Dynamics of COVID-19 under social distancing measures are driven by transmission network structure

In the absence of pharmaceutical interventions, social distancing is being used worldwide to curb the spread of COVID-19. The impact of these measures has been inconsistent, with some regions rapidly nearing disease elimination and others seeing delayed peaks or nearly flat epidemic curves. Here we build a stochastic epidemic model to examine the effects of COVID-19 clinical progression and transmission network structure on the outcomes of social distancing interventions. We find that the strength of within-household transmission is a critical determinant of success, governing the timing and size of the epidemic peak, the rate of decline, individual risks of infection, and the success of partial relaxation measures. The structure of residual external connections, driven by workforce participation and essential businesses, interacts to determine outcomes. These findings can improve future predictions of the timescale and efficacy of interventions needed to control similar outbreaks, and highlight the need for better quantification and control of household transmission.

[1]  D. Watts,et al.  Multiscale, resurgent epidemics in a hierarchical metapopulation model. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[2]  J. A. Navarro,et al.  Nonpharmaceutical interventions implemented by US cities during the 1918-1919 influenza pandemic. , 2007, JAMA.

[3]  N. Christakis,et al.  The Spread of Obesity in a Large Social Network Over 32 Years , 2007, The New England journal of medicine.

[4]  R. Mikolajczyk,et al.  Social Contacts and Mixing Patterns Relevant to the Spread of Infectious Diseases , 2008, PLoS medicine.

[5]  M. Salathé,et al.  The effect of opinion clustering on disease outbreaks , 2008, Journal of The Royal Society Interface.

[6]  Joel C. Miller Spread of infectious disease through clustered populations , 2008, Journal of The Royal Society Interface.

[7]  Frank Ball,et al.  A network with tunable clustering, degree correlation and degree distribution, and an epidemic thereon , 2012, Journal of mathematical biology.

[8]  C. Wrzus,et al.  Social network changes and life events across the life span: a meta-analysis. , 2013, Psychological bulletin.

[9]  E. Tognotti Lessons from the History of Quarantine, from Plague to Influenza A , 2013, Emerging infectious diseases.

[10]  Kerstin Sailer,et al.  Modeling workplace contact networks: The effects of organizational structure, architecture, and reporting errors on epidemic predictions , 2015, Network Science.

[11]  B. Cowling,et al.  Household Transmission of Influenza Virus , 2015, Trends in Microbiology.

[12]  T. Hollingsworth,et al.  Measuring and modelling the effects of systematic non-adherence to mass drug administration , 2017, Epidemics.

[13]  Mark Jit,et al.  Projecting social contact matrices in 152 countries using contact surveys and demographic data , 2017, PLoS Comput. Biol..

[14]  Alessandro Vespignani,et al.  Measurability of the epidemic reproduction number in data-driven contact networks , 2018, Proceedings of the National Academy of Sciences.

[15]  R N Thompson,et al.  Improved inference of time-varying reproduction numbers during infectious disease outbreaks , 2019, Epidemics.

[16]  A. Kucharski,et al.  Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15 , 2019, PLoS Comput. Biol..

[17]  Sai Thein Than Tun,et al.  Potential herd protection against Plasmodium falciparum infections conferred by mass antimalarial drug administrations , 2019, eLife.

[18]  N. Hens,et al.  Clustering of susceptible individuals within households can drive measles outbreaks: an individual-based model exploration , 2019, Scientific Reports.

[19]  Hannah R. Meredith,et al.  The Incubation Period of Coronavirus Disease 2019 (COVID-19) From Publicly Reported Confirmed Cases: Estimation and Application , 2020, Annals of Internal Medicine.

[20]  Zhiru Gao,et al.  A systematic review of asymptomatic infections with COVID-19 , 2020, Journal of Microbiology, Immunology and Infection.

[21]  Luna Yue Huang,et al.  The effect of large-scale anti-contagion policies on the COVID-19 pandemic , 2020, Nature.

[22]  H. Tian,et al.  Reduction of secondary transmission of SARS-CoV-2 in households by face mask use, disinfection and social distancing: a cohort study in Beijing, China , 2020, BMJ Global Health.

[23]  R. Viner,et al.  Determining the optimal strategy for reopening schools, the impact of test and trace interventions, and the risk of occurrence of a second COVID-19 epidemic wave in the UK: a modelling study , 2020, The Lancet Child & Adolescent Health.

