TISSUES 2.0: an integrative web resource on mammalian tissue expression
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[1] A. Su,et al. Applications of a rat multiple tissue gene expression data set. , 2004, Genome research.
[2] Philip D. McMaster,et al. DO SPECIES LACKING A GALL BLADDER POSSESS ITS FUNCTIONAL EQUIVALENT? , 1922, The Journal of experimental medicine.
[3] S. Batalov,et al. A gene atlas of the mouse and human protein-encoding transcriptomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[4] Marc Robinson-Rechavi,et al. Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs , 2016, bioRxiv.
[5] J. Michael Cherry,et al. ENCODE data at the ENCODE portal , 2015, Nucleic Acids Res..
[6] Christian Stolte,et al. Comprehensive comparison of large-scale tissue expression datasets , 2015, bioRxiv.
[7] Damian Szklarczyk,et al. Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell‐lines , 2015, Proteomics.
[8] Syed Haider,et al. Ensembl BioMarts: a hub for data retrieval across taxonomic space , 2011, Database J. Biol. Databases Curation.
[9] L. Jensen,et al. The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text , 2013, PloS one.
[10] Janos X. Binder,et al. DISEASES: Text mining and data integration of disease–gene associations , 2014, bioRxiv.
[11] Gregory D. Schuler,et al. Database resources of the National Center for Biotechnology , 2003, Nucleic Acids Res..
[12] Peter H. Sudmant,et al. Meta-analysis of RNA-seq expression data across species, tissues and studies , 2015, Genome Biology.
[13] P. Khaitovich,et al. BMC Genomics BioMed Central Methodology article Estimating accuracy of RNA-Seq and microarrays with proteomics , 2022 .
[14] Igor Jurisica,et al. Integrated interactions database: tissue-specific view of the human and model organism interactomes , 2015, Nucleic Acids Res..
[15] Jun S. Liu,et al. The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans , 2015, Science.
[16] Fei Liu,et al. Tau in Alzheimer disease and related tauopathies. , 2010, Current Alzheimer research.
[17] Ben Lehner,et al. Tissue specificity and the human protein interaction network , 2009, Molecular systems biology.
[18] Antje Chang,et al. The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources , 2010, Nucleic Acids Res..
[19] Dmitri D. Pervouchine,et al. Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression , 2014, Nature Communications.
[20] Helen Parkinson,et al. Data Storage and Analysis in ArrayExpress and Expression Profiler , 2008, Current protocols in bioinformatics.
[21] Rajarshi Guha,et al. Pharos: Collating protein information to shed light on the druggable genome , 2016, Nucleic Acids Res..
[22] A. Bittner,et al. Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells , 2014, PloS one.
[23] Mirjam Luijten,et al. Transgenic animal models in toxicology: historical perspectives and future outlook. , 2011, Toxicological sciences : an official journal of the Society of Toxicology.
[24] Crispin J. Miller,et al. A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling , 2010, BMC Genomics.
[25] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[26] T. Mackay. Epistasis and quantitative traits: using model organisms to study gene–gene interactions , 2013, Nature Reviews Genetics.
[27] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[28] A. Su,et al. A gene expression atlas of the domestic pig , 2012, BMC Biology.
[29] Christian Stolte,et al. COMPARTMENTS: unification and visualization of protein subcellular localization evidence , 2014, Database J. Biol. Databases Curation.
[30] Mona Singh,et al. Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays , 2009, BMC Genomics.
[31] Philip Hunter,et al. The paradox of model organisms , 2008, EMBO reports.
[32] Damian Szklarczyk,et al. STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data , 2015, Nucleic Acids Res..
[33] Davide Heller,et al. STRING v10: protein–protein interaction networks, integrated over the tree of life , 2014, Nucleic Acids Res..
[34] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[35] Oliver Horlacher,et al. The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases , 2015, Nucleic Acids Res..
[36] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[37] Tyson A. Clark,et al. Discovery of tissue-specific exons using comprehensive human exon microarrays , 2007, Genome Biology.
[38] ENCODEConsortium,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[39] G. von Heijne,et al. Tissue-based map of the human proteome , 2015, Science.
[40] C. Burge,et al. Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues , 2012, Science.
[41] Davide Heller,et al. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences , 2015, Nucleic Acids Res..
[42] Daniel S. Himmelstein,et al. Understanding multicellular function and disease with human tissue-specific networks , 2015, Nature Genetics.
[43] E. Lundberg,et al. Towards a knowledge-based Human Protein Atlas , 2010, Nature Biotechnology.
[44] Sébastien Moretti,et al. Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species , 2008, DILS.
[45] Ugur Sahin,et al. RNA-Seq Atlas - a reference database for gene expression profiling in normal tissue by next-generation sequencing , 2012, Bioinform..
[46] M. Swindle,et al. Animal models of toxicology testing: the role of pigs , 2013, Expert opinion on drug metabolism & toxicology.
[47] A. Su,et al. Expression analysis of G Protein-Coupled Receptors in mouse macrophages , 2008, Immunome research.
[48] Thomas R. Gingeras,et al. Comparison of the transcriptional landscapes between human and mouse tissues , 2014, Proceedings of the National Academy of Sciences.
[49] Henrik Hornshøj,et al. Pairwise comparisons of ten porcine tissues identify differential transcriptional regulation at the gene, isoform, promoter and transcription start site level. , 2013, Biochemical and biophysical research communications.
[50] J. Nielsen,et al. Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics* , 2013, Molecular & Cellular Proteomics.
[51] María Martín,et al. Activities at the Universal Protein Resource (UniProt) , 2013, Nucleic Acids Res..
[52] Jon W. Huss,et al. BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources , 2009, Genome Biology.
[53] Peter Greaves,et al. First dose of potential new medicines to humans: how animals help , 2004, Nature Reviews Drug Discovery.
[54] C. Mason,et al. A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages , 2014, Nature Communications.
[55] Ross C Hardison. A guide to translation of research results from model organisms to human , 2016, Genome Biology.
[56] Jan Gorodkin,et al. Quality Assessment of Domesticated Animal Genome Assemblies , 2015, Bioinformatics and biology insights.
[57] Gary A. Churchill,et al. The future of model organisms in human disease research , 2011, Nature Reviews Genetics.