Minimal Basis Iterative Stockholder: Atoms in Molecules for Force-Field Development.
暂无分享,去创建一个
P. Ayers | Farnaz Heidar-Zadeh | T. Verstraelen | V. Van Speybroeck | L. Vanduyfhuys | M. Waroquier | S. Vandenbrande | Farnaz Heidar‐Zadeh
[1] T. Bučko,et al. C6 Coefficients and Dipole Polarizabilities for All Atoms and Many Ions in Rows 1-6 of the Periodic Table. , 2016, Journal of chemical theory and computation.
[2] Jonah Z. Vilseck,et al. Biomolecular Force Field Parameterization via Atoms-in-Molecule Electron Density Partitioning , 2016, Journal of chemical theory and computation.
[3] G. Karlström,et al. Method for Slater-Type Density Fitting for Intermolecular Electrostatic Interactions with Charge Overlap. I. The Model. , 2016, Journal of chemical theory and computation.
[4] Paul L. A. Popelier,et al. QCTFF: on the construction of a novel protein force field , 2015 .
[5] G. B. Suffritti,et al. Partial Charges in Periodic Systems: Improving Electrostatic Potential (ESP) Fitting via Total Dipole Fluctuations and Multiframe Approaches. , 2015, Journal of chemical theory and computation.
[6] Andrew C. Simmonett,et al. Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions. , 2015, The journal of physical chemistry. A.
[7] Nohad Gresh,et al. General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field , 2015, Journal of chemical theory and computation.
[8] S. Hamad,et al. Atomic charges for modeling metal–organic frameworks: Why and how , 2015, 1802.08771.
[9] P. Ayers,et al. How pervasive is the Hirshfeld partitioning? , 2015, The Journal of chemical physics.
[10] P. Ayers,et al. Direct computation of parameters for accurate polarizable force fields. , 2014, The Journal of chemical physics.
[11] J. P. Grossman,et al. Anton 2: Raising the Bar for Performance and Programmability in a Special-Purpose Molecular Dynamics Supercomputer , 2014, SC14: International Conference for High Performance Computing, Networking, Storage and Analysis.
[12] A. Stone,et al. Distributed Multipoles from a Robust Basis-Space Implementation of the Iterated Stockholder Atoms Procedure. , 2014, Journal of chemical theory and computation.
[13] D. Truhlar,et al. Screened Electrostatic Interactions in Molecular Mechanics. , 2014, Journal of chemical theory and computation.
[14] S. Grimme. A General Quantum Mechanically Derived Force Field (QMDFF) for Molecules and Condensed Phase Simulations. , 2014, Journal of chemical theory and computation.
[15] T. Bučko,et al. Extending the applicability of the Tkatchenko-Scheffler dispersion correction via iterative Hirshfeld partitioning. , 2014, The Journal of chemical physics.
[16] Ye Mei,et al. Some practical approaches to treating electrostatic polarization of proteins. , 2014, Accounts of chemical research.
[17] R. Altman,et al. Cloud-based simulations on Google Exacycle reveal ligand-modulation of GPCR activation pathways , 2013, Nature chemistry.
[18] T. Bučko,et al. Improved Density Dependent Correction for the Description of London Dispersion Forces. , 2013, Journal of chemical theory and computation.
[19] Tom K. Woo,et al. Fast and accurate electrostatics in metal organic frameworks with a robust charge equilibration parameterization for high-throughput virtual screening of gas adsorption , 2013 .
[20] Louis P. Lee,et al. Polarized Protein-Specific Charges from Atoms-in-Molecule Electron Density Partitioning , 2013, Journal of chemical theory and computation.
[21] Li-Chiang Lin,et al. Large-scale screening of zeolite structures for CO2 membrane separations. , 2013, Journal of the American Chemical Society.
[22] T Verstraelen,et al. Hirshfeld-E Partitioning: AIM Charges with an Improved Trade-off between Robustness and Accurate Electrostatics. , 2013, Journal of chemical theory and computation.
[23] T Verstraelen,et al. ACKS2: atom-condensed Kohn-Sham DFT approximated to second order. , 2013, The Journal of chemical physics.
[24] Patrick Bultinck,et al. Extending Hirshfeld‐I to bulk and periodic materials , 2013, J. Comput. Chem..
[25] Alexander D. MacKerell,et al. Six-site polarizable model of water based on the classical Drude oscillator. , 2013, The Journal of chemical physics.
