Integrated mRNA and small RNA sequencing reveals microRNA regulatory network associated with internode elongation in sugarcane (Saccharum officinarum L.)

[1]  Yanmei Wang,et al.  Identification and Profiling of microRNAs Expressed in Elongating Cotton Fibers Using Small RNA Deep Sequencing , 2016, Front. Plant Sci..

[2]  Mingcai Zhang,et al.  Analysis of differential expression of genes induced by ethephon in elongating internodes of maize plants , 2016 .

[3]  Kai Cui,et al.  Transcriptome Sequencing and Analysis for Culm Elongation of the World’s Largest Bamboo (Dendrocalamus sinicus) , 2016, PloS one.

[4]  X. Tao,et al.  Genomic profiling of exogenous abscisic acid-responsive microRNAs in tomato (Solanum lycopersicum) , 2016, BMC Genomics.

[5]  Y. Que,et al.  Selection of Reference Genes for Normalization of MicroRNA Expression by RT-qPCR in Sugarcane Buds under Cold Stress , 2016, Front. Plant Sci..

[6]  Meng Zhang,et al.  High-throughput sequencing reveals miRNA effects on the primary and secondary production properties in long-term subcultured Taxus cells , 2015, Front. Plant Sci..

[7]  Xiangming Xie,et al.  Analysis of miRNAs and Their Targets during Adventitious Shoot Organogenesis of Acacia crassicarpa , 2014, PloS one.

[8]  Xueping Li,et al.  Transcriptome Sequencing and Analysis of the Fast Growing Shoots of Moso Bamboo (Phyllostachys edulis) , 2013, PloS one.

[9]  A. Molina,et al.  Disease resistance or growth: the role of plant hormones in balancing immune responses and fitness costs , 2013, Front. Plant Sci..

[10]  F. Nogueira,et al.  Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth , 2013, Journal of experimental botany.

[11]  Clícia Grativol,et al.  High-Throughput Sequencing of Small RNA Transcriptome Reveals Salt Stress Regulated MicroRNAs in Sugarcane , 2013, PloS one.

[12]  I. Baldwin,et al.  High levels of jasmonic acid antagonize the biosynthesis of gibberellins and inhibit the growth of Nicotiana attenuata stems. , 2013, The Plant journal : for cell and molecular biology.

[13]  M. Y. Barozai,et al.  PROFILING THE CARROT (DAUCUS CAROTA L.) MICRORNAS AND THEIR TARGETS , 2013 .

[14]  M. S. Carneiro,et al.  Effects of drought on the microtranscriptome of field-grown sugarcane plants , 2012, Planta.

[15]  T. Bouma,et al.  Waves and high nutrient loads jointly decrease survival and separately affect morphological and biomechanical properties in the seagrass Zostera noltii , 2012 .

[16]  Z. Ye,et al.  Tomato SlDREB gene restricts leaf expansion and internode elongation by downregulating key genes for gibberellin biosynthesis , 2012, Journal of experimental botany.

[17]  C. Pieterse,et al.  Hormonal modulation of plant immunity. , 2012, Annual review of cell and developmental biology.

[18]  Kai Cui,et al.  Temporal and spatial profiling of internode elongation-associated protein expression in rapidly growing culms of bamboo. , 2012, Journal of proteome research.

[19]  J. Thomson,et al.  Sugarcane Internode Composition During Crop Development , 2012, BioEnergy Research.

[20]  Mark H. Wright,et al.  Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa , 2011, Nature communications.

[21]  C. Kutter,et al.  miR393 and Secondary siRNAs Regulate Expression of the TIR1/AFB2 Auxin Receptor Clade and Auxin-Related Development of Arabidopsis Leaves1[W][OA] , 2011, Plant Physiology.

[22]  M. Kowalska,et al.  Evolution of cytokinin biosynthesis and degradation. , 2011, Journal of experimental botany.

[23]  Iain S. Donnison,et al.  Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes , 2011, Journal of experimental botany.

[24]  M. Crespi,et al.  miR390, Arabidopsis TAS3 tasiRNAs, and Their AUXIN RESPONSE FACTOR Targets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth[W] , 2010, Plant Cell.

[25]  C. Beveridge,et al.  Strigolactones: the new class of branching hormones , 2010 .

[26]  J. Batley,et al.  Plant genome sequencing: applications for crop improvement. , 2010, Plant Biotechnology Journal.

[27]  Peter J. Davies,et al.  PLANT HORMONES: Biosynthesis, Signal Transduction, Action , 2010 .

[28]  S. Jackson,et al.  Next-generation sequencing technologies and their implications for crop genetics and breeding. , 2009, Trends in biotechnology.

[29]  M. Gerstein,et al.  RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.

[30]  B. Williams,et al.  Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.

[31]  Muhammad Hamayun,et al.  EFFECT OF NITROGEN AND SILICON NUTRITION ON BIOACTIVE GIBBERELLIN AND GROWTH OF RICE UNDER FIELD CONDITIONS , 2008 .

[32]  T. Tew,et al.  Genetic Improvement of Sugarcane (Saccharum spp.) as an Energy Crop , 2008 .

