Biophysical Models of PAR Cluster Transport by Cortical Flow in C. elegans Early Embryogenesis
暂无分享,去创建一个
[1] D. Dickinson,et al. A particle size threshold governs diffusion and segregation of PAR-3 during cell polarization , 2021, bioRxiv.
[2] B. Thompson. Par‐3 family proteins in cell polarity & adhesion , 2021, The FEBS journal.
[3] Adriana T. Dawes,et al. CDC-42 Interactions with Par Proteins Are Critical for Proper Patterning in Polarization , 2020, Cells.
[4] Josana Rodriguez,et al. Going with the flow: insights from Caenorhabditis elegans zygote polarization , 2020, Philosophical Transactions of the Royal Society B.
[5] Jaime Fern'andez del R'io,et al. Array programming with NumPy , 2020, Nature.
[6] Erwin Frey,et al. Cytosolic flow induced symmetry breaking in a conceptual polarity model , 2020, 2005.09573.
[7] Mingjie Zhang,et al. Par complex cluster formation mediated by phase separation , 2020, Nature Communications.
[8] W. Holmes,et al. Simple Rho GTPase Dynamics Generate a Complex Regulatory Landscape Associated with Cell Shape. , 2020, Biophysical journal.
[9] Chao Du,et al. Statistical Methodology in Single-Molecule Experiments , 2020 .
[10] Erwin Frey,et al. Geometric cues stabilise long-axis polarisation of PAR protein patterns in C. elegans , 2020, Nature Communications.
[11] A. Cohen,et al. Do Cell Membranes Flow Like Honey or Jiggle Like Jello? , 2019, BioEssays : news and reviews in molecular, cellular and developmental biology.
[12] N. Goehring,et al. Patterning and polarization of cells by intracellular flows , 2019, Current opinion in cell biology.
[13] R. Golestanian,et al. Cooperatively enhanced reactivity and “stabilitaxis” of dissociating oligomeric proteins , 2019, Proceedings of the National Academy of Sciences.
[14] R. Erban,et al. Stochastic Modelling of Reaction–Diffusion Processes , 2019 .
[15] Madhav Mani,et al. A Jump-Distance-Based Parameter Inference Scheme for Particulate Trajectories. , 2019, Biophysical journal.
[16] Johannes L. Schönberger,et al. SciPy 1.0: fundamental algorithms for scientific computing in Python , 2019, Nature Methods.
[17] Daniel Coombs,et al. Diffusion analysis of single particle trajectories in a Bayesian nonparametrics framework , 2019, bioRxiv.
[18] Madhav Mani,et al. A Jump-Distance-Based Parameter Inference Scheme for Particulate Trajectories. , 2019, Biophysical journal.
[19] Lars Hubatsch,et al. A cell size threshold limits cell polarity and asymmetric division potential , 2019, Nature Physics.
[20] P. Bressloff,et al. Protein concentration gradients and switching diffusions. , 2019, Physical review. E.
[21] Patrycja Kowalek,et al. Classification of diffusion modes in single-particle tracking data: Feature-based versus deep-learning approach. , 2019, Physical review. E.
[22] F. Jülicher,et al. Guiding self-organized pattern formation in cell polarity establishment , 2018, Nature Physics.
[23] Erik E. Griffin,et al. Rapid diffusion-state switching underlies stable cytoplasmic gradients in the Caenorhabditis elegans zygote , 2018, Proceedings of the National Academy of Sciences.
[24] Adriana T. Dawes,et al. The importance of mechanical constraints for proper polarization and psuedo-cleavage furrow generation in the early Caenorhabditis elegans embryo , 2018, PLoS Comput. Biol..
[25] H. Stone,et al. Cell Membranes Resist Flow , 2018, Cell.
[26] Axel Voigt,et al. Non-invasive perturbations of intracellular flow reveal physical principles of cell organization , 2018, Nature Cell Biology.
[27] Erwin Frey,et al. Regulation of Pom cluster dynamics in Myxococcus xanthus , 2018, PLoS Comput. Biol..
[28] E. Munro,et al. The PAR proteins: from molecular circuits to dynamic self-stabilizing cell polarity , 2017, Development.
[29] T. Harris. Protein clustering for cell polarity: Par-3 as a paradigm , 2017, F1000Research.
[30] M. Gotta,et al. A Single-Cell Biochemistry Approach Reveals PAR Complex Dynamics during Cell Polarization. , 2017, Developmental cell.
[31] J. Ahringer,et al. aPKC Cycles between Functionally Distinct PAR Protein Assemblies to Drive Cell Polarity , 2017, Developmental cell.
[32] E. Munro. Protein Clustering Shapes Polarity Protein Gradients. , 2017, Developmental cell.
[33] Weimiao Yu,et al. Cortical forces and CDC-42 control clustering of PAR proteins for Caenorhabditis elegans embryonic polarization , 2017, Nature Cell Biology.
[34] Andre Levchenko,et al. A mathematical model coupling polarity signaling to cell adhesion explains diverse cell migration patterns , 2016, PLoS Comput. Biol..
[35] Leah Edelstein-Keshet,et al. Analysis of a minimal Rho-GTPase circuit regulating cell shape , 2016, Physical biology.