[24]  Quantifying population contact patterns in the United States during the COVID-19 pandemic , 2020 .

[25]  S. Pei,et al.  Initial Simulation of SARS-CoV2 Spread and Intervention Effects in the Continental US , 2020, medRxiv.

[26]  Gale R. Burstein,et al.  Disruption of healthcare: Will the COVID pandemic worsen non-COVID outcomes and disease outbreaks? , 2020, Progress in Pediatric Cardiology.

[27]  S. Pei,et al.  Differential Effects of Intervention Timing on COVID-19 Spread in the United States , 2020, Science Advances.

[28]  J. Tate,et al.  Household Transmission of SARS-CoV-2 in the United States , 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[29]  D. Christiani,et al.  Work-related Covid-19 transmission , 2020, medRxiv.

[30]  L. Fang,et al.  Household Secondary Attack Rate of COVID-19 and Associated Determinants , 2020, medRxiv.

[31]  Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China , 2020, Nature Medicine.

[32]  Ruifu Yang,et al.  The impact of transmission control measures during the first 50 days of the COVID-19 epidemic in China , 2020, medRxiv.

[33]  M. Halloran,et al.  Household transmission of SARS-CoV-2: a systematic review and meta-analysis of secondary attack rate , 2020, medRxiv.

[34]  M. Nöthen,et al.  Infection fatality rate of SARS-CoV-2 infection in a German community with a super-spreading event , 2020 .

[35]  Yongsheng Wu,et al.  Epidemiology and transmission of COVID-19 in 391 cases and 1286 of their close contacts in Shenzhen, China: a retrospective cohort study , 2020, The Lancet Infectious Diseases.

[36]  Lucie Abeler-Dörner,et al.  Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing , 2020, Science.

[37]  Isabel J. Raabe,et al.  Social network-based distancing strategies to flatten the COVID-19 curve in a post-lockdown world , 2020, Nature Human Behaviour.

[38]  J. Steinhardt,et al.  Estimating Household Transmission of SARS-CoV-2 , 2020, medRxiv.

[39]  Royce J. Wilson,et al.  Impacts of State-Level Policies on Social Distancing in the United States Using Aggregated Mobility Data during the COVID-19 Pandemic , 2020 .

[40]  M. Lipsitch,et al.  Projecting the transmission dynamics of SARS-CoV-2 through the postpandemic period , 2020, Science.

[41]  R. Ke,et al.  Fast spread of COVID-19 in Europe and the US suggests the necessity of early, strong and comprehensive interventions , 2020, medRxiv.

[42]  C. Reed,et al.  Transmission of SARS-COV-2 Infections in Households — Tennessee and Wisconsin, April–September 2020 , 2020, MMWR. Morbidity and mortality weekly report.

[43]  Andrew T. Levin,et al.  ASSESSING THE AGE SPECIFICITY OF INFECTION FATALITY RATES FOR COVID-19: META-ANALYSIS & PUBLIC POLICY IMPLICATIONS , 2020, medRxiv.

[44]  M. Lipsitch,et al.  Individual quarantine versus active monitoring of contacts for the mitigation of COVID-19: a modelling study , 2020, The Lancet Infectious Diseases.

[45]  Ihme COVID-19 Forecasting Team Modeling COVID-19 scenarios for the United States , 2020, Nature medicine.

[46]  L. Munoz-Price,et al.  Coronavirus disease 2019 (COVID-19) in long-term care facilities: A review of epidemiology, clinical presentations, and containment interventions , 2020, Infection Control & Hospital Epidemiology.

[47]  Wing Yin Venus Lau,et al.  Evidence for transmission of COVID-19 prior to symptom onset , 2020, eLife.

[48]  A. Vespignani,et al.  Changes in contact patterns shape the dynamics of the COVID-19 outbreak in China , 2020, Science.

[49]  S. Bhatt,et al.  Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe , 2020, Nature.

[50]  N. Banholzer,et al.  Impact of non-pharmaceutical interventions on documented cases of COVID-19 , 2020, medRxiv.

[51]  Decline in global transmission rates of COVID-19 through May 6 2020 , 2020 .

[52]  Reed J. D. Sorensen,et al.  Modeling COVID-19 scenarios for the United States , 2020, Nature Medicine.

