A lamprey neural cell type atlas illuminates the origins of the vertebrate brain
暂无分享,去创建一个
H. Kaessmann | M. Rodicio | D. Arendt | J. Smith | M. Bronner | Thoomke Brüning | Katharina Mössinger | Megan L Martik | Stephen A. Green | A. Barreiro-Iglesias | D. Sobrido-Cameán | J. Stundl | D. Jandzik | G. Santos-Durán | Daniel M. Medeiros | F. Lamanna | Céline Schneider | Julia Schmidt | Francisca Hervas-Sotomayor | Jan Stundl | A. P. Oel | Mari Sepp | Florent Murat | Henrik Kaessmann
[1] Huanming Yang,et al. Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration , 2022, Science.
[2] Maximina H. Yun,et al. Cell type profiling in salamanders identifies innovations in vertebrate forebrain evolution , 2022, bioRxiv.
[3] S. Grillner. Evolution of the vertebrate motor system — from forebrain to spinal cord , 2021, Current Opinion in Neurobiology.
[4] S. Kuraku,et al. Genetic Mechanism for the Cyclostome Cerebellar Neurons Reveals Early Evolution of the Vertebrate Cerebellum , 2021, Frontiers in Cell and Developmental Biology.
[5] G. Striedter,et al. The Independent Evolution of Dorsal Pallia in Multiple Vertebrate Lineages , 2021, Brain, Behavior and Evolution.
[6] D. Arendt,et al. The dorsoanterior brain of adult amphioxus shares similarities in expression profile and neuronal composition with the vertebrate telencephalon , 2021, BMC biology.
[7] M. Coates,et al. Non-ammocoete larvae of Palaeozoic stem lampreys , 2021, Nature.
[8] R. Anadón,et al. Differential expression of somatostatin genes in the central nervous system of the sea lamprey , 2021, Brain Structure and Function.
[9] Shreyas M. Suryanarayana,et al. Olfaction in Lamprey Pallium Revisited-Dual Projections of Mitral and Tufted Cells. , 2021, Cell reports.
[10] Howard Y. Chang,et al. Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set , 2020, Science.
[11] James M. Otis,et al. Prepronociceptin-Expressing Neurons in the Extended Amygdala Encode and Promote Rapid Arousal Responses to Motivationally Salient Stimuli , 2020, Cell reports.
[12] Shreyas M. Suryanarayana,et al. The evolutionary origin of visual and somatosensory representation in the vertebrate pallium , 2020, Nature Ecology & Evolution.
[13] M. Elphick,et al. Cholecystokinin in the central nervous system of the sea lamprey Petromyzon marinus: precursor identification and neuroanatomical relationships with other neuronal signalling systems , 2019, Brain Structure and Function.
[14] Carlos González,et al. Heterochromatin protein 1α interacts with parallel RNA and DNA G-quadruplexes , 2019, Nucleic acids research.
[15] I. Amit,et al. Cross-Species Single-Cell Analysis Reveals Divergence of the Primate Microglia Program , 2019, Cell.
[16] S. Kelly,et al. OrthoFinder: phylogenetic orthology inference for comparative genomics , 2019, Genome Biology.
[17] Brian S. Clark,et al. Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development , 2019, bioRxiv.
[18] H. Kaessmann,et al. Galanin in an Agnathan: Precursor Identification and Localisation of Expression in the Brain of the Sea Lamprey Petromyzon marinus , 2019, Front. Neuroanat..
[19] C. W. Ragsdale,et al. Evolution of the Chordate Telencephalon , 2019, Current Biology.
[20] J. Matese,et al. Comprehensive single cell transcriptome lineages of a proto-vertebrate , 2019, Nature.
[21] Evan Z. Macosko,et al. Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity , 2019, Cell.
[22] Paul J. Hoffman,et al. Comprehensive Integration of Single-Cell Data , 2018, Cell.
[23] D. Arendt,et al. Evolution of neuronal types and families , 2019, Current Opinion in Neurobiology.
[24] G. Laurent,et al. Evolution of neuronal identity in the cerebral cortex , 2019, Current Opinion in Neurobiology.
[25] Allon M Klein,et al. Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data. , 2019, Cell systems.
[26] R. Satija,et al. Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression , 2019, Genome Biology.
[27] Arndt von Twickel,et al. Individual Dopaminergic Neurons of Lamprey SNc/VTA Project to Both the Striatum and Optic Tectum but Restrict Co-release of Glutamate to Striatum Only , 2019, Current Biology.
