Recent progress in developing fluorescent probes for imaging cell metabolites

Cellular metabolites play a crucial role in promoting and regulating cellular activities, but it has been difficult to monitor these cellular metabolites in living cells and in real time. Over the past decades, iterative development and improvements of fluorescent probes have been made, resulting in the effective monitoring of metabolites. In this review, we highlight recent progress in the use of fluorescent probes for tracking some key metabolites, such as adenosine triphosphate, cyclic adenosine monophosphate, cyclic guanosine 5'-monophosphate, Nicotinamide adenine dinucleotide (NADH), reactive oxygen species, sugar, carbon monoxide, and nitric oxide for both whole cell and subcellular imaging.

[1]  A. Nunes‐Nesi,et al.  In Vivo NADH/NAD+ Biosensing Reveals the Dynamics of Cytosolic Redox Metabolism in Plants. , 2020, The Plant cell.

[2]  A. Galaz,et al.  Imaging of the Lactate/Pyruvate Ratio Using a Genetically Encoded FRET Indicator. , 2020, Analytical chemistry.

[3]  Kecheng Zhang,et al.  Fluorescent carbon dots for in situ monitoring of lysosomal ATP levels. , 2020, Analytical chemistry.

[4]  Pan Jia,et al.  A highly specific Golgi-targetable fluorescent probe for tracking cysteine generation during the Golgi stress response , 2020 .

[5]  Caiyun Liu,et al.  A new phenylsulfonamide-based Golgi-targeting fluorescent probe for H2S and its bioimaging applications in living cells and zebrafish. , 2020, Chemical communications.

[6]  Wei Zhang,et al.  Versatile fluorescent probes for visualizing superoxide anion in living cells and in vivo. , 2020, Angewandte Chemie.

[7]  Kanyi Pu,et al.  Activatable Molecular Probes for Second Near-Infrared Fluorescence, Chemiluminescence, and Photoacoustic Imaging. , 2020, Angewandte Chemie.

[8]  Xiaobing Zhang,et al.  Engineering a Reversible Fluorescent Probe for Real-Time Live-Cell Imaging and Quantification of Mitochondrial ATP. , 2020, Analytical chemistry.

[9]  K. Wellen,et al.  Advances into understanding metabolites as signaling molecules in cancer progression. , 2020, Current opinion in cell biology.

[10]  Yi Chen Recent developments of fluorescent probes for detection and bioimaging of nitric oxide. , 2020, Nitric oxide : biology and chemistry.

[11]  Hongdong Duan,et al.  Recent progress on the organic and metal complex-based fluorescent probes for monitoring nitric oxide in living biological systems. , 2020, Organic & biomolecular chemistry.

[12]  T. Finkel,et al.  Metabolic Regulation of Cell Fate and Function. , 2020, Trends in cell biology.

[13]  Pan Jia,et al.  Rational design of a targetable fluorescent probe for visualizing H2S production under Golgi stress response elicited by monensin. , 2019, Analytical chemistry.

[14]  J. Diamond,et al.  Effects of fluorescent glutamate indicators on neurotransmitter diffusion and uptake , 2019, bioRxiv.

[15]  Kanyi Pu,et al.  Renal-Clearable Duplex Optical Reporter for Real-time Imaging of Contrast-induced Acute Kidney Injury. , 2019, Angewandte Chemie.

[16]  R. Pei,et al.  A photo-regulated aptamer sensor for spatiotemporally controlled monitoring of ATP in the mitochondria of living cells† , 2019, Chemical science.

[17]  C. Paradisi,et al.  Comment on "Water-Soluble Fluorescent Probe with Dual Mitochondria/Lysosome Targetability for Selective Superoxide Detection in Live Cells and in Zebrafish Embryos". , 2019, ACS sensors.

[18]  Weili Zhao,et al.  Response to Comment on "Water-Soluble Fluorescent Probe with Dual Mitochondria/Lysosome Targetability Superoxide Detection in Live Cells and in Zebrafish Embryos". , 2019, ACS sensors.