[26] Neeraj Rai,et al. Transferable potentials for phase equilibria. 10. Explicit-hydrogen description of substituted benzenes and polycyclic aromatic compounds. , 2013, The journal of physical chemistry. B.
[27] Pavel Hobza,et al. Benchmark Calculations of Noncovalent Interactions of Halogenated Molecules. , 2012, Journal of chemical theory and computation.
[28] P. Ayers,et al. The conformational sensitivity of iterative stockholder partitioning schemes , 2012 .
[29] T. Verstraelen,et al. Ab Initio Parametrized Force Field for the Flexible Metal-Organic Framework MIL-53(Al). , 2012, Journal of chemical theory and computation.
[30] David S Sholl,et al. Improved Atoms-in-Molecule Charge Partitioning Functional for Simultaneously Reproducing the Electrostatic Potential and Chemical States in Periodic and Nonperiodic Materials. , 2012, Journal of chemical theory and computation.
[31] Sankar Nair,et al. Finding MOFs for highly selective CO2/N2 adsorption using materials screening based on efficient assignment of atomic point charges. , 2012, Journal of the American Chemical Society.
[32] Donald G Truhlar,et al. Charge Model 5: An Extension of Hirshfeld Population Analysis for the Accurate Description of Molecular Interactions in Gaseous and Condensed Phases. , 2012, Journal of chemical theory and computation.
[33] Toon Verstraelen,et al. Assessment of Atomic Charge Models for Gas-Phase Computations on Polypeptides. , 2012, Journal of chemical theory and computation.
[34] T. Verstraelen,et al. Computation of Charge Distribution and Electrostatic Potential in Silicates with the Use of Chemical Potential Equalization Models , 2012 .
[35] Pavel Hobza,et al. Advanced Corrections of Hydrogen Bonding and Dispersion for Semiempirical Quantum Mechanical Methods. , 2012, Journal of chemical theory and computation.
[36] Yingkai Zhang,et al. Directional Dependence of Hydrogen Bonds: a Density-based Energy Decomposition Analysis and Its Implications on Force Field Development. , 2011, Journal of chemical theory and computation.
[37] C. Corminboeuf,et al. Comprehensive Benchmarking of a Density-Dependent Dispersion Correction. , 2011, Journal of chemical theory and computation.
[38] Berhane Temelso,et al. Benchmark structures and binding energies of small water clusters with anharmonicity corrections. , 2011, The journal of physical chemistry. A.
[39] Mahmoud A. A. Ibrahim,et al. Molecular mechanical study of halogen bonding in drug discovery , 2011, J. Comput. Chem..
[40] Pavel Hobza,et al. S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures , 2011, Journal of chemical theory and computation.
[41] Paul W. Ayers,et al. A self‐consistent Hirshfeld method for the atom in the molecule based on minimization of information loss , 2011, J. Comput. Chem..
[42] Bernd Engels,et al. Accurate Intermolecular Potentials with Physically Grounded Electrostatics. , 2011, Journal of chemical theory and computation.
[43] Stefan Grimme,et al. Effect of the damping function in dispersion corrected density functional theory , 2011, J. Comput. Chem..
[44] David S Sholl,et al. Chemically Meaningful Atomic Charges That Reproduce the Electrostatic Potential in Periodic and Nonperiodic Materials. , 2010, Journal of chemical theory and computation.
[45] Clemence Corminboeuf,et al. A System-Dependent Density-Based Dispersion Correction. , 2010, Journal of chemical theory and computation.
[46] N. A. Romero,et al. Electronic structure calculations with GPAW: a real-space implementation of the projector augmented-wave method , 2010, Journal of physics. Condensed matter : an Institute of Physics journal.
[47] S. Grimme,et al. A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. , 2010, The Journal of chemical physics.
[48] Paul W Ayers,et al. Density-based energy decomposition analysis for intermolecular interactions with variationally determined intermediate state energies. , 2009, The Journal of chemical physics.
[49] R. Wheatley,et al. Atomic charge densities generated using an iterative stockholder procedure. , 2009, The Journal of chemical physics.
[50] Toon Verstraelen,et al. The electronegativity equalization method and the split charge equilibration applied to organic systems: parametrization, validation, and comparison. , 2009, The Journal of chemical physics.
[51] Michael Devereux,et al. Toward an ab initio fragment database for bioisosterism: Dependence of QCT properties on level of theory, conformation, and chemical environment , 2009, J. Comput. Chem..