[53]  R. Fishman,et al.  Correlations of mobility and Covid-19 transmission in global data , 2020, PloS one.

[54]  Assessing the age specificity of infection fatality rates for COVID-19: systematic review, meta-analysis, and public policy implications , 2020, European Journal of Epidemiology.

[55]  M. Maathuis,et al.  Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2 , 2020, medRxiv.

[56]  Yiu Chung Lau,et al.  Temporal dynamics in viral shedding and transmissibility of COVID-19 , 2020, Nature Medicine.

[57]  Imperial College COVID-19 Response Team,et al.  Estimating the number of infections and the impact of non-pharmaceutical interventions on COVID-19 in European countries: technical description update , 2020, 2004.11342.

[58]  U. Obolski,et al.  Inferring the effective start dates of non-pharmaceutical interventions during COVID-19 outbreaks , 2020, International Journal of Infectious Diseases.

[59]  S. Bhatt,et al.  Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’ , 2020, Nature.

[60]  Gang Wu,et al.  Household transmission of SARS-CoV-2 , 2020, Journal of Infection.

[61]  C. Whittaker,et al.  Estimates of the severity of coronavirus disease 2019: a model-based analysis , 2020, The Lancet Infectious Diseases.

[62]  N. Jewell,et al.  Incidence, clinical outcomes, and transmission dynamics of severe coronavirus disease 2019 in California and Washington: prospective cohort study , 2020, BMJ.

[63]  S. Merler,et al.  Baseline Characteristics and Outcomes of 1591 Patients Infected With SARS-CoV-2 Admitted to ICUs of the Lombardy Region, Italy. , 2020, JAMA.

[64]  K. Lum,et al.  The Epidemiological Implications of Incarceration Dynamics in Jails for Community, Corrections Officer, and Incarcerated Population Risks from COVID-19 , 2020, medRxiv.

[65]  C. Whittaker,et al.  Report 9: Impact of non-pharmaceutical interventions (NPIs) to reduce COVID19 mortality and healthcare demand , 2020 .

[66]  J. Xiang,et al.  Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study , 2020, The Lancet.

[67]  Chonggang Xu,et al.  High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2 , 2020, Emerging infectious diseases.

[68]  A. Vespignani,et al.  The effect of eviction moratoria on the transmission of SARS-CoV-2 , 2020, Nature Communications.

[69]  Zunyou Wu,et al.  Characteristics of and Important Lessons From the Coronavirus Disease 2019 (COVID-19) Outbreak in China: Summary of a Report of 72 314 Cases From the Chinese Center for Disease Control and Prevention. , 2020, JAMA.

[70]  E. Lau,et al.  Serial interval of SARS-CoV-2 was shortened over time by nonpharmaceutical interventions , 2020, Science.

[71]  P. Vollmar,et al.  Virological assessment of hospitalized patients with COVID-2019 , 2020, Nature.

[72]  J. Rhee,et al.  Cluster of Coronavirus Disease Associated with Fitness Dance Classes, South Korea , 2020, Emerging infectious diseases.

[73]  D. Pigott,et al.  Crowding and the shape of COVID-19 epidemics , 2020, Nature medicine.

[74]  Wing Yin Venus Lau,et al.  Transmission interval estimates suggest pre-symptomatic spread of COVID-19 , 2020, medRxiv.

[75]  Soumitra Sengupta,et al.  Characterization and clinical course of 1000 patients with COVID-19 in New York: retrospective case series , 2020, medRxiv.

[76]  Young Joon Park,et al.  Coronavirus Disease Outbreak in Call Center, South Korea , 2020, Emerging infectious diseases.

[77]  G. Leung,et al.  First-wave COVID-19 transmissibility and severity in China outside Hubei after control measures, and second-wave scenario planning: a modelling impact assessment , 2020, The Lancet.

[78]  Luna Yue Huang,et al.  The Effect of Large-Scale Anti-Contagion Policies on the Coronavirus (COVID-19) Pandemic , 2020, medRxiv.

[79]  Ying-jian Liang,et al.  Household Transmission of SARS-CoV-2, Zhuhai, China, 2020 , 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[80]  S. Eubank,et al.  Commentary on Ferguson, et al., “Impact of Non-pharmaceutical Interventions (NPIs) to Reduce COVID-19 Mortality and Healthcare Demand” , 2020, Bulletin of Mathematical Biology.