[19]  M. You,et al.  Genetically Encoded Ratiometric RNA-based Sensors for Quantitative Imaging of Small Molecules in Living Cells. , 2019, Angewandte Chemie.

[20]  D. Churchill,et al.  Imaging of Hypochlorous acid and Hypochlorite by Chemiluminescence and Application in Biological Systems. , 2019, Chemistry, an Asian journal.

[21]  Kanyi Pu,et al.  Unimolecular Chemo-fluoro-luminescent Reporter for Crosstalk-Free Duplex Imaging of Hepatotoxicity. , 2019, Journal of the American Chemical Society.

[22]  Jingchao Li,et al.  Molecular optical imaging probes for early diagnosis of drug-induced acute kidney injury , 2019, Nature Materials.

[23]  Wei Pan,et al.  Fluorescent probes for organelle-targeted bioactive species imaging , 2019, Chemical science.

[24]  T. Meade,et al.  Bimodal Fluorescence-Magnetic Resonance Contrast Agent for Apoptosis Imaging. , 2019, Journal of the American Chemical Society.

[25]  Jong Seung Kim,et al.  A ratiometric fluorescent probe for detecting hypochlorite in the endoplasmic reticulum. , 2019, Chemical communications.

[26]  Huaidong Jiang,et al.  Carbon-dot-supported atomically dispersed gold as a mitochondrial oxidative stress amplifier for cancer treatment , 2019, Nature Nanotechnology.

[27]  Juyoung Yoon,et al.  Rhodamine derivatives bearing thiourea groups serve as fluorescent probes for selective detection of ATP in mitochondria and lysosomes , 2019, Sensors and Actuators B: Chemical.

[28]  Q. Lei,et al.  Metabolite sensing and signaling in cell metabolism , 2018, Signal Transduction and Targeted Therapy.

[29]  Ping Li,et al.  Two-photon fluorescence imaging reveals a Golgi apparatus superoxide anion-mediated hepatic ischaemia-reperfusion signalling pathway , 2018, Chemical science.

[30]  Yongfei Li,et al.  Efficient Two-Photon Fluorescent Probe for Imaging of Nitric Oxide during Endoplasmic Reticulum Stress. , 2018, ACS sensors.

[31]  Shuangyan Huan,et al.  A cell membrane-anchored fluorescent probe for monitoring carbon monoxide release from living cells† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c8sc03584a , 2018, Chemical science.

[32]  Wolfgang F. Graier,et al.  Real-Time Imaging of Mitochondrial ATP Dynamics Reveals the Metabolic Setting of Single Cells , 2018, Cell reports.

[33]  Jian Wang,et al.  Mitochondria-targeting single-layered graphene quantum dots with dual recognition sites for ATP imaging in living cells. , 2018, Nanoscale.

[34]  A. Cavalié,et al.  AXER is an ATP/ADP exchanger in the membrane of the endoplasmic reticulum , 2018, Nature Communications.

[35]  Shaina L. Carroll,et al.  Challenges and Opportunities for Small-Molecule Fluorescent Probes in Redox Biology Applications. , 2018, Antioxidants & redox signaling.

[36]  J. Marvin,et al.  A genetically encoded single-wavelength sensor for imaging cytosolic and cell surface ATP , 2018, bioRxiv.

[37]  M. Raghunath,et al.  RGB-Color Intensiometric Indicators to Visualize Spatiotemporal Dynamics of ATP in Single Cells. , 2018, Angewandte Chemie.

[38]  Junyang Jung,et al.  A Ratiometric Two-Photon Fluorescent Probe for Tracking Lysosomal ATP: Direct In Cellulo Observation of Lysosomal Membrane Fusion Processes. , 2018, Angewandte Chemie.

[39]  J. Rabinowitz,et al.  Metabolomics and Isotope Tracing , 2018, Cell.

[40]  Chen Yang,et al.  A Novel “Off-On” Fluorescent Probe Based on Carbon Nitride Nanoribbons for the Detection of Citrate Anion and Live Cell Imaging , 2018, Sensors.