[33]  Kotaro Miura,et al.  A Major QTL Confers Rapid Internode Elongation in Response to Water Rise in Deepwater Rice , 2007 .

[34]  Faye M. Rosin,et al.  RNA Interference Silencing of Chalcone Synthase, the First Step in the Flavonoid Biosynthesis Pathway, Leads to Parthenocarpic Tomato Fruits[C] , 2007, Plant Physiology.

[35]  R. Tanaka,et al.  Tetrapyrrole biosynthesis in higher plants. , 2007, Annual review of plant biology.

[36]  Oriana Silvestroni,et al.  Auxin Synthesis-Encoding Transgene Enhances Grape Fecundity1[OA] , 2007, Plant Physiology.

[37]  C. Lapierre,et al.  Flavonoid Accumulation in Arabidopsis Repressed in Lignin Synthesis Affects Auxin Transport and Plant Growth , 2007, The Plant Cell Online.

[38]  Yukihisa Shimada,et al.  GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. , 2006, The Plant journal : for cell and molecular biology.

[39]  U. Mathesius,et al.  Silencing the Flavonoid Pathway in Medicago truncatula Inhibits Root Nodule Formation and Prevents Auxin Transport Regulation by Rhizobia[W] , 2006, The Plant Cell Online.

[40]  N. Chua,et al.  MicroRNA Directs mRNA Cleavage of the Transcription Factor NAC1 to Downregulate Auxin Signals for Arabidopsis Lateral Root Development , 2005, The Plant Cell Online.

[41]  Tao Chen,et al.  OsGLU1, A Putative Membrane-bound Endo-1,4-ß-D-glucanase from Rice, Affects Plant Internode Elongation , 2005, Plant Molecular Biology.

[42]  D. Bartel,et al.  Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. , 2004, Molecular cell.

[43]  A. Hager.  Role of the plasma membrane H+-ATPase in auxin-induced elongation growth: historical and new aspects , 2003, Journal of Plant Research.

[44]  H. V. Van Onckelen,et al.  Adventitious shoot regeneration from vegetative shoot apices in pear and putative role of cytokinin accumulation in the morphogenetic process , 2002, Plant Cell, Tissue and Organ Culture.

[45]  G. Hagen,et al.  Auxin-responsive gene expression: genes, promoters and regulatory factors , 2002, Plant Molecular Biology.

[46]  J. B. Reid,et al.  The quantitative relationship between gibberellin A1 and internode growth in Pisum sativum L. , 1986, Planta.

[47]  B. Hirel,et al.  Glutamate dehydrogenase in plants: is there a new story for an old enzyme? , 2003 .

[48]  Michael Riefler,et al.  Structure and function of cytokinin oxidase/dehydrogenase genes of maize, rice, Arabidopsis and other species , 2003, Journal of Plant Research.

[49]  G. Hagen,et al.  The Roles of Auxin Response Factor Domains in Auxin-Responsive Transcription Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.008417. , 2003, The Plant Cell Online.

[50]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..

[51]  B. Havsteen,et al.  The biochemistry and medical significance of the flavonoids. , 2002, Pharmacology & therapeutics.

[52]  C. Koncz,et al.  Brassinosteroids and Plant Steroid Hormone Signaling Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001461. , 2002, The Plant Cell Online.

[53]  J. L. Pérez-Lloréns,et al.  Effects of light availability on growth, architecture and nutrient content of the seagrass Zostera noltii Hornem , 2002 .

[54]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[55]  C. Rossell,et al.  Integrated production of biodegradable plastic, sugar and ethanol , 2001, Applied Microbiology and Biotechnology.

[56]  C. Helliwell,et al.  The CYP88A cytochrome P450, ent-kaurenoic acid oxidase, catalyzes three steps of the gibberellin biosynthesis pathway. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[57]  D. Brar,et al.  Genes/QTLs affecting flood tolerance in rice , 2000, Theoretical and Applied Genetics.

[58]  J. Casal,et al.  Temperature-dependent internode elongation in vegetative plants of Arabidopsis thaliana lacking phytochrome B and cryptochrome 1 , 2000, Planta.

[59]  S. Clouse,et al.  BRASSINOSTEROIDS: Essential Regulators of Plant Growth and Development. , 1998, Annual review of plant physiology and plant molecular biology.

[60]  N. Crawford,et al.  Nitrate: nutrient and signal for plant growth. , 1995, The Plant cell.

[61]  T. Hirano,et al.  Involvement of the decrease in levels of abscisic acid in the internodal elongation of submerged floating rice , 1995 .

[62]  P. Davis,et al.  The plant hormones : Their nature, occurrence, and functions , 1995 .

[63]  P. J. Davies.  The Plant Hormones: Their Nature, Occurrence, and Functions , 1987 .

[64]  Peter J. Davies,et al.  Plant Hormones and their Role in Plant Growth and Development , 1987, Springer Netherlands.

[65]  R. Cleland.  Auxin and Cell Elongation , 1987 .

[66]  J. Metraux,et al.  The role of ethylene in the growth response of submerged deep water rice. , 1983, Plant physiology.

[67]  C. Beveridge,et al.  Strigolactones: the new class of branching hormones , 2010 .

[68]  Thomas D. Schmittgen,et al.  Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .