Proton-Coupled Electron Transfer in the Oxidation of Guanosine Monophosphate by Ru(bpy)33+

Oxidation of guanine by the outer-sphere metal complex oxidant Ru(bpy)33+ (bpy is 2,2′-bipyridine) has been explored in deoxyguanosine-5′-monophosphate with the added buffers succinic acid/succinate Hsuc/suc–• (pKa = 5.6), H2PO4–/HPO42– (pKa = 7.2), and Tris [(HOCH2)3CNH3+/(HOCH2)3CNH2] (pKa = 8.1) at 23 ± 2 °C. Over an extended range of buffer concentrations and ratios, there is clear evidence for the mechanistic importance of pathways involving concerted electron–proton transfer. In this pathway, proton transfer to the base form of the buffer occurs in concert with electron transfer to the oxidant, Ru(bpy)33+.

[1]  L. Hammarström,et al.  Analysis of Hydrogen-Bonding Effects on Excited-State Proton-Coupled Electron Transfer from a Series of Phenols to a Re(I) Polypyridyl Complex , 2017 .

[2]  Wenchao Lu,et al.  Deprotonated guanine·cytosine and 9-methylguanine·cytosine base pairs and their "non-statistical" kinetics: a combined guided-ion beam and computational study. , 2016, Physical chemistry chemical physics : PCCP.

[3]  M. K. Brennaman,et al.  Direct observation of light-driven, concerted electron–proton transfer , 2016, Proceedings of the National Academy of Sciences.

[4]  Noémie Elgrishi,et al.  Reaction Pathways of Hydrogen-Evolving Electrocatalysts: Electrochemical and Spectroscopic Studies of Proton-Coupled Electron Transfer Processes , 2016 .

[5]  H. Schlegel,et al.  Calculations of pKa's and redox potentials of nucleobases with explicit waters and polarizable continuum solvation. , 2015, The journal of physical chemistry. A.

[6]  C. Burrows,et al.  Rates of Chemical Cleavage of DNA and RNA Oligomers Containing Guanine Oxidation Products , 2015, Chemical research in toxicology.

[7]  T. Meyer,et al.  Concerted Electron–Proton Transfer (EPT) in the Oxidation of Cysteine , 2015 .

[8]  Kunhui Liu,et al.  Direct observation of guanine radical cation deprotonation in G-quadruplex DNA. , 2015, Journal of the American Chemical Society.

[9]  J. Savéant Concerted proton-electron transfers: fundamentals and recent developments. , 2014, Annual review of analytical chemistry.

[10]  T. Majima,et al.  Hole trapping of G-quartets in a G-quadruplex. , 2013, Angewandte Chemie.

[11]  C. Burrows,et al.  Whence flavins? Redox-active ribonucleotides link metabolism and genome repair to the RNA world. , 2012, Accounts of chemical research.

[12]  L. Hammarström,et al.  Spanning four mechanistic regions of intramolecular proton-coupled electron transfer in a Ru(bpy)3(2+)-tyrosine complex. , 2012, Journal of the American Chemical Society.

[13]  S. Styring,et al.  Proton-coupled electron transfer of tyrosines in Photosystem II and model systems for artificial photosynthesis: the role of a redox-active link between catalyst and photosensitizer , 2011 .

[14]  Anilesh Kumar,et al.  Proton-coupled electron transfer in DNA on formation of radiation-produced ion radicals. , 2010, Chemical reviews.

[15]  J. Mayer,et al.  Thermochemistry of proton-coupled electron transfer reagents and its implications. , 2010, Chemical reviews.

[16]  Jean-Michel Savéant,et al.  Concerted proton-electron transfers: electrochemical and related approaches. , 2010, Accounts of chemical research.

[17]  Elizabeth C. Theil,et al.  Nature of guanine oxidation in RNA via the flash-quench technique versus direct oxidation by a metal oxo complex. , 2010, Inorganic chemistry.

[18]  J. Savéant,et al.  The electrochemical approach to concerted proton—electron transfers in the oxidation of phenols in water , 2009, Proceedings of the National Academy of Sciences.

[19]  S. Tagawa,et al.  Effect of base sequence and deprotonation of Guanine cation radical in DNA. , 2008, The journal of physical chemistry. B.

[20]  J. Cadet,et al.  Oxidatively generated damage to the guanine moiety of DNA: mechanistic aspects and formation in cells. , 2008, Accounts of chemical research.

[21]  Stenbjörn Styring,et al.  Coupled electron transfers in artificial photosynthesis , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.

[22]  A. Paul,et al.  Proton-coupled electron transfer. , 2012, Chemical reviews.

[23]  T. Meyer,et al.  Proton-coupled electron transfer. , 2007, Chemical reviews.

[24]  T. Meyer,et al.  The role of free energy change in coupled electron-proton transfer. , 2007, Journal of the American Chemical Society.

[25]  N. Sutin Theory of electron transfer reactions: insights and hindsights , 2007 .

[26]  B. Meunier,et al.  Guanine oxidation: one- and two-electron reactions. , 2006, Chemistry.

[27]  T. Meyer,et al.  Electrocatalytic oxidation of tyrosine by parallel rate-limiting proton transfer and multisite electron-proton transfer. , 2006, Journal of the American Chemical Society.