[41]  S. Sreedharan,et al.  Tracking HOCl concentrations across cellular organelles in real time using a super resolution microscopy probe. , 2018, Chemical communications.

[42]  C. Jaroniec,et al.  Targeted production of reactive oxygen species in mitochondria to overcome cancer drug resistance , 2018, Nature Communications.

[43]  Run Zhang,et al.  Bioanalytical methods for hypochlorous acid detection: recent advances and challenges , 2018 .

[44]  Youyu Zhang,et al.  A mitochondria-targeted colorimetric and ratiometric fluorescent probe for hydrogen peroxide with a large emission shift and bio-imaging in living cells , 2018 .

[45]  J. Loscalzo,et al.  NAD(H) and NADP(H) Redox Couples and Cellular Energy Metabolism. , 2018, Antioxidants & redox signaling.

[46]  Yi Lu,et al.  Upconversion Luminescence-Activated DNA Nanodevice for ATP Sensing in Living Cells. , 2018, Journal of the American Chemical Society.

[47]  Yong Li,et al.  Small-Molecule Fluorescent Probes for Imaging and Detection of Reactive Oxygen, Nitrogen, and Sulfur Species in Biological Systems. , 2018, Analytical chemistry.

[48]  David Fitzpatrick,et al.  Stability, affinity and chromatic variants of the glutamate sensor iGluSnFR , 2018, Nature Methods.

[49]  Weiying Lin,et al.  A turn-on endoplasmic reticulum-targeted two-photon fluorescent probe for hydrogen sulfide and bio-imaging applications in living cells, tissues, and zebrafish , 2017, Scientific Reports.

[50]  Xiaobing Zhang,et al.  Fluorescence Resonance Energy Transfer-Based DNA Nanoprism with a Split Aptamer for Adenosine Triphosphate Sensing in Living Cells. , 2017, Analytical chemistry.

[51]  S. Kelley,et al.  Delivery and Release of Small-Molecule Probes in Mitochondria Using Traceless Linkers. , 2017, Journal of the American Chemical Society.

[52]  Xiao‐Qi Yu,et al.  A tumor-specific and mitochondria-targeted fluorescent probe for real-time sensing of hypochlorite in living cells. , 2017, Chemical communications.

[53]  Ping Li,et al.  A new endoplasmic reticulum-targeted two-photon fluorescent probe for imaging of superoxide anion in diabetic mice. , 2017, Biosensors & bioelectronics.

[54]  Xiaohua Li,et al.  Observation of the Generation of ONOO- in Mitochondria under Various Stimuli with a Sensitive Fluorescence Probe. , 2017, Analytical chemistry.

[55]  Ping Yu,et al.  Mitochondria Targeted Nanoscale Zeolitic Imidazole Framework-90 for ATP Imaging in Live Cells. , 2017, Journal of the American Chemical Society.

[56]  Olga Rudenko,et al.  GPCR-Mediated Signaling of Metabolites. , 2017, Cell metabolism.

[57]  Yang Li,et al.  Investigation of endosome and lysosome biology by ultra pH‐sensitive nanoprobes☆ , 2017, Advanced drug delivery reviews.

[58]  Puja Ohri,et al.  A lysosome targetable fluorescent probe for endogenous imaging of hydrogen peroxide in living cells. , 2017, Chemical communications.

[59]  Elizabeth A. Specht,et al.  A Critical and Comparative Review of Fluorescent Tools for Live-Cell Imaging. , 2017, Annual review of physiology.

[60]  J. Fei,et al.  Real-Time Monitoring ATP in Mitochondrion of Living Cells: A Specific Fluorescent Probe for ATP by Dual Recognition Sites. , 2017, Analytical chemistry.

[61]  Bo Tang,et al.  High-Quantum-Yield Mitochondria-Targeting Near-Infrared Fluorescent Probe for Imaging Native Hypobromous Acid in Living Cells and in Vivo. , 2017, Analytical chemistry.

