function, and evolution. , 2004, Molecular biology and evolution.

[42]  A. Danchin,et al.  Bmc Genomics , 2004 .

[43]  J. Mattick The human genome and the future of medicine , 2003, The Medical journal of Australia.

[44]  J. T. Kadonaga,et al.  The RNA polymerase II core promoter: a key component in the regulation of gene expression. , 2002, Genes & development.

[45]  W. Pan,et al.  Microsatellite polymorphism in promoter of heme oxygenase-1 gene is associated with susceptibility to coronary artery disease in type 2 diabetic patients , 2002, Human Genetics.

[46]  Tom H. Pringle,et al.  The human genome browser at UCSC. , 2002, Genome research.

[47]  International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome , 2001, Nature.

[48]  M. Berridge,et al.  The versatility and universality of calcium signalling , 2000, Nature Reviews Molecular Cell Biology.

[49]  W. Robberecht,et al.  Abnormal intracellular ca(2+)homeostasis and disease. , 2000, Cell calcium.

[50]  D. Metzgar,et al.  Selection against frameshift mutations limits microsatellite expansion in coding DNA. , 2000, Genome research.

[51]  A. Nicolas,et al.  Meiotic instability of human minisatellite CEB1 in yeast requires DNA double-strand breaks , 1999, Nature Genetics.

[52]  G. Benson,et al.  Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.

[53]  B Brinkmann,et al.  Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat. , 1998, American journal of human genetics.

[54]  P. Kantoff,et al.  The CAG repeat within the androgen receptor gene and its relationship to prostate cancer. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[55]  J. Stanford,et al.  Polymorphic repeats in the androgen receptor gene: molecular markers of prostate cancer risk. , 1997, Cancer research.

[56]  G. Coetzee,et al.  Association of prostate cancer risk with genetic polymorphisms in vitamin D receptor and androgen receptor. , 1997, Journal of the National Cancer Institute.

[57]  K. Lesch,et al.  Association of Anxiety-Related Traits with a Polymorphism in the Serotonin Transporter Gene Regulatory Region , 1996, Science.

[58]  G. Goodwin,et al.  Polymorphism in serotonin transporter gene associated with susceptibility to major depression , 1996, The Lancet.

[59]  J. Weber,et al.  Mutation of human short tandem repeats. , 1993, Human molecular genetics.

[60]  Manish S. Shah,et al.  A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes , 1993, Cell.

[61]  G. Schroth,et al.  Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. , 1992, The Journal of biological chemistry.

[62]  K. Fischbeck,et al.  Androgen receptor gene mutations in X-linked spinal and bulbar muscular atrophy , 1991, Nature.

[63]  J. Sutcliffe,et al.  Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome , 1991, Cell.