Advances in Laboratory Methods for Detection and Typing of Norovirus

ABSTRACT Human noroviruses are the leading cause of epidemic and sporadic gastroenteritis across all age groups. Although the disease is usually self-limiting, in the United States norovirus gastroenteritis causes an estimated 56,000 to 71,000 hospitalizations and 570 to 800 deaths each year. This minireview describes the latest data on laboratory methods (molecular, immunological) for norovirus detection, including real-time reverse transcription-quantitative PCR (RT-qPCR) and commercially available immunological assays as well as the latest FDA-cleared multi-gastrointestinal-pathogen platforms. In addition, an overview is provided on the latest nomenclature and molecular epidemiology of human noroviruses.

[1]  H. Greenberg,et al.  Epidemiology of Norwalk gastroenteritis and the role of Norwalk virus in outbreaks of acute nonbacterial gastroenteritis. , 1982, Annals of internal medicine.

[2]  D. Graham,et al.  Determination of the 50% human infectious dose for Norwalk virus. , 2014, The Journal of infectious diseases.

[3]  S. Okabe,et al.  Environmental Detection of Genogroup I, II, and IV Noroviruses by Using a Generic Real-Time Reverse Transcription-PCR Assay , 2013, Applied and Environmental Microbiology.

[4]  T. Wreghitt,et al.  An internally controlled, one-step, real-time RT-PCR assay for norovirus detection and genogrouping. , 2007, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[5]  P. Pothier,et al.  Evaluation of 4 immunochromatographic tests for rapid detection of norovirus in faecal samples. , 2013, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[6]  J. Gray,et al.  Chronic norovirus infection in an HIV-positive patient with persistent diarrhoea: a novel cause. , 2010, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[7]  M G Rossmann,et al.  X-ray crystallographic structure of the Norwalk virus capsid. , 1999, Science.

[8]  J. Vinjé,et al.  Proposal for a unified norovirus nomenclature and genotyping , 2013, Archives of Virology.

[9]  P. Woo,et al.  Complete Genome Sequences of Novel Canine Noroviruses in Hong Kong , 2012, Journal of Virology.

[10]  M. Beltramello,et al.  Immunogenetic Mechanisms Driving Norovirus GII.4 Antigenic Variation , 2012, PLoS pathogens.

[11]  Maciej F. Boni,et al.  Recombination within the Pandemic Norovirus GII.4 Lineage , 2013, Journal of Virology.

[12]  J. Vinjé,et al.  Infection control for norovirus. , 2014, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[13]  W. Leung,et al.  Fecal Viral Load and Norovirus-associated Gastroenteritis , 2006, Emerging infectious diseases.

[14]  Arlin G. Cameron,et al.  Noroviruses: The Most Common Pediatric Viral Enteric Pathogen at a Large University Hospital After Introduction of Rotavirus Vaccination. , 2013, Journal of the Pediatric Infectious Diseases Society.

[15]  M K Estes,et al.  Norwalk virus genome cloning and characterization , 1990, Science.

[16]  H. Vennema,et al.  Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction. , 2002, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[17]  K. Deforche,et al.  An automated genotyping tool for enteroviruses and noroviruses. , 2011, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[18]  M. Estes,et al.  Norovirus gastroenteritis. , 2009, The New England journal of medicine.

[19]  M. Estes,et al.  Norwalk Virus Minor Capsid Protein VP2 Associates within the VP1 Shell Domain , 2013, Journal of Virology.

[20]  D. Bernstein,et al.  Norovirus and medically attended gastroenteritis in U.S. children. , 2013, The New England journal of medicine.

[21]  J. Vinjé,et al.  Diagnostic Accuracy and Analytical Sensitivity of IDEIA Norovirus Assay for Routine Screening of Human Norovirus , 2010, Journal of Clinical Microbiology.

[22]  Ian N. Clarke,et al.  Norwalk-like viruses , 2002 .

[23]  M. Gradus,et al.  Evaluation of Luminex xTAG Gastrointestinal Pathogen Analyte-Specific Reagents for High-Throughput, Simultaneous Detection of Bacteria, Viruses, and Parasites of Clinical and Public Health Importance , 2013, Journal of Clinical Microbiology.

[24]  影山 努 Broadly Reactive and Highly Sensitive Assay for Norwalk-Like Viruses Based on Real Time Quantitative Reverse Transcription-PCR , 2004 .

[25]  T. Gojobori,et al.  Phylogenetic analysis of the complete genome of 18 Norwalk-like viruses. , 2002, Virology.

[26]  K. Bányai,et al.  Genetic Heterogeneity and Recombination in Canine Noroviruses , 2009, Journal of Virology.

[27]  Robin Patel,et al.  Comparative Evaluation of Two Commercial Multiplex Panels for Detection of Gastrointestinal Pathogens by Use of Clinical Stool Specimens , 2014, Journal of Clinical Microbiology.

[28]  M. Iturriza-Gómara,et al.  Diagnosing norovirus-associated infectious intestinal disease using viral load , 2009, BMC infectious diseases.

[29]  Jan Vinjé,et al.  Norovirus Disease in the United States , 2013, Emerging infectious diseases.

[30]  J. Vinjé,et al.  Effects and Clinical Significance of GII.4 Sydney Norovirus, United States, 2012–2013 , 2013, Emerging infectious diseases.

[31]  U. Parashar,et al.  Severe outcomes are associated with genogroup 2 genotype 4 norovirus outbreaks: a systematic literature review. , 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[32]  Harry Vennema,et al.  Norovirus illness is a global problem: emergence and spread of norovirus GII.4 variants, 2001-2007. , 2009, The Journal of infectious diseases.

[33]  Inacio Mandomando,et al.  Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study , 2013, The Lancet.

[34]  Roger I Glass,et al.  Norovirus classification and proposed strain nomenclature. , 2006, Virology.

[35]  K. Bok,et al.  Norovirus gastroenteritis in immunocompromised patients. , 2012, The New England journal of medicine.

[36]  L. Gould,et al.  Acute Gastroenteritis Surveillance through the National Outbreak Reporting System, United States , 2013, Emerging infectious diseases.

[37]  J. Vinjé,et al.  Genotypic and Epidemiologic Trends of Norovirus Outbreaks in the United States, 2009 to 2013 , 2013, Journal of Clinical Microbiology.

[38]  R. Baric,et al.  The state of norovirus vaccines. , 2014, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[39]  J. Vinjé,et al.  Novel Surveillance Network for Norovirus Gastroenteritis Outbreaks, United States , 2011, Emerging infectious diseases.