[62]  Wei Shu,et al.  Highly Specific and Ultrasensitive Two-Photon Fluorescence Imaging of Native HOCl in Lysosomes and Tissues Based on Thiocarbamate Derivatives. , 2016, Analytical chemistry.

[63]  Yue Yang,et al.  NAD(+) metabolism: Bioenergetics, signaling and manipulation for therapy. , 2016, Biochimica et biophysica acta.

[64]  Zhichao Dai,et al.  Development of a novel lysosome-targetable time-gated luminescence probe for ratiometric and luminescence lifetime detection of nitric oxide in vivo , 2016, Chemical science.

[65]  Q. Yao,et al.  A NIR fluorescent probe: imaging endogenous hydrogen peroxide during an autophagy process induced by rapamycin. , 2016, Journal of materials chemistry. B.

[66]  Yuzheng Zhao,et al.  Real-time and high-throughput analysis of mitochondrial metabolic states in living cells using genetically encoded NAD+/NADH sensors. , 2016, Free radical biology & medicine.

[67]  T. Hughes,et al.  Cilia have high cAMP levels that are inhibited by Sonic Hedgehog-regulated calcium dynamics , 2016, Proceedings of the National Academy of Sciences.

[68]  Young‐Tae Chang,et al.  Discerning the Chemistry in Individual Organelles with Small-Molecule Fluorescent Probes. , 2016, Angewandte Chemie.

[69]  W. Tan,et al.  An efficient two-photon fluorescent probe for monitoring mitochondrial singlet oxygen in tissues during photodynamic therapy. , 2016, Chemical communications.

[70]  Jianjun Du,et al.  Fluorescent Probes for Sensing and Imaging within Specific Cellular Organelles. , 2016, Accounts of chemical research.

[71]  Z. Geng,et al.  Lysosomal ATP imaging in living cells by a water-soluble cationic polythiophene derivative. , 2016, Biosensors & bioelectronics.

[72]  Xinjing Tang,et al.  Visualizing Hydrogen Sulfide in Mitochondria and Lysosome of Living Cells and in Tumors of Living Mice with Positively Charged Fluorescent Chemosensors. , 2016, Analytical chemistry.

[73]  Chunhui Huang,et al.  Evolution of Rhodamine B into Near‐Infrared Dye by Phototriggered Radical Reaction and Its Application for Lysosome‐Specific Live‐Cell Imaging , 2016 .

[74]  S. Kelley,et al.  Peptide-Mediated Delivery of Chemical Probes and Therapeutics to Mitochondria. , 2016, Accounts of chemical research.

[75]  Xu Wang,et al.  Rational Design of an α-Ketoamide-Based Near-Infrared Fluorescent Probe Specific for Hydrogen Peroxide in Living Systems. , 2016, Analytical chemistry.

[76]  Xiao-Feng Yang,et al.  A mitochondria-targetable near-infrared fluorescent probe for imaging nitroxyl (HNO) in living cells , 2016 .

[77]  Xing-Jie Liang,et al.  Future of nanotherapeutics: Targeting the cellular sub-organelles. , 2016, Biomaterials.

[78]  J. Loscalzo,et al.  In vivo monitoring of cellular energy metabolism using SoNar, a highly responsive sensor for NAD+/NADH redox state , 2016, Nature Protocols.

[79]  M. D. Luque de Castro,et al.  Present and foreseeable future of metabolomics in forensic analysis. , 2016, Analytica chimica acta.

[80]  Xiaoyu Li,et al.  Monitoring Nitric Oxide in Subcellular Compartments by Hybrid Probe Based on Rhodamine Spirolactam and SNAP-tag. , 2016, ACS chemical biology.

[81]  Weiying Lin,et al.  A fast responsive two-photon fluorescent probe for imaging H₂O₂ in lysosomes with a large turn-on fluorescence signal. , 2016, Biosensors & bioelectronics.

[82]  Changill Ban,et al.  Aptamer–nanoparticle complexes as powerful diagnostic and therapeutic tools , 2016, Experimental & Molecular Medicine.