[81]  Caitlin S Pedati,et al.  COVID-19 Among Workers in Meat and Poultry Processing Facilities - 19 States, April 2020. , 2020, MMWR. Morbidity and mortality weekly report.

[82]  L. Fang,et al.  Household secondary attack rate of COVID-19 and associated determinants in Guangzhou, China: a retrospective cohort study , 2020, The Lancet Infectious Diseases.

[83]  D. Lazer,et al.  Reshaping a nation: Mobility, commuting, and contact patterns during the COVID-19 outbreak , 2020 .

[84]  E. Lavezzo,et al.  Suppression of COVID-19 outbreak in the municipality of Vo, Italy , 2020, medRxiv.

[85]  Jing Zhao,et al.  Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia , 2020, The New England journal of medicine.

[86]  Juan Gabriel Rodríguez,et al.  Wage inequality and poverty effects of lockdown and social distancing in Europe , 2020, European Economic Review.

[87]  M. Lipsitch,et al.  Estimated Demand for US Hospital Inpatient and Intensive Care Unit Beds for Patients With COVID-19 Based on Comparisons With Wuhan and Guangzhou, China , 2020, JAMA network open.

[88]  N. G. Davies,et al.  The effect of non-pharmaceutical interventions on COVID-19 cases, deaths and demand for hospital services in the UK: a modelling study , 2020, medRxiv.

[89]  A. Vespignani,et al.  Modelling the impact of testing, contact tracing and household quarantine on second waves of COVID-19 , 2020, Nature Human Behaviour.

[90]  E. Alm,et al.  Fast spread of COVID-19 in Europe and the US and its implications: even modest public health goals require comprehensive intervention , 2020 .

[91]  Xihong Lin,et al.  Association of Public Health Interventions With the Epidemiology of the COVID-19 Outbreak in Wuhan, China. , 2020, JAMA.

[92]  K. Yuen,et al.  Clinical Characteristics of Coronavirus Disease 2019 in China , 2020, The New England journal of medicine.

[93]  Soumitra Sengupta,et al.  Characterization and clinical course of 1000 patients with coronavirus disease 2019 in New York: retrospective case series , 2020, BMJ.

[94]  Jianyun Lu,et al.  COVID-19 Outbreak Associated with Air Conditioning in Restaurant, Guangzhou, China, 2020 , 2020, Emerging infectious diseases.

[95]  N. G. Davies,et al.  Effects of non-pharmaceutical interventions on COVID-19 cases, deaths, and demand for hospital services in the UK: a modelling study , 2020, The Lancet Public Health.

[96]  P. White,et al.  COVID-19 among people experiencing homelessness in England: a modelling study , 2020, The Lancet Respiratory Medicine.

[97]  M. Prague,et al.  Population modeling of early COVID-19 epidemic dynamics in French regions and estimation of the lockdown impact on infection rate , 2020, medRxiv.

[98]  G. Meadors,et al.  Change in global transmission rates of COVID-19 through May 6 2020 , 2020, PloS one.

[99]  Peng Wu,et al.  Impact assessment of non-pharmaceutical interventions against coronavirus disease 2019 and influenza in Hong Kong: an observational study , 2020, The Lancet Public Health.

[100]  Ruifu Yang,et al.  An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China , 2020, Science.

[101]  Ting Yu,et al.  Clinical course and outcomes of critically ill patients with SARS-CoV-2 pneumonia in Wuhan, China: a single-centered, retrospective, observational study , 2020, The Lancet Respiratory Medicine.

[102]  Hsien-Ho Lin,et al.  Contact Tracing Assessment of COVID-19 Transmission Dynamics in Taiwan and Risk at Different Exposure Periods Before and After Symptom Onset , 2020, JAMA internal medicine.

[103]  J. Tate,et al.  Household Transmission of Severe Acute Respiratory Syndrome Coronavirus-2 in the United States , 2020, Clinical Infectious Diseases.

[104]  D. Feehan,et al.  Quantifying population contact patterns in the United States during the COVID-19 pandemic , 2020, Nature Communications.

[105]  A. Nande,et al.  The effect of eviction moratoriums on the transmission of SARS-CoV-2 , 2021 .