Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination
暂无分享,去创建一个
[1] Christopher A. Voigt,et al. Protein building blocks preserved by recombination , 2002, Nature Structural Biology.
[2] W. Coco,et al. RACHITT: Gene family shuffling by Random Chimeragenesis on Transient Templates. , 2003, Methods in molecular biology.
[3] Christopher A. Voigt,et al. Functional evolution and structural conservation in chimeric cytochromes p450: calibrating a structure-guided approach. , 2004, Chemistry & biology.
[4] Adam Godzik,et al. Flexible structure alignment by chaining aligned fragment pairs allowing twists , 2003, ECCB.
[5] Jeffrey B. Endelman,et al. Structure-Guided Recombination Creates an Artificial Family of Cytochromes P450 , 2006, PLoS biology.
[6] Marc Ostermeier,et al. Finding Cinderella's slipper—proteins that fit , 1999, Nature Biotechnology.
[7] W. P. Russ,et al. Natural-like function in artificial WW domains , 2005, Nature.
[8] C D Maranas,et al. Creating multiple-crossover DNA libraries independent of sequence identity , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[9] Stephen J Benkovic,et al. FamClash: A method for ranking the activity of engineered enzymes , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[10] Valérie Taly,et al. A combinatorial approach to substrate discrimination in the P450 CYP1A subfamily. , 2007, Biochimica et biophysica acta.
[11] W. Stemmer. Rapid evolution of a protein in vitro by DNA shuffling , 1994, Nature.
[12] R. Lathrop. The protein threading problem with sequence amino acid interaction preferences is NP-complete. , 1994, Protein engineering.
[13] Chris Bailey-Kellogg,et al. Site‐directed combinatorial construction of chimaeric genes: General method for optimizing assembly of gene fragments , 2006, Proteins.
[14] W. P. Russ,et al. Evolutionary information for specifying a protein fold , 2005, Nature.
[15] Temple F. Smith,et al. Global optimum protein threading with gapped alignment and empirical pair score functions. , 1996, Journal of molecular biology.
[16] P. T. Jones,et al. Replacing the complementarity-determining regions in a human antibody with those from a mouse , 1986, Nature.
[17] Chris Bailey-Kellogg,et al. Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins , 2008, RECOMB.
[18] Stephen J Benkovic,et al. Evolution of highly active enzymes by homology-independent recombination. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[19] Costas D Maranas,et al. Design of combinatorial protein libraries of optimal size , 2005, Proteins.
[20] P E Bourne,et al. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. , 1998, Protein engineering.
[21] Sanela Kurtovic,et al. Structural determinants of glutathione transferases with azathioprine activity identified by DNA shuffling of alpha class members. , 2008, Journal of molecular biology.
[22] Ying Xu,et al. Raptor: Optimal Protein Threading by Linear Programming , 2003, J. Bioinform. Comput. Biol..
[23] R. Jernigan,et al. Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation , 1985 .
[24] Costas D Maranas,et al. Identifying residue–residue clashes in protein hybrids by using a second-order mean-field approach , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[25] H. Wolfson,et al. Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[26] D. T. Jones,et al. A new approach to protein fold recognition , 1992, Nature.
[27] Adam Godzik,et al. Fold recognition methods. , 2005, Methods of biochemical analysis.
[28] Frances H Arnold,et al. Library analysis of SCHEMA‐guided protein recombination , 2003, Protein science : a publication of the Protein Society.
[29] Chris Bailey-Kellogg,et al. Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination , 2006, RECOMB.
[30] George Georgiou,et al. The evolution of catalytic efficiency and substrate promiscuity in human theta class 1-1 glutathione transferase. , 2006, Journal of molecular biology.
[31] Frances H Arnold,et al. Staggered extension process (StEP) in vitro recombination. , 2003, Methods in molecular biology.
[32] Marc Ostermeier,et al. A combinatorial approach to hybrid enzymes independent of DNA homology , 1999, Nature Biotechnology.
[33] S L Morrison,et al. Chimeric human antibody molecules: mouse antigen-binding domains with human constant region domains. , 1984, Proceedings of the National Academy of Sciences of the United States of America.
[34] C. Sander,et al. Protein structure comparison by alignment of distance matrices. , 1993, Journal of molecular biology.
[35] Linda A. Castle,et al. Discovery and Directed Evolution of a Glyphosate Tolerance Gene , 2004, Science.
[36] H. Scheraga,et al. Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins. , 1976, Macromolecules.
[37] D. Eisenberg,et al. A method to identify protein sequences that fold into a known three-dimensional structure. , 1991, Science.
[38] Chris Bailey-Kellogg,et al. Robotic hierarchical mixing for the production of combinatorial libraries of proteins and small molecules. , 2008, Journal of combinatorial chemistry.
[39] Chris Bailey-Kellogg,et al. Graphical Models of Residue Coupling in Protein Families , 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[40] Paul E O'Maille,et al. Structure-based combinatorial protein engineering (SCOPE). , 2002, Journal of Molecular Biology.