A “parallel plate” electrostatic model for bimolecular rate constants applied to electron transfer proteins

A “parallel plate” model describing the electrostatic potential energy of protein‐protein interactions is presented that provides an analytical representation of the effect of ionic strength on a bimolecular rate constant. The model takes into account the asymmetric distribution of charge on the surface of the protein and localized charges at the site of electron transfer that are modeled as elements of a parallel plate condenser. Both monopolar and dipolar interactions are included. Examples of simple (monophasic) and complex (biphasic) ionic strength dependencies obtained from experiments with several electron transfer protein systems are presented, all of which can be accommodated by the model. The simple cases do not require the use of both monopolar and dipolar terms (i.e., they can be fit well by either alone). The biphasic dependencies can be fit only by using dipolar and monopolar terms of opposite sign, which is physically unreasonable for the molecules considered. Alternatively, the high ionic strength portion of the complex dependencies can be fit using either the monopolar term alone or the complete equation; this assumes a model in which such behavior is a consequence of electron transfer mechanisms involving changes in orientation or site of reaction as the ionic strength is varied. Based on these analyses, we conclude that the principal applications of the model presented here are to provide information about the structural properties of intermediate electron transfer complexes and to quantify comparisons between related proteins or site‐specific mutants. We also conclude that the relative contributions of monopolar and dipolar effects to protein electron transfer kinetics cannot be evaluated from experimental data by present approximations.

[1]  G. Tollin,et al.  Use of laser flash photolysis time-resolved spectrophotometry to investigate interprotein and intraprotein electron transfer mechanisms. , 1993, Biophysical chemistry.

[2]  P. Karplus,et al.  Structural prototypes for an extended family of flavoprotein reductases: Comparison of phthalate dioxygenase reductase with ferredoxin reductase and ferredoxin , 1993, Protein science : a publication of the Protein Society.

[3]  Z. Salamon,et al.  Amino acid residues in Anabaena ferredoxin crucial to interaction with ferredoxin-NADP+ reductase: site-directed mutagenesis and laser flash photolysis. , 1993, Biochemistry.

[4]  B. Durham,et al.  Intracomplex electron transfer between ruthenium-cytochrome c derivatives and cytochrome c oxidase. , 1993, Biochemistry.

[5]  H. Zhou,et al.  Boundary element solution of macromolecular electrostatics: interaction energy between two proteins. , 1993, Biophysical journal.

[6]  J. Kraut,et al.  Crystal structure of a complex between electron transfer partners, cytochrome c peroxidase and cytochrome c. , 1993, Science.

[7]  G. Tollin,et al.  Kinetics of photooxidation of soluble cytochromes, HiPIP, and azurin by the photosynthetic reaction center of the purple phototrophic bacterium Rhodopseudomonas viridis. , 1993, Biochemistry.

[8]  G. Tollin,et al.  Transient kinetics of electron transfer from a variety of c-type cytochromes to plastocyanin. , 1993, Biochemistry.

[9]  V. Davidson,et al.  Preliminary crystal structure studies of a ternary electron transfer complex between a quinoprotein, a blue copper protein, and a c‐type cytochrome , 1993, Protein science : a publication of the Protein Society.

[10]  G. Tollin,et al.  Laser flash photolysis studies of electron transfer to the cytochrome b5-cytochrome c complex. , 1993, Biochemistry.

[11]  G. Tollin,et al.  A laser flash absorption spectroscopy study of Anabaena sp. PCC 7119 flavodoxin photoreduction by photosystem I particles from spinach , 1992, FEBS letters.

[12]  G. Tollin,et al.  A LASER FLASH SPECTROSCOPY STUDY OF THE KINETICS OF ELECTRON TRANSFER FROM SPINACH PHOTOSYSTEM I TO SPINACH AND ALGAL FERREDOXINS , 1992 .

[13]  N. Kostić,et al.  Photoinduced electron-transfer reaction in a ternary system involving zinc cytochrome c and plastocyanin. Interplay of monopolar and dipolar electrostatic interactions between metalloproteins. , 1992, Biochemistry.

[14]  S. Sligar,et al.  Genetic engineering of redox donor sites: measurement of intracomplex electron transfer between ruthenium-65-cytochrome b5 and cytochrome c. , 1992, Biochemistry.

[15]  F. S. Mathews,et al.  Crystal structure of an electron-transfer complex between methylamine dehydrogenase and amicyanin. , 1992, Biochemistry.

