Metagenomic analysis reveals the different characteristics of microbial communities inside and outside the karst tiankeng

[1]  Wei Shui,et al.  Characteristics of the Soil Microbial Communities in Different Slope Positions along an Inverted Stone Slope in a Degraded Karst Tiankeng , 2021, Biology.

[2]  G. Garland,et al.  Towards a multidimensional view of biodiversity and ecosystem functioning in a changing world. , 2020, The New phytologist.

[3]  J. Lv,et al.  Metagenomic analysis of microbial community and function reveals the response of soil respiration to the conversion of cropland to plantations in the Loess Plateau of China , 2020 .

[4]  Xiaoming Zhang,et al.  The challenge of soil loss control and vegetation restoration in the karst area of southwestern China , 2020, International Soil and Water Conservation Research.

[5]  Tong Bao,et al.  Metagenomic insights into seasonal variations in the soil microbial community and function in a Larix gmelinii forest of Mohe, China , 2020, Journal of Forestry Research.

[6]  Y. Yue,et al.  Karst landscapes of China: patterns, ecosystem processes and services , 2019, Landscape Ecology.

[7]  B. Badgley,et al.  Changes in microbial functional genes within the soil metagenome during forest ecosystem restoration , 2019, Soil Biology and Biochemistry.

[8]  Guangping Xu,et al.  Profiling the Bacterial Diversity in a Typical Karst Tiankeng of China , 2019, Biomolecules.

[9]  Timothy T. Barrows,et al.  Soil functions and ecosystem services research in the Chinese karst Critical Zone , 2019, Chemical Geology.

[10]  Degang Zhang,et al.  Changes in the soil microbial communities of alpine steppe at Qinghai-Tibetan Plateau under different degradation levels. , 2019, The Science of the total environment.

[11]  Z. Shangguan,et al.  Decreased occurrence of carbon cycle functions in microbial communities along with long-term secondary succession , 2018, Soil Biology and Biochemistry.

[12]  C. Peng,et al.  Contrasting Soil Bacterial Community, Diversity, and Function in Two Forests in China , 2018, Front. Microbiol..

[13]  T. Rattei,et al.  Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments , 2018, Environmental microbiology.

[14]  Xinhui Han,et al.  Differential responses of soil microbial biomass, diversity, and compositions to altitudinal gradients depend on plant and soil characteristics. , 2018, The Science of the total environment.

[15]  Qiming Tang,et al.  Karst tiankengs as refugia for indigenous tree flora amidst a degraded landscape in southwestern China , 2017, Scientific Reports.

[16]  Guangping Xu,et al.  Research Progress on Karst Tiankeng Ecosystems , 2017, The Botanical Review.

[17]  Hongmei Wang,et al.  The Relationship between pH and Bacterial Communities in a Single Karst Ecosystem and Its Implication for Soil Acidification , 2016, Front. Microbiol..

[18]  Folker Meyer,et al.  Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil , 2016, PloS one.

[19]  J. Gilbert,et al.  Spatial scale drives patterns in soil bacterial diversity. , 2016, Environmental microbiology.

[20]  Jizhong Zhou,et al.  Microbial regulation of the soil carbon cycle: evidence from gene–enzyme relationships , 2016, The ISME Journal.

[21]  M. Kanehisa,et al.  BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences. , 2016, Journal of molecular biology.

[22]  Lauren C. Cline,et al.  Soil microbial communities are shaped by plant-driven changes in resource availability during secondary succession. , 2015, Ecology.

[23]  F. Martin,et al.  Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites , 2015 .

[24]  Chengrong Chen,et al.  Vertical Distribution of Soil Denitrifying Communities in a Wet Sclerophyll Forest under Long-Term Repeated Burning , 2015, Microbial Ecology.

[25]  E. Delong,et al.  Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre , 2015, Front. Microbiol..

[26]  S. Hallam,et al.  Forest harvesting reduces the soil metagenomic potential for biomass decomposition , 2015, The ISME Journal.

[27]  Paul A. Sandifer,et al.  Exploring connections among nature, biodiversity, ecosystem services, and human health and well-being: Opportunities to enhance health and biodiversity conservation ☆ , 2015 .

[28]  Xiangui Lin,et al.  Profiling bacterial diversity in a limestone cave of the western Loess Plateau of China , 2015, Front. Microbiol..

[29]  Jarrett E. K. Byrnes,et al.  Marine biodiversity and ecosystem functioning: what’s known and what’s next? , 2015 .

[30]  Chao Xie,et al.  Fast and sensitive protein alignment using DIAMOND , 2014, Nature Methods.

[31]  Shui We.  Origination, study progress and prospect of karst tiankeng research in China , 2015 .

[32]  Lianwu Xie,et al.  Evaluation of soil fertility in the succession of karst rocky desertification using principal component analysis , 2014 .

[33]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[34]  N. Fierer,et al.  Temporal variability in soil microbial communities across land-use types , 2013, The ISME Journal.

[35]  N. Ravbar,et al.  Analysis of human induced changes in a karst landscape - the filling of dolines in the Kras plateau, Slovenia. , 2013, The Science of the total environment.

[36]  Siu-Ming Yiu,et al.  IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth , 2012, Bioinform..

[37]  C. Prescott,et al.  Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada , 2012 .

[38]  J. Mo,et al.  Effects of phosphorus addition on soil microbial biomass and community composition in three forest types in tropical China , 2012 .

[39]  D. Manning,et al.  Persistence of soil organic matter as an ecosystem property , 2011, Nature.

[40]  W. Whitman,et al.  Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties , 2011 .

[41]  Eoin L. Brodie,et al.  Soil Microbial Community Successional Patterns during Forest Ecosystem Restoration , 2011, Applied and Environmental Microbiology.

[42]  D. Wardle,et al.  How understanding aboveground-belowground linkages can assist restoration ecology. , 2010, Trends in ecology & evolution.

[43]  B. Muys,et al.  Plant distribution-altitude and landform relationships in karstic sinkholes of Mediterranean region of Turkey. , 2010, Journal of environmental biology.

[44]  Miriam L. Land,et al.  Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification , 2022 .

[45]  Jim A. Harris,et al.  Soil Microbial Communities and Restoration Ecology: Facilitators or Followers? , 2009, Science.

[46]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[47]  L. Krumholz,et al.  Abundance, composition, diversity and novelty of soil Proteobacteria , 2009, The ISME Journal.

[48]  W. Verstraete,et al.  Initial community evenness favours functionality under selective stress , 2009, Nature.

[49]  C. Körner,et al.  A test of the growth-limitation theory for alpine tree line formation in evergreen and deciduous taxa of the eastern Himalayas , 2008 .

[50]  Adam Godzik,et al.  Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..

[51]  Susumu Goto,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..

[52]  Supplemental Information 2: Kyoto Encyclopedia of genes and genomes. , 2022 .