[28]  P. Swiderek Fundamental processes in radiation damage of DNA. , 2006, Angewandte Chemie.

[29]  Ian J. Rhile,et al.  Concerted proton-electron transfer in the oxidation of hydrogen-bonded phenols. , 2006, Journal of the American Chemical Society.

[30]  M. Lukin,et al.  NMR structures of damaged DNA. , 2006, Chemical reviews.

[31]  Rebecca C Holmberg,et al.  Electrochemical determination of triple helices: electrocatalytic oxidation of guanine in an intramolecular triplex. , 2004, Inorganic chemistry.

[32]  S. Tagawa,et al.  Direct observation of guanine radical cation deprotonation in duplex DNA using pulse radiolysis. , 2003, Journal of the American Chemical Society.

[33]  N. Iordanova,et al.  Theoretical investigation of large kinetic isotope effects for proton-coupled electron transfer in ruthenium polypyridyl complexes. , 2002, Journal of the American Chemical Society.

[34]  N. Geacintov,et al.  Proton-coupled electron-transfer reactions at a distance in DNA duplexes: Kinetic deuterium isotope effect , 2001 .

[35]  J. Reynisson,et al.  Is "frank" DNA-strand breakage via the guanine radical thermodynamically and sterically possible? , 2001, Chemistry.

[36]  H. Decornez,et al.  Theoretical study of electron, proton, and proton-coupled electron transfer in iron bi-imidazoline complexes. , 2001, Journal of the American Chemical Society.

[37]  H. Thorp,et al.  Proton-coupled electron transfer in duplex DNA: driving force dependence and isotope effects on electrocatalytic oxidation of guanine. , 2001, Journal of the American Chemical Society.

[38]  H. Thorp,et al.  Electrocatalysis of Guanine Electron Transfer: New Insights from Submillimeter Carbon Electrodes , 2000 .

[39]  L. Krishtalik The mechanism of the proton transfer: an outline. , 2000, Biochimica et biophysica acta.

[40]  Stephanie J. Codden,et al.  Effects of Base Stacking on Guanine Electron Transfer: Rate Constants for G and GG Sequences of Oligonucleotides from Catalytic Electrochemistry , 2000 .

[41]  T. Meyer,et al.  Medium Effects on Charge Transfer in Metal Complexes. , 1998, Chemical reviews.

[42]  C. Burrows,et al.  Oxidative Nucleobase Modifications Leading to Strand Scission. , 1998, Chemical reviews.

[43]  Kendall N. Houk,et al.  EFFECT OF GUANINE STACKING ON THE OXIDATION OF 8-OXOGUANINE IN B-DNA , 1998 .

[44]  G. Schuster,et al.  Intramolecular Photoinduced Electron Transfer to Anthraquinones Linked to Duplex DNA: The Effect of Gaps and Traps on Long-Range Radical Cation Migration , 1997 .

[45]  Slobodan V. Jovanovic,et al.  How Easily Oxidizable Is DNA? One-Electron Reduction Potentials of Adenosine and Guanosine Radicals in Aqueous Solution , 1997 .

[46]  Dean H. Johnston,et al.  ELECTROCHEMICAL MEASUREMENT OF THE SOLVENT ACCESSIBILITY OF NUCLEOBASES USING ELECTRON TRANSFER BETWEEN DNA AND METAL COMPLEXES , 1995 .

[47]  R. Lyngdoh,et al.  Proton transfer reactions of nucleic acid bases: A semiempirical molecular orbital study , 1995, Proceedings / Indian Academy of Sciences.

[48]  J. Kelly,et al.  Photoaddition of ruthenium(II)-tris-1,4,5,8-tetraazaphenanthrene to DNA and mononucleotides. , 1994, Journal of photochemistry and photobiology. B, Biology.

[49]  G. W. Buchko,et al.  Identification of 2-deoxy-D-ribono-1,4-lactone at the site of benzophenone photosensitized release of guanine in 2′-deoxyguanosine and thymidylyl-(3′-5′)-2′-deoxyguanosine , 1992 .

[50]  J. Hupp,et al.  Linear free energy relations for multielectron transfer kinetics: a brief look at the Brønsted/Tafel analogy , 1990 .

[51]  R. Marcus,et al.  Electron transfers in chemistry and biology , 1985 .

[52]  R. C. Young,et al.  Measurement of rates of electron transfer between tris(2,2'-bipyridine)ruthenium(3+) and tris(1,10-phenanthroline)iron(2+) ions and between tris(1,10-phenanthroline)ruthenium(3+) and tris(2,2'-bipyridine)ruthenium(2+) ions by differential excitation flash photolysis , 1977 .

[53]  H. Thorp,et al.  Proton-Coupled Electron Transfer in Guanine Oxidation: Effects of Isotope, Solvent, and Chemical Modification , 2003 .

[54]  N. Geacintov,et al.  The Kinetic Deuterium Isotope Effect as a Probe of a Proton Coupled Electron Transfer Mechanism in the Oxidation of Guanine by 2-Aminopurine Radicals , 2000 .

[55]  C. Burrows,et al.  Insertion of dGMP and dAMP during in vitro DNA synthesis opposite an oxidized form of 7,8-dihydro-8-oxoguanine. , 1999, Nucleic acids research.

[56]  N. Hush,et al.  Adiabatic theory of outer sphere electron-transfer reactions in solution , 1961 .