[28] C. W. Ragsdale,et al. Homology, neocortex, and the evolution of developmental mechanisms , 2018, Science.
[29] D. McCauley,et al. Gliogenesis in lampreys shares gene regulatory interactions with oligodendrocyte development in jawed vertebrates. , 2018, Developmental biology.
[30] Tracy M. Yamawaki,et al. Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles , 2018, Science.
[31] Lars E. Borm,et al. Molecular Architecture of the Mouse Nervous System , 2018, Cell.
[32] James A. Gagnon,et al. Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain , 2018, Nature Biotechnology.
[33] Koji Ando,et al. A molecular atlas of cell types and zonation in the brain vasculature , 2018, Nature.
[34] Sofia M. C. Robb,et al. The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution , 2017, Nature Genetics.
[35] Sten Grillner,et al. The Lamprey Pallium Provides a Blueprint of the Mammalian Layered Cortex , 2017, Current Biology.
[36] S. Grillner,et al. The blueprint of the vertebrate forebrain - With special reference to the habenulae. , 2017, Seminars in cell & developmental biology.
[37] R. Anadón,et al. Restricted co‐localization of glutamate and dopamine in neurons of the adult sea lamprey brain , 2017, Journal of anatomy.
[38] Sudhir Kumar,et al. TimeTree: A Resource for Timelines, Timetrees, and Divergence Times. , 2017, Molecular biology and evolution.
[39] S. Kelly,et al. STRIDE: Species Tree Root Inference from Gene Duplication Events , 2017, bioRxiv.
[40] Y. Murakami,et al. Reconstructing the ancestral vertebrate brain , 2017, Development, growth & differentiation.
[41] P. Bovolenta,et al. Molecular regionalization of the developing amphioxus neural tube challenges major partitions of the vertebrate brain , 2017, PLoS biology.
[42] Evgeny M. Zdobnov,et al. OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs , 2016, Nucleic Acids Res..
[43] Jeffrey R Moffitt,et al. High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing , 2016, Proceedings of the National Academy of Sciences.
[44] G. Wagner,et al. The origin and evolution of cell types , 2016, Nature Reviews Genetics.
[45] R. Kelsh,et al. Functional constraints on SoxE proteins in neural crest development: The importance of differential expression for evolution of protein activity. , 2016, Developmental biology.
[46] Bronwen L. Aken,et al. The spotted gar genome illuminates vertebrate evolution and facilitates human-to-teleost comparisons , 2016, Nature Genetics.
[47] S. Aota,et al. Evidence from cyclostomes for complex regionalization of the ancestral vertebrate brain , 2016, Nature.
[48] S. Grillner,et al. Ciliated neurons lining the central canal sense both fluid movement and pH through ASIC3 , 2016, Nature Communications.
[49] K. Lewis,et al. Prdm12 specifies V1 interneurons through cross-repressive interactions with Dbx1 and Nkx6 genes in Xenopus , 2015, Development.
[50] Evgeny M. Zdobnov,et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..
[51] David L. Bennett,et al. Transcriptional regulator PRDM12 is essential for human pain perception , 2015, Nature Genetics.
[52] Jian Wang,et al. NeuroPep: a comprehensive resource of neuropeptides , 2015, Database J. Biol. Databases Curation.
[53] T. Becker,et al. Neuronal regeneration from ependymo-radial glial cells: cook, little pot, cook! , 2015, Developmental cell.
[54] S. Salzberg,et al. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads , 2015, Nature Biotechnology.
[55] Shreyas M. Suryanarayana,et al. The Lamprey Pallium Provides a Blueprint of the Mammalian Motor Projections from Cortex , 2015, Current Biology.
[56] A. von Haeseler,et al. IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies , 2014, Molecular biology and evolution.
[57] Brian J. Raney,et al. Elephant shark genome provides unique insights into gnathostome evolution , 2014, Nature.
[58] J. Partanen,et al. The role of Tal2 and Tal1 in the differentiation of midbrain GABAergic neuron precursors , 2013, Biology Open.
[59] Carolina Wählby,et al. In situ sequencing for RNA analysis in preserved tissue and cells , 2013, Nature Methods.
[60] Anton J. Enright,et al. The zebrafish reference genome sequence and its relationship to the human genome , 2013, Nature.
[61] Eric S. Lander,et al. The African coelacanth genome provides insights into tetrapod evolution , 2013 .
[62] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[63] Johannes E. Schindelin,et al. Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.
