Genome-wide identi cation and expression patterns analysis of the RPD3/HDA1 gene family in cotton
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[1] Peer Bork,et al. SMART: recent updates, new developments and status in 2020 , 2020, Nucleic Acids Res..
[2] Shuxun Yu,et al. High‐resolution temporal dynamic transcriptome landscape reveals a GhCAL‐mediated flowering regulatory pathway in cotton (Gossypium hirsutum L.) , 2020, Plant biotechnology journal.
[3] Shuxun Yu,et al. Genome-Wide Identification and Characterization of Glycosyltransferase Family 47 in Cotton , 2019, Front. Genet..
[4] Penghui Zhao,et al. Comprehensive analyses of ZFP gene family and characterization of expression profiles during plant hormone response in cotton , 2019, BMC Plant Biology.
[5] Simon C. Potter,et al. The EMBL-EBI search and sequence analysis tools APIs in 2019 , 2019, Nucleic Acids Res..
[6] Tianzhen Zhang,et al. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton , 2019, Nature Genetics.
[7] Hongkun Zheng,et al. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense , 2018, Nature Genetics.
[8] Silvio C. E. Tosatto,et al. The Pfam protein families database in 2019 , 2018, Nucleic Acids Res..
[9] K. M. Rai,et al. Role of GhHDA5 in H3K9 deacetylation and fiber initiation in Gossypium hirsutum , 2018, The Plant journal : for cell and molecular biology.
[10] Wei Fan,et al. Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits , 2018, Nature Genetics.
[11] Shouzhou Zhang,et al. Transcriptomic Analysis of Flower Bud Differentiation in Magnolia sinostellata , 2018, Genes.
[12] Chengjie Chen,et al. TBtools, a Toolkit for Biologists integrating various HTS-data handling tools with a user-friendly interface , 2018, bioRxiv.
[13] Sandui Guo,et al. CottonFGD: an integrated functional genomics database for cotton , 2017, BMC Plant Biology.
[14] Y. Hao,et al. Histone deacetylase HDA6 enhances brassinosteroid signaling by inhibiting the BIN2 kinase , 2016, Proceedings of the National Academy of Sciences.
[15] K. Hnatuszko-Konka,et al. Cis-regulatory elements used to control gene expression in plants , 2016, Plant Cell, Tissue and Organ Culture (PCTOC).
[16] F. Thibaud-Nissen,et al. Araport11: a complete reannotation of the Arabidopsis thaliana reference genome , 2016, bioRxiv.
[17] Sudhir Kumar,et al. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.
[18] Xuncheng Liu,et al. Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses. , 2016, Biochemical and biophysical research communications.
[19] C. P. Yang,et al. Characterization and expression analysis of histone deacetylases family RPD3/HDA1 in Populus trichocarpa , 2016, Biologia Plantarum.
[20] Keqiang Wu,et al. Regulation of flowering time by the histone deacetylase HDA5 in Arabidopsis. , 2015, The Plant journal : for cell and molecular biology.
[21] William Stafford Noble,et al. The MEME Suite , 2015, Nucleic Acids Res..
[22] Lei Fang,et al. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement , 2015, Nature Biotechnology.
[23] He Zhang,et al. Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution , 2015, Nature Biotechnology.
[24] Bo Hu,et al. GSDS 2.0: an upgraded gene feature visualization server , 2014, Bioinform..
[25] Yu Xue,et al. HemI: A Toolkit for Illustrating Heatmaps , 2014, PloS one.
[26] Zhi Wang,et al. The roles of histone acetylation in seed performance and plant development. , 2014, Plant physiology and biochemistry : PPB.
[27] Peer Bork,et al. SMART: recent updates, new developments and status in 2015 , 2014, Nucleic Acids Res..
[28] Xuncheng Liu,et al. Transcriptional repression by histone deacetylases in plants. , 2014, Molecular plant.
[29] Yingkao Hu,et al. Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies , 2014, BMC Plant Biology.
[30] Pasquale Termolino,et al. Histone Deacetylase AtHDA7 Is Required for Female Gametophyte and Embryo Development in Arabidopsis1[C][W][OPEN] , 2013, Plant Physiology.
[31] Cole Trapnell,et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.
[32] Daoxiu Zhou,et al. Arabidopsis histone deacetylase HDA9 regulates flowering time through repression of AGL19. , 2013, Biochemical and biophysical research communications.