[83]  Meiying Xu,et al.  A sensitive fluorescent sensor for the detection of endogenous hydroxyl radicals in living cells and bacteria and direct imaging with respect to its ecotoxicity in living zebra fish. , 2016, Chemical communications.

[84]  Caroline H. Johnson,et al.  Metabolomics: beyond biomarkers and towards mechanisms , 2016, Nature Reviews Molecular Cell Biology.

[85]  S. Chou,et al.  Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter , 2016, Scientific Reports.

[86]  Jia Huang,et al.  Genetically anchored fluorescent probes for subcellular specific imaging of hydrogen sulfide. , 2016, The Analyst.

[87]  Young‐Tae Chang,et al.  A Multisite-Binding Switchable Fluorescent Probe for Monitoring Mitochondrial ATP Level Fluctuation in Live Cells. , 2016, Angewandte Chemie.

[88]  Zheng Xu,et al.  Fluorescent probes for the selective detection of chemical species inside mitochondria. , 2016, Chemical communications.

[89]  W. Frommer,et al.  FRET sensor-based quantification of intracellular trehalose in mammalian cells , 2016, Bioscience, biotechnology, and biochemistry.

[90]  T. Hughes,et al.  New DAG and cAMP Sensors Optimized for Live-Cell Assays in Automated Laboratories , 2015, Journal of biomolecular screening.

[91]  Mako Kamiya,et al.  Development of a Sensitive Bioluminogenic Probe for Imaging Highly Reactive Oxygen Species in Living Rats. , 2015, Angewandte Chemie.

[92]  Danke Xu,et al.  Aptamer/Polydopamine Nanospheres Nanocomplex for in Situ Molecular Sensing in Living Cells. , 2015, Analytical chemistry.

[93]  D. Buccella,et al.  Visualizing changes in mitochondrial Mg2+ during apoptosis with organelle-targeted triazole-based ratiometric fluorescent sensors† †Electronic supplementary information (ESI) available: Experimental details, metal selectivity plots, determination of apparent dissociation constants, fluorescence micr , 2015, Chemical science.

[94]  Stefan W. Hell,et al.  SiR–Hoechst is a far-red DNA stain for live-cell nanoscopy , 2015, Nature Communications.

[95]  Chunhui Huang,et al.  Mitochondria-Directed Fluorescent Probe for the Detection of Hydrogen Peroxide near Mitochondrial DNA. , 2015, Analytical chemistry.

[96]  Juyoung Yoon,et al.  Recent Progress in Fluorescent Imaging Probes , 2015, Sensors.

[97]  Martin D de Jonge,et al.  Imaging metals in biology: balancing sensitivity, selectivity and spatial resolution. , 2015, Chemical Society reviews.

[98]  Xinjing Tang,et al.  Visualizing fluoride ion in mitochondria and lysosome of living cells and in living mice with positively charged ratiometric probes. , 2015, Analytical chemistry.

[99]  A. Fornace,et al.  Global Metabolomic Identification of Long-Term Dose-Dependent Urinary Biomarkers in Nonhuman Primates Exposed to Ionizing Radiation , 2015, Radiation research.

[100]  Yi Xiao,et al.  Monitoring lipid peroxidation within foam cells by lysosome-targetable and ratiometric probe. , 2015, Analytical chemistry.

[101]  A. Misra,et al.  Highly sensitive cell imaging "Off-On" fluorescent probe for mitochondria and ATP. , 2015, Biosensors & bioelectronics.

[102]  J. Auwerx,et al.  NAD(+) Metabolism and the Control of Energy Homeostasis: A Balancing Act between Mitochondria and the Nucleus. , 2015, Cell metabolism.

[103]  X. Jing,et al.  Delivering a photosensitive transplatin prodrug to overcome cisplatin drug resistance. , 2015, Chemical communications.

[104]  E. A. Waters,et al.  Multimeric Near IR–MR Contrast Agent for Multimodal In Vivo Imaging , 2015, Journal of the American Chemical Society.

