46. ARB: A Software Environment for Sequence Data

[1]  Martin Hartmann,et al.  Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities , 2009, Applied and Environmental Microbiology.

[2]  Renzo Kottmann,et al.  A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes. , 2008, Systematic and applied microbiology.

[3]  W. Ludwig,et al.  SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.

[4]  Alexandros Stamatakis,et al.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..

[5]  Frank Oliver Glöckner,et al.  Graphical representation of ribosomal RNA probe accessibility data using ARB software package , 2005, BMC Bioinformatics.

[6]  K. Schleifer,et al.  ARB: a software environment for sequence data. , 2004, Nucleic acids research.

[7]  O. Gascuel,et al.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.

[8]  Chang-Shung Tung,et al.  All-atom homology model of the Escherichia coli 30S ribosomal subunit , 2002, Nature Structural Biology.

[9]  Martin Vingron,et al.  TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing , 2002, Bioinform..

[10]  Nan Yu,et al.  The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs , 2002, BMC Bioinformatics.

[11]  T. Steitz,et al.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. , 2000, Science.

[12]  K. Schleifer,et al.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.