Phylogenetic distribution, structural analysis and interaction of nucleotide excision repair proteins in cyanobacteria

[1]  Suresh C. Singh,et al.  Exploration of Novel Lichen Compounds as Inhibitors of SARS-CoV-2 Mpro: Ligand-Based Design, Molecular Dynamics, and ADMET Analyses , 2022, Applied Biochemistry and Biotechnology.

[2]  R. Sinha,et al.  Computational Studies on Photolyase (Phr) Proteins of Cyanobacteria. , 2021, Canadian journal of microbiology.

[3]  S. Iwai,et al.  Enhanced DNA repair by DNA photolyase bearing an artificial light-harvesting chromophore , 2020, Nucleic acids research.

[4]  Rajneesh,et al.  UV-induced DNA damage and repair: A cyanobacterial perspective , 2019, Plant Gene.

[5]  Richa,et al.  Impacts of ultraviolet radiation on certain physiological and biochemical processes in cyanobacteria inhabiting diverse habitats , 2019, Environmental and Experimental Botany.

[6]  Sudhir Kumar,et al.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. , 2018, Molecular biology and evolution.

[7]  Rajneesh,et al.  Cyanobacterial Farming for Environment Friendly Sustainable Agriculture Practices: Innovations and Perspectives , 2018, Front. Environ. Sci..

[8]  Rajneesh,et al.  Cyanobacterial factories for the production of green energy and value-added products: An integrated approach for economic viability , 2017 .

[9]  Dima Kozakov,et al.  The ClusPro web server for protein–protein docking , 2017, Nature Protocols.

[10]  C. Cassier-Chauvat,et al.  Comparative Genomics of DNA Recombination and Repair in Cyanobacteria: Biotechnological Implications , 2016, Front. Microbiol..

[11]  A. Sancar Mechanisms of DNA Repair by Photolyase and Excision Nuclease (Nobel Lecture). , 2016, Angewandte Chemie.

[12]  Yin Li,et al.  From cyanochemicals to cyanofactories: a review and perspective , 2016, Microbial Cell Factories.

[13]  William Stafford Noble,et al.  The MEME Suite , 2015, Nucleic Acids Res..

[14]  T. Headley,et al.  Diversity, Distribution and Hydrocarbon Biodegradation Capabilities of Microbial Communities in Oil-Contaminated Cyanobacterial Mats from a Constructed Wetland , 2014, PloS one.

[15]  Alan Bridge,et al.  New and continuing developments at PROSITE , 2012, Nucleic Acids Res..

[16]  J. Zehr Nitrogen fixation by marine cyanobacteria. , 2011, Trends in microbiology.

[17]  J. William Schopf,et al.  The paleobiological record of photosynthesis , 2010, Photosynthesis Research.

[18]  D. Häder,et al.  Cyanobacteria and ultraviolet radiation (UVR) stress: Mitigation strategies , 2010, Ageing Research Reviews.

[19]  T. Carell,et al.  Structural biology of DNA photolyases and cryptochromes. , 2009, Current opinion in structural biology.

[20]  D. Jeruzalmi,et al.  A Structural Model for the Damage-sensing Complex in Bacterial Nucleotide Excision Repair* , 2009, Journal of Biological Chemistry.

[21]  B. Van Houten,et al.  Structure of the C‐terminal half of UvrC reveals an RNase H endonuclease domain with an Argonaute‐like catalytic triad , 2007, The EMBO journal.

[22]  Marcin Feder,et al.  Phylogenomic analysis of the GIY-YIG nuclease superfamily , 2006, BMC Genomics.

[23]  Ruth Nussinov,et al.  PatchDock and SymmDock: servers for rigid and symmetric docking , 2005, Nucleic Acids Res..

[24]  Conrad C. Huang,et al.  UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..

[25]  J. Raven,et al.  Genomics and chloroplast evolution: what did cyanobacteria do for plants? , 2003, Genome Biology.

[26]  D. Häder,et al.  UV-induced DNA damage and repair: a review , 2002, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

[27]  P. Hanawalt,et al.  A cut above: Discovery of an alternative excision repair pathway in bacteria , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[28]  P. Hanawalt,et al.  A phylogenomic study of DNA repair genes, proteins, and processes. , 1999, Mutation research.

[29]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[30]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[31]  T. Todo,et al.  A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts , 1993, Nature.

[32]  William R. Taylor,et al.  The rapid generation of mutation data matrices from protein sequences , 1992, Comput. Appl. Biosci..

[33]  D. Häder,et al.  Mechanisms of Photoprotection in Cyanobacteria , 2019, Cyanobacteria.

[34]  C. Selby Mfd Protein and Transcription–Repair Coupling in Escherichia coli , 2017, Photochemistry and photobiology.

[35]  Roman A. Laskowski,et al.  PDBsum: summaries and analyses of PDB structures , 2001, Nucleic Acids Res..

[36]  S. Pietrokovski,et al.  Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: coincidence of computational and molecular findings. , 1999, Nucleic acids research.

[37]  N. Guex,et al.  SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling , 1997, Electrophoresis.