[105]  Xinghui Gao,et al.  HOCl can appear in the mitochondria of macrophages during bacterial infection as revealed by a sensitive mitochondrial-targeting fluorescent probe† †Electronic supplementary information (ESI) available: Experimental section and supporting figures. See DOI: 10.1039/c5sc01562f Click here for additiona , 2015, Chemical science.

[106]  Mingyang Lu,et al.  Fluorescent Probe HKSOX-1 for Imaging and Detection of Endogenous Superoxide in Live Cells and In Vivo. , 2015, Journal of the American Chemical Society.

[107]  Chen Chen,et al.  RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messenger Cyclic di-AMP. , 2015, Journal of the American Chemical Society.

[108]  C. Yang,et al.  A Controllable Aptamer-Based Self-Assembled DNA Dendrimer for High Affinity Targeting, Bioimaging and Drug Delivery , 2015, Scientific Reports.

[109]  F. Cheng,et al.  SoNar, a Highly Responsive NAD+/NADH Sensor, Allows High-Throughput Metabolic Screening of Anti-tumor Agents. , 2015, Cell metabolism.

[110]  Young‐Tae Chang,et al.  Development of targetable two-photon fluorescent probes to image hypochlorous Acid in mitochondria and lysosome in live cell and inflamed mouse model. , 2015, Journal of the American Chemical Society.

[111]  Yuzheng Zhao,et al.  Organelle-Specific Nitric Oxide Detection in Living Cells via HaloTag Protein Labeling , 2015, PloS one.

[112]  Wenwan Zhong,et al.  A mitochondrion targeting fluorescent probe for imaging of intracellular superoxide radicals. , 2015, Chemical communications.

[113]  Igor L. Medintz,et al.  Peptides for specifically targeting nanoparticles to cellular organelles: quo vadis? , 2015, Accounts of chemical research.

[114]  Yan-hong Liu,et al.  A ratiometric fluorescent probe for in situ quantification of basal mitochondrial hypochlorite in cancer cells. , 2015, Chemical communications.

[115]  Xiaoqing Xiong,et al.  Ratiometric fluorescence imaging of cellular polarity: decrease in mitochondrial polarity in cancer cells. , 2015, Angewandte Chemie.

[116]  Jin Zhao,et al.  A colorimetric and ratiometric fluorescent probe for ClO- targeting in mitochondria and its application in vivo. , 2015, Journal of materials chemistry. B.

[117]  M. Merkx,et al.  Genetically-encoded FRET-based sensors for monitoring Zn(2+) in living cells. , 2015, Metallomics : integrated biometal science.

[118]  Lingxin Chen,et al.  Visualization of nitroxyl (HNO) in vivo via a lysosome-targetable near-infrared fluorescent probe. , 2014, Chemical communications.

[119]  Grigori Enikolopov,et al.  Red fluorescent genetically encoded indicator for intracellular hydrogen peroxide , 2014, Nature Communications.

[120]  Hiroyuki Noji,et al.  Diversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging , 2014, Scientific Reports.

[121]  Suming Chen,et al.  Lysosomal pH rise during heat shock monitored by a lysosome-targeting near-infrared ratiometric fluorescent probe. , 2014, Angewandte Chemie.

[122]  T. Yi,et al.  A highly sensitive ratiometric fluorescent probe for the detection of cytoplasmic and nuclear hydrogen peroxide. , 2014, Analytical chemistry.

[123]  Lei Wang,et al.  Optical aptasensors for quantitative detection of small biomolecules: a review. , 2014, Biosensors & bioelectronics.

[124]  T. Tachikawa,et al.  Far-red fluorescence probe for monitoring singlet oxygen during photodynamic therapy. , 2014, Journal of the American Chemical Society.

[125]  Yi Lu,et al.  Functional DNA nanomaterials for sensing and imaging in living cells. , 2014, Current opinion in biotechnology.

[126]  S. Okumoto,et al.  Glutamine flux imaging using genetically encoded sensors. , 2014, Journal of visualized experiments : JoVE.

