Inferring the global structure of chromosomes from structural variations
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[1] Mathieu Blanchette,et al. Ordering Partially Assembled Genomes Using Gene Arrangements , 2006, Comparative Genomics.
[2] Rolf Niedermeier,et al. A new view on Rural Postman based on Eulerian Extension and Matching , 2011, J. Discrete Algorithms.
[3] J. Troge,et al. Tumour evolution inferred by single-cell sequencing , 2011, Nature.
[4] Loretta Auvil,et al. Reference-assisted chromosome assembly , 2013, Proceedings of the National Academy of Sciences.
[5] Benjamin J. Raphael,et al. Reconstructing cancer genomes from paired-end sequencing data , 2012, BMC Bioinformatics.
[6] Shannon M. Bell,et al. MIPHENO: data normalization for high throughput metabolite analysis , 2012, BMC Bioinformatics.
[7] Mihai Pop,et al. Genome assembly reborn: recent computational challenges , 2009, Briefings Bioinform..
[8] Süleyman Cenk Sahinalp,et al. Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes , 2009, RECOMB.
[9] Ryan M. Layer,et al. Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms , 2013, Genome research.
[10] R. Wilson,et al. BreakDancer: An algorithm for high resolution mapping of genomic structural variation , 2009, Nature Methods.
[11] Kenny Q. Ye,et al. Mapping copy number variation by population scale genome sequencing , 2010, Nature.
[12] N. Carter,et al. Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development , 2011, Cell.
[13] Paul Medvedev,et al. Maximum Likelihood Genome Assembly , 2009, J. Comput. Biol..
[14] Mihai Pop,et al. Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing , 2009, J. Comput. Biol..
[15] M. Gerstein,et al. CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing. , 2011, Genome research.
[16] Harold N. Gabow,et al. An efficient reduction technique for degree-constrained subgraph and bidirected network flow problems , 1983, STOC.
[17] Antony V. Cox,et al. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing , 2008, Nature Genetics.
[18] Paul Medvedev,et al. Computational methods for discovering structural variation with next-generation sequencing , 2009, Nature Methods.
[19] M. Shen. Chromoplexy: a new category of complex rearrangements in the cancer genome. , 2013, Cancer cell.
[20] David S. Johnson,et al. Computers and Intractability: A Guide to the Theory of NP-Completeness , 1978 .
[21] Huanming Yang,et al. De novo assembly of human genomes with massively parallel short read sequencing. , 2010, Genome research.
[22] Ravindra K. Ahuja,et al. Network Flows: Theory, Algorithms, and Applications , 1993 .
[23] Kai Ye,et al. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads , 2009, Bioinform..
[24] M. Ferguson-Smith,et al. Afrotheria genome; overestimation of genome size and distinct chromosome GC content revealed by flow karyotyping. , 2013, Genomics.
[25] Markus J. van Roosmalen,et al. Constitutional chromothripsis rearrangements involve clustered double-stranded DNA breaks and nonhomologous repair mechanisms. , 2012, Cell reports.
[26] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[27] Ali Bashir,et al. Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer , 2008, PLoS Comput. Biol..
[28] Steven J. M. Jones,et al. Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .
[29] Ira M. Hall,et al. Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome. , 2010, Genome research.
[30] David K. Smith. Network Flows: Theory, Algorithms, and Applications , 1994 .
[31] Jan O. Korbel,et al. Phenotypic impact of genomic structural variation: insights from and for human disease , 2013, Nature Reviews Genetics.
[32] Seyed Kamaledin Setarehdan,et al. Centromere and Length Detection in Artificially Straightened Highly Curved Human Chromosomes , 2012 .
[33] A. Sivachenko,et al. Punctuated Evolution of Prostate Cancer Genomes , 2013, Cell.
[34] Eugene W. Myers,et al. The fragment assembly string graph , 2005, ECCB/JBI.
[35] A. Gnirke,et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data , 2010, Proceedings of the National Academy of Sciences.