[16]  A J Olson,et al.  Electrostatic orientation of the electron-transfer complex between plastocyanin and cytochrome c. , 1991, The Journal of biological chemistry.

[17]  G. Tollin,et al.  Laser flash photolysis studies of the kinetics of reduction of ferredoxins and ferredoxin-NADP+ reductases from Anabaena PCC 7119 and spinach: electrostatic effects on intracomplex electron transfer. , 1991, Archives of biochemistry and biophysics.

[18]  G. Tollin,et al.  Intra- and intermolecular electron transfer processes in redox proteins. , 1991, Archives of biochemistry and biophysics.

[19]  H. Bellamy,et al.  Three-dimensional structure of p-cresol methylhydroxylase (flavocytochrome c) from Pseudomonas putida at 3.0-A resolution. , 1991, Biochemistry.

[20]  G. Tollin,et al.  Ionic strength dependence of the kinetics of electron transfer from bovine mitochondrial cytochrome c to bovine cytochrome c oxidase. , 1991, Biochemistry.

[21]  P. Karplus,et al.  Atomic structure of ferredoxin-NADP+ reductase: prototype for a structurally novel flavoenzyme family. , 1991, Science.

[22]  S. Redner Kinetics of Diffusion-Controlled Reactions , 1989 .

[23]  G. Tollin,et al.  Redox protein electron-transfer mechanisms: electrostatic interactions as a determinant of reaction site in c-type cytochromes. , 1989, Biochemistry.

[24]  G. Tollin,et al.  Effects of amino acid replacements in yeast iso-1 cytochrome c on heme accessibility and intracomplex electron transfer in complexes with cytochrome c peroxidase. , 1988, Biochemistry.

[25]  J J Wendoloski,et al.  Molecular dynamics of a cytochrome c-cytochrome b5 electron transfer complex. , 1987, Science.

[26]  G. Tollin,et al.  Kinetics of reduction by free flavin semiquinones of algal cytochromes and plastocyanin. , 1987, Archives of biochemistry and biophysics.

[27]  P. Weber,et al.  Electrostatic analysis of the interaction of cytochrome c with native and dimethyl ester heme substituted cytochrome b5. , 1986, Biochemistry.

[28]  G. Tollin,et al.  Electron-transfer reactions between flavodoxin semiquinone and c-type cytochromes: comparisons between various flavodoxins. , 1986, Biochemistry.

[29]  E. Getzoff,et al.  Transient kinetics of reduction of blue copper proteins by free flavin and flavodoxin semiquinones. , 1986, Biochemistry.

[30]  E. Getzoff,et al.  Kinetics of electron transfer between cytochromes c' and the semiquinones of free flavin and clostridial flavodoxin. , 1986, Biochemistry.

[31]  G. Tollin,et al.  Kinetics of reduction of high redox potential ferredoxins by the semiquinones of Clostridium pasteurianum flavodoxin and exogenous flavin mononucleotide. Electrostatic and redox potential effects. , 1985, Biochemistry.

[32]  R. Marcus,et al.  Electron transfers in chemistry and biology , 1985 .

[33]  G. Tollin,et al.  Electrostatic interactions during electron transfer reactions between c-type cytochromes and flavodoxin. , 1985, The Journal of biological chemistry.

[34]  J. A. Watkins,et al.  Electron transfer between flavodoxin semiquinone and c-type cytochromes: correlations between electrostatically corrected rate constants, redox potentials, and surface topologies. , 1984, Biochemistry.

[35]  J. A. Watkins,et al.  Electron-transfer reactions of photoreduced flavin analogues with c-type cytochromes: quantitation of steric and electrostatic factors. , 1984, Biochemistry.

[36]  J. V. Leeuwen The ionic strength dependence of the rate of a reaction between two large proteins with a dipole moment. , 1983 .

[37]  F. Richards,et al.  Electrostatic orientation during electron transfer between flavodoxin and cytochrome c , 1983, Nature.

[38]  G. Tollin,et al.  Transient kinetics of electron transfer reactions of flavodoxin: ionic strength dependence of semiquinone oxidation by cytochrome c, ferricyanide, and ferric ethylenediaminetetraacetic acid and computer modeling of reaction complexes. , 1982, Biochemistry.

[39]  A. Szabó,et al.  Role of diffusion in ligand binding to macromolecules and cell-bound receptors. , 1982, Biophysical journal.

