Escherichia coli Resistance to Nonbiocidal Antibiofilm Polysaccharides Is Rare and Mediated by Multiple Mutations Leading to Surface Physicochemical Modifications

ABSTRACT Antivirulence strategies targeting bacterial behavior, such as adhesion and biofilm formation, are expected to exert low selective pressure and have been proposed as alternatives to biocidal antibiotic treatments to avoid the rapid occurrence of bacterial resistance. Here, we tested this hypothesis using group 2 capsule polysaccharide (G2cps), a polysaccharidic molecule previously shown to impair bacterium-surface interactions, and we investigated the nature of bacterial resistance to a nonbiocidal antibiofilm strategy. We screened an Escherichia coli mutant library for an increased ability to form biofilm in the presence of G2cps, and we identified several mutants displaying partial but not total resistance to this antibiofilm polysaccharide. Our genetic analysis showed that partial resistance to G2cps results from multiple unrelated mutations leading to modifications in surface physicochemical properties that counteract the changes in ionic charge and Lewis base properties induced by G2cps. Moreover, some of the identified mutants harboring improved biofilm formation in the presence of G2cps were also partially resistant to other antibiofilm molecules. This study therefore shows that alterations of bacterial surface properties mediate only partial resistance to G2cps. It also experimentally validates the potential value of nonbiocidal antibiofilm strategies, since full resistance to antibiofilm compounds is rare and potentially unlikely to arise in clinical settings.

[1]  Dominik Wodarz,et al.  Drug resistance in cancer: principles of emergence and prevention. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[2]  C. d’Enfert,et al.  A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans. , 2000, Nucleic acids research.

[3]  G. S. Kiran,et al.  Biofilm disruption potential of a glycolipid biosurfactant from marine Brevibacterium casei. , 2010, FEMS immunology and medical microbiology.

[4]  Thierry Fontaine,et al.  Broad-spectrum biofilm inhibition by a secreted bacterial polysaccharide , 2006, Proceedings of the National Academy of Sciences.

[5]  J. Ghigo,et al.  Multi-species biofilms: how to avoid unfriendly neighbors. , 2012, FEMS microbiology reviews.

[6]  Thierry Fontaine,et al.  Screening of Escherichia coli Species Biodiversity Reveals New Biofilm-Associated Antiadhesion Polysaccharides , 2011, mBio.

[7]  M Cristina L Martins,et al.  Covalent immobilization of antimicrobial peptides (AMPs) onto biomaterial surfaces. , 2011, Acta biomaterialia.

[8]  H. Ceri,et al.  Anti-adhesion activity of two biosurfactants produced by Bacillus spp. prevents biofilm formation of human bacterial pathogens , 2009, Applied Microbiology and Biotechnology.

[9]  Yoshimitsu Mizunoe,et al.  Staphylococcus epidermidis Esp inhibits Staphylococcus aureus biofilm formation and nasal colonization , 2010, Nature.

[10]  D. Lebeaux,et al.  A Rat Model of Central Venous Catheter to Study Establishment of Long-Term Bacterial Biofilm and Related Acute and Chronic Infections , 2012, PloS one.

[11]  R. Camerini-Otero,et al.  Characterization of the DNA Damage-inducible Helicase DinG from Escherichia coli* , 2003, Journal of Biological Chemistry.

[12]  Leo Eberl,et al.  Inhibition of quorum sensing in Pseudomonas aeruginosa biofilm bacteria by a halogenated furanone compound. , 2002, Microbiology.

[13]  I. Paulsen,et al.  Major Facilitator Superfamily , 1998, Microbiology and Molecular Biology Reviews.

[14]  J. Coppee,et al.  Starvation, Together with the SOS Response, Mediates High Biofilm-Specific Tolerance to the Fluoroquinolone Ofloxacin , 2013, PLoS genetics.

[15]  D. Mazel,et al.  Silent Mischief: Bacteriophage Mu Insertions Contaminate Products of Escherichia coli Random Mutagenesis Performed Using Suicidal Transposon Delivery Plasmids Mobilized by Broad-Host-Range RP4 Conjugative Machinery , 2010, Journal of bacteriology.

[16]  P. Danese Antibiofilm approaches: prevention of catheter colonization. , 2002, Chemistry & biology.

[17]  D. Hung,et al.  Productive steps toward an antimicrobial targeting virulence. , 2009, Current opinion in microbiology.

[18]  V. Sperandio,et al.  Anti-virulence strategies to combat bacteria-mediated disease , 2010, Nature Reviews Drug Discovery.

[19]  D. Wemmer,et al.  The Rut Pathway for Pyrimidine Degradation: Novel Chemistry and Toxicity Problems , 2010, Journal of bacteriology.

[20]  Martin Schuster,et al.  The Sociomicrobiology of Antivirulence Drug Resistance: a Proof of Concept , 2011, mBio.

[21]  A. Cheung,et al.  Interaction of the GraRS Two-Component System with the VraFG ABC Transporter To Support Vancomycin-Intermediate Resistance in Staphylococcus aureus , 2007, Antimicrobial Agents and Chemotherapy.

[22]  A. Gooley,et al.  Proteomic analysis of the Escherichia coli outer membrane. , 2000, European journal of biochemistry.

[23]  W. Wackernagel,et al.  Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. , 1995, Gene.

[24]  J. Martínez,et al.  A global view of antibiotic resistance. , 2009, FEMS microbiology reviews.

[25]  L. Garcia,et al.  Quorum quenching quandary: resistance to antivirulence compounds , 2011, The ISME Journal.

[26]  Y. Eguchi,et al.  Development of an Antivirulence Drug against Streptococcus mutans: Repression of Biofilm Formation, Acid Tolerance, and Competence by a Histidine Kinase Inhibitor, Walkmycin C , 2011, Antimicrobial Agents and Chemotherapy.