[33] Chuanping Yang,et al. Histone deacetylases and their functions in plants , 2013, Plant Cell Reports.
[34] Xujun Ma,et al. Histone deacetylases and their functions in plants , 2013, Plant Cell Reports.
[35] D. E. Somers,et al. Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription , 2012, Proceedings of the National Academy of Sciences.
[36] Justin T. Page,et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres , 2012, Nature.
[37] J. Long,et al. APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19 , 2012, Development.
[38] Jeremy D. DeBarry,et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity , 2012, Nucleic acids research.
[39] David M. Goodstein,et al. Phytozome: a comparative platform for green plant genomics , 2011, Nucleic Acids Res..
[40] Robert D. Finn,et al. HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..
[41] Andrew J. Bannister,et al. Regulation of chromatin by histone modifications , 2011, Cell Research.
[42] Keqiang Wu,et al. Role of histone deacetylases HDA6 and HDA19 in ABA and abiotic stress response , 2010, Plant signaling & behavior.
[43] Keqiang Wu,et al. Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response , 2010, Journal of experimental botany.
[44] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[45] Yu Zhao,et al. Rice histone deacetylase genes display specific expression patterns and developmental functions. , 2009, Biochemical and biophysical research communications.
[46] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.
[47] Keqiang Wu,et al. Phylogenetic analysis, subcellular localization, and expression patterns of RPD3/HDA1 family histone deacetylases in plants , 2009, BMC Plant Biology.
[48] Zhongchi Liu,et al. Histone deacetylase genes in Arabidopsis development. , 2008, Journal of integrative plant biology.
[49] Keqiang Wu,et al. HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis. , 2008, Journal of experimental botany.
[50] Lili Tu,et al. Suitable internal control genes for qRT-PCR normalization in cotton fiber development and somatic embryogenesis , 2007 .
[51] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[52] E. Seto,et al. HATs and HDACs: from structure, function and regulation to novel strategies for therapy and prevention , 2007, Oncogene.
[53] Keqiang Wu,et al. Sequence and expression analysis of histone deacetylases in rice. , 2007, Biochemical and biophysical research communications.
[54] Z. Chen,et al. Roles of dynamic and reversible histone acetylation in plant development and polyploidy. , 2007, Biochimica et biophysica acta.
[55] Wilfred W. Li,et al. MEME: discovering and analyzing DNA and protein sequence motifs , 2006, Nucleic Acids Res..
[56] Keqiang Wu,et al. HISTONE DEACETYLASE19 Is Involved in Jasmonic Acid and Ethylene Signaling of Pathogen Response in Arabidopsis , 2005, The Plant Cell Online.
[57] Paul R. Ebert,et al. Antagonistic Interaction between Abscisic Acid and Jasmonate-Ethylene Signaling Pathways Modulates Defense Gene Expression and Disease Resistance in Arabidopsis , 2004, The Plant Cell Online.
[58] Steven B Cannon,et al. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana , 2004, BMC Plant Biology.
[59] Z. Chen,et al. Genetic control of developmental changes induced by disruption of Arabidopsis histone deacetylase 1 (AtHD1) expression. , 2003, Genetics.
[60] L. Hennig,et al. Chromatin-Remodeling and Memory Factors. New Regulators of Plant Development , 2002, Plant Physiology.
[61] L. Hurst. The Ka/Ks ratio: diagnosing the form of sequence evolution. , 2002, Trends in genetics : TIG.
[62] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[63] J. Turner,et al. The Arabidopsis Mutant cev1 Has Constitutively Active Jasmonate and Ethylene Signal Pathways and Enhanced Resistance to Pathogens , 2001, Plant Cell.
[64] Z. Chen,et al. Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[65] M. Lynch,et al. The evolutionary fate and consequences of duplicate genes. , 2000, Science.
[66] A. Bird,et al. Histone deacetylases: silencers for hire. , 2000, Trends in biochemical sciences.
[67] C. Allis,et al. The language of covalent histone modifications , 2000, Nature.
[68] M. Grunstein. Histone acetylation in chromatin structure and transcription , 1997, Nature.
[69] L. L. Ray,et al. Morphological Measures of Earliness of Crop Maturity in Cotton 1 , 1966 .
[70] W. Sung,et al. Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines , 2005 .
[71] Kathleen Marchal,et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences , 2002, Nucleic Acids Res..