[127]  Yuehe Lin,et al.  In situ simultaneous monitoring of ATP and GTP using a graphene oxide nanosheet–based sensing platform in living cells , 2014, Nature Protocols.

[128]  Xiao‐Qi Yu,et al.  Mitochondria-targeted colorimetric and fluorescent probes for hypochlorite and their applications for in vivo imaging. , 2014, Chemical communications.

[129]  Jishan Li,et al.  Dual-stimuli responsive i-motif/nanoflares for sensing ATP in lysosomes. , 2014, The Analyst.

[130]  Young Ho Suh,et al.  Red emissive two-photon probe for real-time imaging of mitochondria trafficking. , 2014, Analytical chemistry.

[131]  Keiko Kuwata,et al.  Hoechst tagging: a modular strategy to design synthetic fluorescent probes for live-cell nucleus imaging. , 2014, Chemical communications.

[132]  Tong Wu,et al.  A selenium-contained aggregation-induced "turn-on" fluorescent probe for hydrogen peroxide. , 2014, Organic & biomolecular chemistry.

[133]  M. Akram Citric Acid Cycle and Role of its Intermediates in Metabolism , 2014, Cell Biochemistry and Biophysics.

[134]  G. Enikolopov,et al.  Genetically encoded fluorescent indicator for imaging NAD(+)/NADH ratio changes in different cellular compartments. , 2014, Biochimica et biophysica acta.

[135]  S. Hallström,et al.  ATP increases within the lumen of the endoplasmic reticulum upon intracellular Ca2+ release , 2014, Molecular biology of the cell.

[136]  Juyoung Yoon,et al.  Recent progress in the development of near-infrared fluorescent probes for bioimaging applications. , 2014, Chemical Society reviews.

[137]  G. Cosa,et al.  Fluorogenic α-tocopherol analogue for monitoring the antioxidant status within the inner mitochondrial membrane of live cells. , 2013, Journal of the American Chemical Society.

[138]  G. Yellen,et al.  Imaging energy status in live cells with a fluorescent biosensor of the intracellular ATP-to-ADP ratio , 2013, Nature Communications.

[139]  Ping Li,et al.  Mitochondria-targeted reaction-based two-photon fluorescent probe for imaging of superoxide anion in live cells and in vivo. , 2013, Analytical chemistry.

[140]  B. Ye,et al.  Quantitative monitoring of 2-oxoglutarate in Escherichia coli cells by a fluorescence resonance energy transfer-based biosensor , 2013, Applied Microbiology and Biotechnology.

[141]  Chulhun Kang,et al.  A self-calibrating bipartite viscosity sensor for mitochondria. , 2013, Journal of the American Chemical Society.

[142]  W. Kaelin,et al.  Influence of Metabolism on Epigenetics and Disease , 2013, Cell.

[143]  C. A. Kellenberger,et al.  RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP. , 2013, Journal of the American Chemical Society.

[144]  Alejandro San Martín,et al.  A Genetically Encoded FRET Lactate Sensor and Its Use To Detect the Warburg Effect in Single Cancer Cells , 2013, PloS one.

[145]  Takuya Terai,et al.  Small-molecule fluorophores and fluorescent probes for bioimaging , 2013, Pflügers Archiv - European Journal of Physiology.

[146]  Kaibo Zheng,et al.  Lighting up carbon monoxide: fluorescent probes for monitoring CO in living cells. , 2013, Angewandte Chemie.

[147]  F. Saudou,et al.  Vesicular Glycolysis Provides On-Board Energy for Fast Axonal Transport , 2013, Cell.

[148]  Mark T. Harnett,et al.  An optimized fluorescent probe for visualizing glutamate neurotransmission , 2013, Nature Methods.

[149]  Ben Zhong Tang,et al.  A photostable AIE luminogen for specific mitochondrial imaging and tracking. , 2013, Journal of the American Chemical Society.