[40]  A. Szabó,et al.  Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints. , 1981, Biophysical journal.

[41]  E. Veerman,et al.  The ionic strength dependence of the rate of a reaction between a small ion and a large ion with a dipole moment. , 1981, Biochimica et biophysica acta.

[42]  R. Sheridan,et al.  The active site electrostatic potential of human carbonic anhydrase , 1981 .

[43]  J. Kraut,et al.  A hypothetical model of the cytochrome c peroxidase . cytochrome c electron transfer complex. , 1980, The Journal of biological chemistry.

[44]  D. Rees Experimental evaluation of the effective dielectric constant of proteins. , 1980, Journal of molecular biology.

[45]  H. Gray,et al.  Distances of electron transfer to and from metalloprotein redox sites in reactions with inorganic complexes , 1980 .

[46]  W. Koppenol Effect of a molecular dipole on the ionic strength dependence of a biomolecular rate constant. Identification of the site of reaction. , 1980, Biophysical journal.

[47]  F. Millett,et al.  Interaction between cytochrome c and cytochrome b5. , 1979, Biochemistry.

[48]  M. Cusanovich,et al.  The kinetics of photooxidation of c-type cytochromes by Rhodospirillum rubrum reaction centers. , 1979, Archives of biochemistry and biophysics.

[49]  S Wherland,et al.  Metalloprotein electron transfer reactions: analysis of reactivity of horse heart cytochrome c with inorganic complexes. , 1976, Proceedings of the National Academy of Sciences of the United States of America.

[50]  J. Michael Schurr,et al.  Orientation constraints and rotational diffusion in bimolecular solution kinetics. A simplification , 1976 .

[51]  F R Salemme,et al.  An hypothetical structure for an intermolecular electron transfer complex of cytochromes c and b5. , 1976, Journal of molecular biology.

[52]  Kenneth S. Schmitz,et al.  Role of orientation constraints and rotational diffusion in bimolecular solution kinetics , 1972 .

[53]  Walter H. Stockmayer,et al.  Kinetics of Diffusion‐Controlled Reaction between Chemically Asymmetric Molecules. I. General Theory , 1971 .

[54]  R. Alberty,et al.  The Influence of the Net Protein Charge on the Rate of Formation of Enzyme–Substrate Complexes. , 1959 .

[55]  Robert A. Alberty,et al.  Application of the Theory of Diffusion-controlled Reactions to Enzyme Kinetics , 1958 .

[56]  M. Eigen Über die Kinetik sehr schnell verlaufender Ionenreaktionen in wässeriger Lösung. , 1954 .

[57]  E. S. Amis,et al.  The Derivation of a General Kinetic Equation for Reaction Between Ions and Dipolar Molecules , 1942 .

[58]  L. Onsager Electric Moments of Molecules in Liquids , 1936 .

[59]  J. Kirkwood,et al.  Theory of Solutions of Molecules Containing Widely Separated Charges with Special Application to Zwitterions , 1934 .

[60]  R. Fuoss Influence of Dipole Fields between Solute Molecules. I. On Osmotic Properties , 1934 .

[61]  G. Tollin,et al.  A comparative laser-flash absorption spectroscopy study of algal plastocyanin and cytochrome c552 photooxidation by photosystem I particles from spinach. , 1992, European journal of biochemistry.

[62]  K. Sharp,et al.  Electrostatic interactions in macromolecules: theory and applications. , 1990, Annual review of biophysics and biophysical chemistry.

[63]  J. A. Watkins SPECTRAL AND KINETIC PROPERTIES OF CHLOROBIUM THIOSULFATOPHILUM CYTOCHROME C-555 (ELECTROSTATICS, REDOX KINETICS, CIRCULAR DICHROISM). , 1986 .

[64]  J. W. van Leeuwen The ionic strength dependence of the rate of a reaction between two large proteins with a dipole moment. , 1983, Biochimica et biophysica acta.

[65]  M. Ryan,et al.  Molecular interpretation of kinetic-ionic strength effects. , 1981, Journal of inorganic biochemistry.

[66]  Jacopo Tomasi,et al.  Electronic Molecular Structure, Reactivity and Intermolecular Forces: An Euristic Interpretation by Means of Electrostatic Molecular Potentials , 1978 .

[67]  E. H ckel,et al.  Zur Theorie der Elektrolyte , 1924 .