[36] Siu Kwan Lam,et al. Numba: a LLVM-based Python JIT compiler , 2015, LLVM '15.
[37] E. Munro,et al. Dynamic Opposition of Clustered Proteins Stabilizes Cortical Polarity in the C. elegans Zygote. , 2015, Developmental cell.
[38] Scott A. McKinley,et al. Maximum likelihood estimation for single particle, passive microrheology data with drift , 2015, 1509.03261.
[39] N. Goehring. PAR polarity: from complexity to design principles. , 2014, Experimental cell research.
[40] Adriana T. Dawes,et al. Actomyosin Regulation and Symmetry Breaking in a Model of Polarization in the Early Caenorhabditis elegans Embryo , 2014, Bulletin of Mathematical Biology.
[41] Paul C. Bressloff,et al. Stochastic Processes in Cell Biology , 2014, Interdisciplinary Applied Mathematics.
[42] William M. McFadden,et al. High-density single-molecule analysis of cell surface dynamics in C. elegans embryos , 2014, Nature Methods.
[43] Leah Edelstein-Keshet,et al. A model for intracellular actin waves explored by nonlinear local perturbation analysis. , 2013, Journal of theoretical biology.
[44] Adriana T. Dawes,et al. Cortical geometry may influence placement of interface between Par protein domains in early Caenorhabditis elegans embryos. , 2013, Journal of theoretical biology.
[45] J. Falke,et al. Lateral diffusion of peripheral membrane proteins on supported lipid bilayers is controlled by the additive frictional drags of (1) bound lipids and (2) protein domains penetrating into the bilayer hydrocarbon core. , 2013, Chemistry and physics of lipids.
[46] Feng Gao,et al. Structural insights into the intrinsic self-assembly of Par-3 N-terminal domain. , 2013, Structure.
[47] L Edelstein-Keshet,et al. Regimes of wave type patterning driven by refractory actin feedback: transition from static polarization to dynamic wave behaviour , 2012, Physical biology.
[48] Andre Levchenko,et al. Modelling Cell Polarization Driven by Synthetic Spatially Graded Rac Activation , 2012, PLoS Comput. Biol..
[49] Leah Edelstein-Keshet,et al. Synthetic spatially graded Rac activation drives cell polarization and movement , 2012, Proceedings of the National Academy of Sciences.
[50] T. Harris,et al. Assembly of Bazooka polarity landmarks through a multifaceted membrane-association mechanism , 2012, Journal of Cell Science.
[51] J. Hammer,et al. Actin retrograde flow and actomyosin II arc contraction drive receptor cluster dynamics at the immunological synapse in Jurkat T cells , 2012, Molecular biology of the cell.
[52] A. Hyman,et al. Polarization of PAR Proteins by Advective Triggering of a Pattern-Forming System , 2011, Science.
[53] Adriana T. Dawes,et al. PAR-3 oligomerization may provide an actin-independent mechanism to maintain distinct par protein domains in the early Caenorhabditis elegans embryo. , 2011, Biophysical journal.
[54] Alexandra Jilkine,et al. A Comparison of Mathematical Models for Polarization of Single Eukaryotic Cells in Response to Guided Cues , 2011, PLoS Comput. Biol..
[55] Michael G. Lerner,et al. Single molecule diffusion of membrane-bound proteins: window into lipid contacts and bilayer dynamics. , 2010, Biophysical journal.
[56] Alexandra Jilkine,et al. Wave-pinning and cell polarity from a bistable reaction-diffusion system. , 2008, Biophysical journal.
[57] M. Lemmon,et al. Membrane recognition by phospholipid-binding domains , 2008, Nature Reviews Molecular Cell Biology.
[58] I. Macara,et al. The PAR proteins: fundamental players in animal cell polarization. , 2007, Developmental cell.
[59] Brian E. Granger,et al. IPython: A System for Interactive Scientific Computing , 2007, Computing in Science & Engineering.
[60] John D. Hunter,et al. Matplotlib: A 2D Graphics Environment , 2007, Computing in Science & Engineering.
[61] Alexandra Jilkine,et al. Mathematical Model for Spatial Segregation of the Rho-Family GTPases Based on Inhibitory Crosstalk , 2007, Bulletin of mathematical biology.
[62] Alexandra Jilkine,et al. Polarization and Movement of Keratocytes: A Multiscale Modelling Approach , 2006, Bulletin of mathematical biology.
[63] R. S. Hodges,et al. Lateral mobility of proteins in liquid membranes revisited , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[64] J. Priess,et al. Cortical flows powered by asymmetrical contraction transport PAR proteins to establish and maintain anterior-posterior polarity in the early C. elegans embryo. , 2004, Developmental cell.
[65] G. Ermentrout,et al. Models for the length distributions of actin filaments: I. Simple polymerization and fragmentation , 1998, Bulletin of mathematical biology.
[66] M. Bayer,et al. Zones of membrane adhesion in the cryofixed envelope of Escherichia coli. , 1991, Journal of structural biology.
[67] Michael L. Waskom,et al. Seaborn: Statistical Data Visualization , 2021, J. Open Source Softw..
[68] Wes McKinney,et al. Data Structures for Statistical Computing in Python , 2010, SciPy.