Hidden Markov random field model and Broyden–Fletcher–Goldfarb–Shanno algorithm for brain image segmentation

Abstract Many routine medical examinations produce images of patients suffering from various pathologies. With the huge number of medical images, the manual analysis and interpretation became a tedious task. Thus, automatic image segmentation became essential for diagnosis assistance. Segmentation consists in dividing the image into homogeneous and significant regions. We focus on hidden Markov random fields referred to as HMRF to model the problem of segmentation. This modelisation leads to a classical function minimisation problem. Broyden–Fletcher–Goldfarb–Shanno algorithm referred to as BFGS is one of the most powerful methods to solve unconstrained optimisation problem. In this paper, we investigate the combination of HMRF and BFGS algorithm to perform the segmentation operation. The proposed method shows very good segmentation results comparing with well-known approaches. The tests are conducted on brain magnetic resonance image databases (BrainWeb and IBSR) largely used to objectively confront the results obtained. The well-known Dice coefficient (DC) was used as similarity metric. The experimental results show that, in many cases, our proposed method approaches the perfect segmentation with a Dice Coefficient above .9. Moreover, it generally outperforms other methods in the tests conducted.

[1]  Aboul Ella Hassanien,et al.  Brain MRI Tumor Segmentation with 3D Intracranial Structure Deformation Features , 2016, IEEE Intelligent Systems.

[2]  Tony F. Chan,et al.  Active contours without edges , 2001, IEEE Trans. Image Process..

[3]  D. Shanno Conditioning of Quasi-Newton Methods for Function Minimization , 1970 .

[4]  L. R. Dice Measures of the Amount of Ecologic Association Between Species , 1945 .

[5]  Guido Gerig,et al.  Level-set evolution with region competition: automatic 3-D segmentation of brain tumors , 2002, Object recognition supported by user interaction for service robots.

[6]  Reza Azmi,et al.  Brain tissue segmentation in MR images based on a hybrid of MRF and social algorithms , 2012, Medical Image Anal..

[7]  Karl J. Friston,et al.  Unified segmentation , 2005, NeuroImage.

[8]  Stephen M. Smith,et al.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm , 2001, IEEE Transactions on Medical Imaging.

[9]  Yaozong Gao,et al.  Segmentation of neonatal brain MR images using patch-driven level sets , 2014, NeuroImage.

[10]  Samy Ait-Aoudia,et al.  Hidden Markov Random Fields and Swarm Particles: A Winning Combination in Image Segmentation , 2014 .

[11]  M. Stella Atkins,et al.  Fully automatic segmentation of the brain in MRI , 1998, IEEE Transactions on Medical Imaging.

[12]  Wen-June Wang,et al.  Multispectral MR images segmentation based on fuzzy knowledge and modified seeded region growing. , 2012, Magnetic resonance imaging.

[13]  William C. Davidon,et al.  Variable Metric Method for Minimization , 1959, SIAM J. Optim..

[14]  Alireza Behrad,et al.  Automatic liver segmentation in MRI images using an iterative watershed algorithm and artificial neural network , 2012, Biomed. Signal Process. Control..

[15]  Alex Rovira,et al.  MARGA: Multispectral Adaptive Region Growing Algorithm for brain extraction on axial MRI , 2014, Comput. Methods Programs Biomed..

[16]  Demetri Terzopoulos,et al.  Deformable models in medical image analysis: a survey , 1996, Medical Image Anal..

[17]  Kumar Rajamani,et al.  Brain tumor extraction from MRI brain images using marker based watershed algorithm , 2015, 2015 International Conference on Advances in Computing, Communications and Informatics (ICACCI).

[18]  Richard Szeliski,et al.  A Comparative Study of Energy Minimization Methods for Markov Random Fields with Smoothness-Based Priors , 2008, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[19]  R. B. Potts Some generalized order-disorder transformations , 1952, Mathematical Proceedings of the Cambridge Philosophical Society.

[20]  Jun Liu,et al.  Image Segmentation Using a Local GMM in a Variational Framework , 2012, Journal of Mathematical Imaging and Vision.

[21]  S. Ait-Aoudia,et al.  Medical Image Segmentation Using Particle Swarm Optimization , 2014, 2014 18th International Conference on Information Visualisation.

[22]  J. Alison Noble,et al.  MAP MRF joint segmentation and registration of medical images , 2003, Medical Image Anal..

[23]  Alan C. Evans,et al.  BrainWeb: Online Interface to a 3D MRI Simulated Brain Database , 1997 .

[24]  J. M. Hammersley,et al.  Markov fields on finite graphs and lattices , 1971 .

[25]  C. G. Broyden The Convergence of a Class of Double-rank Minimization Algorithms 1. General Considerations , 1970 .

[26]  David Eberly,et al.  Derivative Approximation by Finite Differences , 2016 .

[27]  David F. Shanno,et al.  An example of numerical nonconvergence of a variable-metric method , 1985 .

[28]  Donald Geman,et al.  Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images , 1984, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[29]  P. Natarajan,et al.  Tumor detection using threshold operation in MRI brain images , 2012, 2012 IEEE International Conference on Computational Intelligence and Computing Research.

[30]  R. Fletcher,et al.  A New Approach to Variable Metric Algorithms , 1970, Comput. J..

[31]  Roger Fletcher,et al.  A Rapidly Convergent Descent Method for Minimization , 1963, Comput. J..

[32]  Yuhui Zheng,et al.  An improved anisotropic hierarchical fuzzy c-means method based on multivariate student t-distribution for brain MRI segmentation , 2016, Pattern Recognit..

[33]  D. Goldfarb A family of variable-metric methods derived by variational means , 1970 .

[34]  Stephen P. Boyd,et al.  Convex Optimization , 2004, Algorithms and Theory of Computation Handbook.

[35]  Dominique Michelucci,et al.  Hidden Markov Random Fields and Direct Search Methods for Medical Image Segmentation , 2016, ICPRAM.

[36]  Hayet Farida Merouani,et al.  Automatic segmentation of brain MRI through stationary wavelet transform and random forests , 2014, Pattern Analysis and Applications.

[37]  K.J. Shanthi,et al.  International Conference on Intelligent and Advanced Systems 2007 Skull Stripping and Automatic Segmentation of Brain Mri Using Seed Growth and Threshold Techniques , 2022 .