Mouse Full-Length cDNA Encyclopedia Targeting a Complex Transcriptome: The Construction of the

[1]  Yoshihide Hayashizaki,et al.  The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer. , 2003, Genome research.

[2]  Y. Hayashizaki,et al.  Comprehensive analysis of the mouse metabolome based on the transcriptome. , 2003, Genome research.

[3]  J. Kawai,et al.  Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene. , 2003, Gene.

[4]  G. Rubin,et al.  A Drosophila full-length cDNA resource , 2002, Genome Biology.

[5]  Colin N. Dewey,et al.  Initial sequencing and comparative analysis of the mouse genome. , 2002 .

[6]  T. Speed,et al.  Molecular Analysis of Gene Expression in the Developing Pontocerebellar Projection System , 2002, Neuron.

[7]  J. Sambrook,et al.  DNA Microarrays: A Molecular Cloning Manual , 2002 .

[8]  Piero Carninci,et al.  Cytoplasmic RNA extraction from fresh and frozen mammalian tissues. , 2002, BioTechniques.

[9]  Masaru Tomita,et al.  Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data. , 2002, Genome research.

[10]  Kenneth H Buetow,et al.  An anatomy of normal and malignant gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[11]  J. Kawai,et al.  A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs. , 2002, Genome research.

[12]  C. V. Jongeneel,et al.  Long-range heterogeneity at the 3' ends of human mRNAs. , 2002, Genome research.

[13]  Zena Werb,et al.  Stromal Effects on Mammary Gland Development and Breast Cancer , 2002, Science.

[14]  S. P. Fodor,et al.  Large-Scale Transcriptional Activity in Chromosomes 21 and 22 , 2002, Science.

[15]  Piero Carninci,et al.  Extra-long first-strand cDNA synthesis. , 2002, BioTechniques.

[16]  J. Rowley,et al.  Oligo(dT) primer generates a high frequency of truncated cDNAs through internal poly(A) priming during reverse transcription , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[17]  J. Kawai,et al.  Removal of polyA tails from full-length cDNA libraries for high-efficiency sequencing. , 2001, BioTechniques.

[18]  Emmanuel Dias-Neto,et al.  The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[19]  Piero Carninci,et al.  Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis. , 2001, Genomics.

[20]  S. Batalov,et al.  A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel Genes , 2001, Cell.

[21]  Piero Carninci,et al.  Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method. , 2001, BioTechniques.

[22]  A Suyama,et al.  Diverse transcriptional initiation revealed by fine, large‐scale mapping of mRNA start sites , 2001, EMBO reports.

[23]  T. Tsunoda,et al.  Identification and characterization of the potential promoter regions of 1031 kinds of human genes. , 2001, Genome research.

[24]  M B Eisen,et al.  Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[25]  J. Harper,et al.  A premature-termination mutation in the Mus musculus cyclin-dependent kinase 3 gene. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[26]  C. Bult,et al.  Functional annotation of a full-length mouse cDNA collection , 2001, Nature.

[27]  M. Lovett,et al.  cDNA detection and analysis. , 2001, Current opinion in chemical biology.

[28]  Piero Carninci,et al.  Comparative evaluation of 5'-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries. , 2001, Gene.

[29]  Piero Carninci,et al.  Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library. , 2001, Genome research.

[30]  Piero Carninci,et al.  RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. , 2000, Genome research.

[31]  Piero Carninci,et al.  Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. , 2000, Genome research.

[32]  D. Gautheret,et al.  Patterns of variant polyadenylation signal usage in human genes. , 2000, Genome research.

[33]  C. Fizames,et al.  Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence , 2000, Nature Genetics.

[34]  S. Aparicio,et al.  How to count…human genes , 2000, Nature Genetics.

[35]  P. Green,et al.  Analysis of expressed sequence tags indicates 35,000 human genes , 2000, Nature Genetics.

[36]  M. Hattori,et al.  The DNA sequence of human chromosome 21 , 2000, Nature.

[37]  J. Rowley,et al.  Screening poly(dA/dT)- cDNAs for gene identification. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[38]  Melanie E. Goward,et al.  The DNA sequence of human chromosome 22 , 1999, Nature.

[39]  J. Kawai,et al.  Automated filtration-based high-throughput plasmid preparation system. , 1999, Genome research.

[40]  J. Kawai,et al.  Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display. , 1999, Nucleic acids research.

[41]  E. Mardis,et al.  An encyclopedia of mouse genes , 1999, Nature Genetics.

[42]  S Audic,et al.  Alternate polyadenylation in human mRNAs: a large-scale analysis by EST clustering. , 1998, Genome research.

[43]  Piero Carninci,et al.  Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones. , 1998, Genomics.

[44]  N Sasaki,et al.  Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[45]  Y. Suzuki,et al.  Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. , 1997, Gene.

[46]  Piero Carninci,et al.  Simple and rapid preparation of plasmid template by a filtration method using microtiter filter plates. , 1997, Nucleic acids research.

[47]  Piero Carninci,et al.  High-efficiency full-length cDNA cloning by biotinylated CAP trapper. , 1996, Genomics.

[48]  M. Soares,et al.  Normalization and subtraction: two approaches to facilitate gene discovery. , 1996, Genome research.

[49]  E. Mardis,et al.  Generation and analysis of 280,000 human expressed sequence tags. , 1996, Genome research.

[50]  R. Fleischmann,et al.  Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. , 1995, Nature.

[51]  K. Maruyama,et al.  Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. , 1994, Gene.

[52]  A. Kerlavage,et al.  Complementary DNA sequencing: expressed sequence tags and human genome project , 1991, Science.

[53]  W. Huse,et al.  Lambda ZAP: a bacteriophage lambda expression vector with in vivo excision properties. , 1988, Nucleic acids research.

[54]  B. Hoffman,et al.  A simple and very efficient method for generating cDNA libraries. , 1983, Gene.

[55]  R. Britten,et al.  Significance of rare mRNA sequences in liver , 1977 .

[56]  Janan T. Eppig,et al.  The Mouse Gene Expression Database (GXD) , 2001, Nucleic Acids Res..

[57]  Dawood B. Dudekula,et al.  Verification and initial annotation of the NIA mouse 15K cDNA clone set , 2001, Nature Genetics.

[58]  Piero Carninci,et al.  High-efficiency full-length cDNA cloning. , 1999, Methods in enzymology.

[59]  Piero Carninci,et al.  High efficiency selection of full-length cDNA by improved biotinylated cap trapper. , 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.