[52] D. L. Cooper,et al. Comparison of the Hirshfeld-I and iterated stockholder atoms in molecules schemes. , 2009, Physical chemistry chemical physics : PCCP.
[53] A. Tkatchenko,et al. Accurate molecular van der Waals interactions from ground-state electron density and free-atom reference data. , 2009, Physical review letters.
[54] Patrick Bultinck,et al. Electrostatic Potentials from Self-Consistent Hirshfeld Atomic Charges. , 2009, Journal of chemical theory and computation.
[55] R. Wheatley,et al. Redefining the atom: atomic charge densities produced by an iterative stockholder approach. , 2008, Chemical communications.
[56] Maurice Leslie,et al. DL_MULTI—A molecular dynamics program to use distributed multipole electrostatic models to simulate the dynamics of organic crystals , 2008 .
[57] P. Mankoo,et al. The vibrational proton potential in bulk liquid water and ice. , 2008, The Journal of chemical physics.
[58] A. Becke,et al. Exchange-hole dipole moment and the dispersion interaction revisited. , 2007, The Journal of chemical physics.
[59] Arieh Warshel,et al. Polarizable Force Fields: History, Test Cases, and Prospects. , 2007, Journal of chemical theory and computation.
[60] Joost VandeVondele,et al. Gaussian basis sets for accurate calculations on molecular systems in gas and condensed phases. , 2007, The Journal of chemical physics.
[61] K. Tiels,et al. Uniqueness and basis set dependence of iterative Hirshfeld charges , 2007 .
[62] Nohad Gresh,et al. Key role of the polarization anisotropy of water in modeling classical polarizable force fields. , 2007, The journal of physical chemistry. A.
[63] Patrick Bultinck,et al. Critical analysis and extension of the Hirshfeld atoms in molecules. , 2007, The Journal of chemical physics.
[64] Weitao Yang,et al. Fitting Molecular Electrostatic Potentials from Quantum Mechanical Calculations. , 2007, Journal of chemical theory and computation.
[65] G. Férey,et al. Charge distribution in metal organic framework materials: transferability to a preliminary molecular simulation study of the CO(2) adsorption in the MIL-53 (Al) system. , 2007, Physical chemistry chemical physics : PCCP.
[66] M. Parrinello,et al. Canonical sampling through velocity rescaling. , 2007, The Journal of chemical physics.
[67] G. Frenking,et al. Orbital overlap and chemical bonding. , 2006, Chemistry.
[68] T. Darden,et al. Generalization of the Gaussian electrostatic model: extension to arbitrary angular momentum, distributed multipoles, and speedup with reciprocal space methods. , 2006, The Journal of chemical physics.
[69] P. Kollman,et al. Automatic atom type and bond type perception in molecular mechanical calculations. , 2006, Journal of molecular graphics & modelling.
[70] M. Alderton,et al. Distributed multipole analysis , 2006 .
[71] T. Darden,et al. Towards a force field based on density fitting. , 2006, The Journal of chemical physics.
[72] Mark A. Spackman,et al. The use of the promolecular charge density to approximate the penetration contribution to intermolecular electrostatic energies , 2006 .
[73] Matthias Krack,et al. Pseudopotentials for H to Kr optimized for gradient-corrected exchange-correlation functionals , 2005 .
[74] M. V. Subbotin,et al. A quantum mechanical polarizable force field for biomolecular interactions , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[75] Michele Parrinello,et al. Quickstep: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach , 2005, Comput. Phys. Commun..
[76] Paul W Ayers,et al. What is an atom in a molecule? , 2005, The journal of physical chemistry. A.
[77] K. Jacobsen,et al. Real-space grid implementation of the projector augmented wave method , 2004, cond-mat/0411218.
[78] Greg L. Hura,et al. Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew. , 2004, The Journal of chemical physics.
[79] C. Serre,et al. Hydrogen adsorption in the nanoporous metal-benzenedicarboxylate M(OH)(O2C-C6H4-CO2) (M = Al3+, Cr3+), MIL-53. , 2003, Chemical communications.
[80] P. Geerlings,et al. Conceptual density functional theory. , 2003, Chemical reviews.
[81] G. Costantino,et al. The role of electrostatic interaction in the molecular recognition of selective agonists to metabotropic glutamate receptors , 2003, Proteins.
