Exploring the regulation of tRNA distribution on the genomic scale.

[1]  J. Elf,et al.  Selective Charging of tRNA Isoacceptors Explains Patterns of Codon Usage , 2003, Science.

[2]  Marc Dreyfus,et al.  The Poly(A) Tail of mRNAs Bodyguard in Eukaryotes, Scavenger in Bacteria , 2002, Cell.

[3]  J. Sambrook,et al.  DNA Microarrays: A Molecular Cloning Manual , 2002 .

[4]  C. Yanofsky,et al.  Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/antitermination decisions. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.

[5]  M. Deutscher,et al.  RNA quality control: degradation of defective transfer RNA , 2002, The EMBO journal.

[6]  M. Hecker,et al.  Bacillus subtilis Tolerance of Moderate Concentrations of Rifampin Involves the σB-Dependent General and Multiple Stress Response , 2002, Journal of bacteriology.

[7]  M. Sørensen,et al.  Charging levels of four tRNA species in Escherichia coli Rel(+) and Rel(-) strains during amino acid starvation: a simple model for the effect of ppGpp on translational accuracy. , 2001, Journal of molecular biology.

[8]  M. Deutscher,et al.  Exoribonucleases and their multiple roles in RNA metabolism. , 2001, Progress in nucleic acid research and molecular biology.

[9]  S. Kjelleberg,et al.  The role of RNA stability during bacterial stress responses and starvation. , 2000, Environmental microbiology.

[10]  C. Arraiano,et al.  Degradation of mRNA in bacteria: emergence of ubiquitous features , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[11]  C. Yanofsky.  Transcription Attenuation: Once Viewed as a Novel Regulatory Strategy , 2000, Journal of bacteriology.

[12]  S. Kanaya,et al.  Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. , 1999, Gene.

[13]  D. Botstein,et al.  Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[14]  M. Deutscher,et al.  Polyadenylation of stable RNA precursors in vivo. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[15]  N. Pace,et al.  Ribonuclease P: unity and diversity in a tRNA processing ribozyme. , 1998, Annual review of biochemistry.

[16]  A. Goffeau,et al.  The complete genome sequence of the Gram-positive bacterium Bacillus subtilis , 1997, Nature.

[17]  N. W. Davis,et al.  The complete genome sequence of Escherichia coli K-12. , 1997, Science.

[18]  H. Dong,et al.  Growth rate regulation of 4.5 S RNA and M1 RNA the catalytic subunit of Escherichia coli RNase P. , 1996, Journal of molecular biology.

[19]  C. Kurland,et al.  Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. , 1996, Journal of molecular biology.

[20]  R. Sauer,et al.  Role of a Peptide Tagging System in Degradation of Proteins Synthesized from Damaged Messenger RNA , 1996, Science.

[21]  M. Cashel,et al.  The stringent response , 1996 .

[22]  Ronald W. Davis,et al.  Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.

[23]  Dieter Söll,et al.  Trna: Structure, Biosynthesis, and Function , 1995 .

[24]  G. Björk.  Biosynthesis and Function of Modified Nucleosides , 1995 .

[25]  H. Inokuchi,et al.  Structure and Expression of Prokaryotic tRNA Genes , 1995 .

[26]  V. Emilsson,et al.  Growth-rate-dependent accumulation of twelve tRNA species in Escherichia coli. , 1993, Journal of molecular biology.

[27]  C. Green,et al.  tRNA, tRNA Processing, and Aminoacyl-tRNA Synthetases , 1993 .

[28]  D. Söll.  7 Transfer RNA: An RNA for All Seasons , 1993 .

[29]  P. Sharp,et al.  Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites. , 1992, Science.

[30]  V. Emilsson,et al.  Growth rate dependence of transfer RNA abundance in Escherichia coli. , 1990, The EMBO journal.

[31]  B. Ganem.  RNA world , 1987, Nature.

[32]  A. Lamond,et al.  Stringent control of bacterial transcription , 1985, Cell.

[33]  R. Gourse,et al.  Feedback regulation of rRNA and tRNA synthesis and accumulation of free ribosomes after conditional expression of rRNA genes. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[34]  R. Gourse,et al.  Level of rRNA, not tRNA, synthesis controls transcription of rRNA and tRNA operons in Escherichia coli , 1984, Journal of bacteriology.

[35]  R. Gourse,et al.  Expression of rRNA and tRNA genes in Escherichia coli: Evidence for feedback regulation by products of rRNA operons , 1983, Cell.

[36]  H. Ozeki,et al.  Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents. , 1983, Cold Spring Harbor symposia on quantitative biology.

[37]  T. Ikemura.  Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs. , 1982, Journal of molecular biology.

[38]  T. Ikemura.  Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. , 1981, Journal of molecular biology.

[39]  D. Henner,et al.  Transfer ribonucleic acid synthesis during sporulation and spore outgrowth in Bacillus subtilis studied by two-dimensional polyacrylamide gel electrophoresis , 1979, Journal of bacteriology.

[40]  M G Sargent,et al.  Control of cell length in Bacillus subtilis , 1975, Journal of bacteriology.

[41]  H. Khorana,et al.  Polynucleotide ligase-catalyzed joining of deoxyribo-oligonucleotides on ribopolynucleotide templates and of ribo-oligonucleotides on deoxyribopolynucleotide templates. , 1970, Proceedings of the National Academy of Sciences of the United States of America.