[64] S. Grillner,et al. Evolutionary conservation of the habenular nuclei and their circuitry controlling the dopamine and 5-hydroxytryptophan (5-HT) systems , 2011, Proceedings of the National Academy of Sciences.
[65] Sean R. Eddy,et al. Accelerated Profile HMM Searches , 2011, PLoS Comput. Biol..
[66] S. Grillner,et al. Evolutionary Conservation of the Basal Ganglia as a Common Vertebrate Mechanism for Action Selection , 2011, Current Biology.
[67] L. Puelles,et al. Distal-less-like protein distribution in the larval lamprey forebrain , 2011, Neuroscience.
[68] M. Pombal,et al. Development and Organization of the Lamprey Telencephalon with Special Reference to the GABAergic System , 2011, Front. Neuroanat..
[69] R. Anadón,et al. New insights on the neuropeptide Y system in the larval lamprey brain: neuropeptide Y immunoreactive neurons, descending spinal projections and comparison with tyrosine hydroxylase and GABA immunoreactivities , 2010, Neuroscience.
[70] Russell B. Fletcher,et al. The Genome of the Western Clawed Frog Xenopus tropicalis , 2010, Science.
[71] Serban Nacu,et al. Fast and SNP-tolerant detection of complex variants and splicing in short reads , 2010, Bioinform..
[72] Ning Ma,et al. BLAST+: architecture and applications , 2009, BMC Bioinformatics.
[73] R. Anadón,et al. A monoclonal antibody as a tool to study the subcommissural organ and Reissner's fibre of the sea lamprey: An immunofluorescence study before and after a spinal cord transection , 2009, Neuroscience Letters.
[74] L. Puelles,et al. New and Old Thoughts on the Segmental Organization of the Forebrain in Lampreys , 2009, Brain, Behavior and Evolution.
[75] J. Partanen,et al. Gata2 is a tissue-specific post-mitotic selector gene for midbrain GABAergic neurons , 2009, Development.
[76] Ken Dewar,et al. Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations , 2008, Genome Biology.
[77] A. Fischer,et al. Transient expression of LIM‐domain transcription factors is coincident with delayed maturation of photoreceptors in the chicken retina , 2008, The Journal of comparative neurology.
[78] S. Rétaux,et al. Windows of the brain: towards a developmental biology of circumventricular and other neurohemal organs. , 2007, Seminars in cell & developmental biology.
[79] S. Rhodes,et al. Roles of the LHX3 and LHX4 LIM-homeodomain factors in pituitary development , 2007, Molecular and Cellular Endocrinology.
[80] Hidetoshi Shimodaira,et al. Pvclust: an R package for assessing the uncertainty in hierarchical clustering , 2006, Bioinform..
[81] Colin N. Dewey,et al. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution , 2004, Nature.
[82] Chris T. Amemiya,et al. Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey , 2004, Nature.
[83] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[84] S Grillner,et al. Reticulospinal neurones provide monosynaptic glycinergic inhibition of spinal neurones in lamprey , 1995, Neuroreport.
[85] Menek Goldstein,et al. Neurotensin‐like Peptides in the CNS of Lampreys: Chromatographic Characterization and Immunohistochemical Localization with Reference to Aminergic Markers , 1990, The European journal of neuroscience.
[86] T. Bullock,et al. Evolution of myelin sheaths: Both lamprey and hagfish lack myelin , 1984, Neuroscience Letters.
[87] C. Gans,et al. Neural Crest and the Origin of Vertebrates: A New Head , 1983, Science.
[88] J. Youson,et al. Morphology of the pineal complex of the anadromous sea lamprey, Petromyzon marinus L. , 1982, The American journal of anatomy.
[89] B. Deurs,et al. Brain barrier systems in the lamprey. II. Ultrastructure and permeability of the choroid plexus , 1982, Brain Research.
[90] T. Nakao. Electron microscopic studies on the lamprey meninges , 1979, The Journal of comparative neurology.
[91] C. Rovainen. Glucose Production by Lamprey Meninges , 1970, Science.
[92] G. Pertea,et al. GFF Utilities: GffRead and GffCompare. , 2020, F1000Research.
[93] R. Anadón,et al. Glutamatergic neuronal populations in the forebrain of the sea lamprey, Petromyzon marinus: An in situ hybridization and immunocytochemical study , 2011, The Journal of comparative neurology.
[94] J. Rubenstein,et al. Histogenetic compartments of the mouse centromedial and extended amygdala based on gene expression patterns during development , 2008, The Journal of comparative neurology.