[27]  Thomas Bjarnsholt,et al.  Antibiotic resistance of bacterial biofilms. , 2010, International journal of antimicrobial agents.

[28]  B. Horazdovsky,et al.  Genetic reconstitution of the high-affinity L-arabinose transport system , 1989, Journal of bacteriology.

[29]  Blaise R. Boles,et al.  Rhamnolipids mediate detachment of Pseudomonas aeruginosa from biofilms , 2005, Molecular microbiology.

[30]  J. Ghigo,et al.  Tight Modulation of Escherichia coli Bacterial Biofilm Formation through Controlled Expression of Adhesion Factors , 2007, Applied and Environmental Microbiology.

[31]  H. Berg,et al.  Direct evidence for coupling between bacterial chemoreceptors. , 2008, Journal of molecular biology.

[32]  L. Leibovici,et al.  Combination antimicrobial treatment versus monotherapy: the contribution of meta-analyses. , 2009, Infectious disease clinics of North America.

[33]  J. Brodbelt,et al.  Amino acid addition to Vibrio cholerae LPS establishes a link between surface remodeling in Gram-positive and Gram-negative bacteria , 2012, Proceedings of the National Academy of Sciences.

[34]  L. Peterson,et al.  Highly Reproducible Bactericidal Activity Test Results by Using a Modified National Committee for Clinical Laboratory Standards Broth Macrodilution Technique , 1999, Journal of Clinical Microbiology.

[35]  G R Jacobson,et al.  Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria. , 1993, Microbiological reviews.

[36]  G. Mitchell,et al.  Tomatidine acts in synergy with aminoglycoside antibiotics against multiresistant Staphylococcus aureus and prevents virulence gene expression. , 2012, The Journal of antimicrobial chemotherapy.

[37]  A. Yamaguchi,et al.  The Putative Response Regulator BaeR Stimulates Multidrug Resistance of Escherichia coli via a Novel Multidrug Exporter System, MdtABC , 2002, Journal of bacteriology.

[38]  A. Buckling,et al.  Quorum Sensing Inhibition Selects for Virulence and Cooperation in Pseudomonas aeruginosa , 2010, PLoS pathogens.

[39]  A. Böck,et al.  Novel transcriptional control of the pyruvate formate-lyase gene: upstream regulatory sequences and multiple promoters regulate anaerobic expression , 1989, Journal of bacteriology.

[40]  K. Lewis Multidrug tolerance of biofilms and persister cells. , 2008, Current topics in microbiology and immunology.

[41]  R. Briandet,et al.  Determination of the van der Waals, electron donor and electron acceptor surface tension components of static Gram-positive microbial biofilms. , 2001, Colloids and surfaces. B, Biointerfaces.

[42]  S Bonhoeffer,et al.  Production of resistant HIV mutants during antiretroviral therapy. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[43]  H. Mori,et al.  Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.

[44]  I. Banat,et al.  Microbial biosurfactants production, applications and future potential , 2010, Applied Microbiology and Biotechnology.

[45]  J. Ghigo,et al.  A CsgD-Independent Pathway for Cellulose Production and Biofilm Formation in Escherichia coli , 2006, Journal of bacteriology.

[46]  A. Peschel,et al.  Molecular mechanisms of bacterial resistance to antimicrobial peptides. , 2006, Current topics in microbiology and immunology.

[47]  K. Rudd,et al.  Identification and characterization of RsmE, the founding member of a new RNA base methyltransferase family. , 2006, RNA.

[48]  J. Hacker,et al.  Excision of the high‐pathogenicity island of Yersinia pseudotuberculosis requires the combined actions of its cognate integrase and Hef, a new recombination directionality factor , 2004, Molecular microbiology.

[49]  B. Wanner,et al.  Phosphate-independent expression of the carbon-phosphorus lyase activity of Escherichia coli , 1998, Applied Microbiology and Biotechnology.

[50]  G. Marshall,et al.  The biology and future prospects of antivirulence therapies , 2008, Nature Reviews Microbiology.

[51]  N. Raffaelli,et al.  Monitoring of diguanylate cyclase activity and of cyclic-di-GMP biosynthesis by whole-cell assays suitable for high-throughput screening of biofilm inhibitors , 2009, Applied Microbiology and Biotechnology.

[52]  Krasimir Vasilev,et al.  Antibacterial surfaces for biomedical devices , 2009, Expert review of medical devices.

[53]  E. Ron,et al.  Natural roles of biosurfactants. , 2001, Environmental microbiology.

[54]  F. Smith,et al.  A Colorimetric Method for the Determination of Sugars , 1951, Nature.

[55]  J. Ghigo Natural conjugative plasmids induce bacterial biofilm development , 2001, Nature.

[56]  G. Waksman,et al.  Rationally designed small compounds inhibit pilus biogenesis in uropathogenic bacteria , 2006, Proceedings of the National Academy of Sciences.

[57]  J. Holah,et al.  Changes in the strength of attachment of micro‐organisms to surfaces following treatment with disinfectants and cleansing agents , 1998, Letters in applied microbiology.

[58]  Steve Flint,et al.  Bacterial cell attachment, the beginning of a biofilm , 2007, Journal of Industrial Microbiology & Biotechnology.

[59]  O. Herzberg,et al.  The Escherichia coli YdcF binds S‐adenosyl‐L‐methionine and adopts an α/β‐fold characteristic of nucleotide‐utilizing enzymes , 2008, Proteins.

[60]  Rasika M. Harshey,et al.  Salmonella enterica Serovar Typhimurium Swarming Mutants with Altered Biofilm-Forming Abilities: Surfactin Inhibits Biofilm Formation , 2001, Journal of bacteriology.