[82] J. VandeVondele,et al. An efficient orbital transformation method for electronic structure calculations , 2003 .
[83] Karsten W. Jacobsen,et al. An object-oriented scripting interface to a legacy electronic structure code , 2002, Comput. Sci. Eng..
[84] J. Ilja Siepmann,et al. Vapor–liquid equilibria of mixtures containing alkanes, carbon dioxide, and nitrogen , 2001 .
[85] P. Ayers. Atoms in molecules, an axiomatic approach. I. Maximum transferability , 2000 .
[86] R. Parr,et al. Information theory, atoms in molecules, and molecular similarity. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[87] Visvaldas Kairys,et al. Evaluation of the charge penetration energy between non-orthogonal molecular orbitals using the Spherical Gaussian Overlap approximation , 1999 .
[88] J. G. Snijders,et al. Towards an order-N DFT method , 1998 .
[89] Peter A. Kollman,et al. Application of the RESP Methodology in the Parametrization of Organic Solvents , 1998 .
[90] J. Reimers,et al. Unit cells for the simulation of hexagonal ice , 1997 .
[91] P. Gill. Extraction of Stewart Atoms from Electron Densities , 1996 .
[92] M. Teter,et al. Separable dual-space Gaussian pseudopotentials. , 1995, Physical review. B, Condensed matter.
[93] P. Kollman,et al. A well-behaved electrostatic potential-based method using charge restraints for deriving atomic char , 1993 .
[94] A. Warshel,et al. Frozen density functional approach for ab initio calculations of solvated molecules , 1993 .
[95] A. Becke. Density-functional thermochemistry. III. The role of exact exchange , 1993 .
[96] Ernest R. Davidson,et al. A test of the Hirshfeld definition of atomic charges and moments , 1992 .
[97] L. Pacios. A simplified representation of atomic electron densities and electrostatic potentials , 1991 .
[98] R. Bader,et al. A quantum theory of molecular structure and its applications , 1991 .
[99] C. Breneman,et al. Determining atom‐centered monopoles from molecular electrostatic potentials. The need for high sampling density in formamide conformational analysis , 1990 .
[100] A. Becke. A multicenter numerical integration scheme for polyatomic molecules , 1988 .
[101] Parr,et al. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. , 1988, Physical review. B, Condensed matter.
[102] Cheng Chang,et al. Properties of atoms in molecules: atomic volumes , 1987 .
[103] F. Weinhold,et al. Natural population analysis , 1985 .
[104] P. Kollman,et al. An approach to computing electrostatic charges for molecules , 1984 .
[105] Wen-ping Wang. Fixed-shell statistical atomic models with piecewise exponentially decaying electron densities , 1982 .
[106] J. Connolly,et al. On first‐row diatomic molecules and local density models , 1979 .
[107] R. Parr,et al. Statistical atomic models with piecewise exponentially decaying electron densities , 1977 .
[108] F. L. Hirshfeld. Bonded-atom fragments for describing molecular charge densities , 1977 .
[109] Evert Jan Baerends,et al. Self-consistent molecular Hartree—Fock—Slater calculations I. The computational procedure , 1973 .
[110] J. Pople,et al. Self‐Consistent Molecular‐Orbital Methods. IX. An Extended Gaussian‐Type Basis for Molecular‐Orbital Studies of Organic Molecules , 1971 .
[111] R. E. Watson. Analytic Hartree-Fock Solutions for O = , 1958 .
[112] Robert S. Mulliken,et al. Electronic Population Analysis on LCAO–MO Molecular Wave Functions. II. Overlap Populations, Bond Orders, and Covalent Bond Energies , 1955 .
[113] P. Löwdin. On the Non‐Orthogonality Problem Connected with the Use of Atomic Wave Functions in the Theory of Molecules and Crystals , 1950 .
[114] J. C. Slater. Atomic Shielding Constants , 1930 .
[115] Joost VandeVondele,et al. cp2k: atomistic simulations of condensed matter systems , 2014 .
[116] Jean-Philip Piquemal,et al. Gaussian Multipole Model (GMM). , 2010, Journal of chemical theory and computation.
[117] P. Blöchl,et al. Projector augmented wave method:ab initio molecular dynamics with full wave functions , 2003 .
[118] R. Stewart. V. One‐Electron Density Functions and Many‐Centered Finite Multipole Expansions , 1977 .
[119] Peter Politzer,et al. Properties of atoms in molecules , 1971 .