[150]  Christopher J Chang,et al.  Reaction-based small-molecule fluorescent probes for chemoselective bioimaging. , 2012, Nature chemistry.

[151]  Hannah V. McCue,et al.  Generation and characterization of a lysosomally targeted, genetically encoded Ca2+-sensor , 2012, The Biochemical journal.

[152]  Yi Xiao,et al.  A lysosome-targetable and two-photon fluorescent probe for monitoring endogenous and exogenous nitric oxide in living cells. , 2012, Journal of the American Chemical Society.

[153]  B. Zhao,et al.  A selective fluorescent probe for carbon monoxide imaging in living cells. , 2012, Angewandte Chemie.

[154]  D. Attwell,et al.  Synaptic Energy Use and Supply , 2012, Neuron.

[155]  S. Okumoto,et al.  Visualization of Glutamine Transporter Activities in Living Cells Using Genetically Encoded Glutamine Sensors , 2012, PloS one.

[156]  P. Ray,et al.  Reactive oxygen species (ROS) homeostasis and redox regulation in cellular signaling. , 2012, Cellular signalling.

[157]  R. Deberardinis,et al.  Cellular Metabolism and Disease: What Do Metabolic Outliers Teach Us? , 2012, Cell.

[158]  Wenjiao Song,et al.  Fluorescence Imaging of Cellular Metabolites with RNA , 2012, Science.

[159]  I. Gryczynski,et al.  Imaging exocytosis of ATP-containing vesicles with TIRF microscopy in lung epithelial A549 cells , 2012, Purinergic Signalling.

[160]  Y. Urano,et al.  A reversible near-infrared fluorescence probe for reactive oxygen species based on Te-rhodamine. , 2012, Chemical communications.

[161]  Caibin Sheng,et al.  NAD+ metabolism and NAD(+)-dependent enzymes: promising therapeutic targets for neurological diseases. , 2012, Current drug targets.

[162]  Xi-jun Wang,et al.  Modern analytical techniques in metabolomics analysis. , 2012, The Analyst.

[163]  Nicola Zamboni,et al.  Engineering Genetically Encoded Nanosensors for Real-Time In Vivo Measurements of Citrate Concentrations , 2011, PloS one.

[164]  J. Albeck,et al.  Imaging cytosolic NADH-NAD(+) redox state with a genetically encoded fluorescent biosensor. , 2011, Cell metabolism.

[165]  Christopher J. Chang,et al.  A nuclear-localized fluorescent hydrogen peroxide probe for monitoring sirtuin-mediated oxidative stress responses in vivo. , 2011, Chemistry & biology.

[166]  Shoji Takeuchi,et al.  Long-term in vivo glucose monitoring using fluorescent hydrogel fibers , 2011, Proceedings of the National Academy of Sciences.

[167]  T. Finkel,et al.  Signal transduction by reactive oxygen species , 2011, The Journal of cell biology.

[168]  P. Li,et al.  A near-IR reversible fluorescent probe modulated by selenium for monitoring peroxynitrite and imaging in living cells. , 2011, Journal of the American Chemical Society.

[169]  Y. Urano,et al.  Development of a highly sensitive fluorescence probe for hydrogen peroxide. , 2011, Journal of the American Chemical Society.

[170]  V. Gladyshev,et al.  Hydrogen Peroxide Probes Directed to Different Cellular Compartments , 2011, PloS one.

[171]  V. C. Özalp,et al.  An Aptamer‐Based Nanobiosensor for Real‐Time Measurements of ATP Dynamics , 2010, Chembiochem : a European journal of chemical biology.

[172]  Peng R. Chen,et al.  A highly selective fluorescent probe for visualization of organic hydroperoxides in living cells. , 2010, Journal of the American Chemical Society.

[173]  Zasha Weinberg,et al.  An Allosteric Self-Splicing Ribozyme Triggered by a Bacterial Second Messenger , 2010, Science.

[174]  Benjamin P Bowen,et al.  Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging. , 2010, BioTechniques.

[175]  R. Zenobi,et al.  Analytical techniques for single-cell metabolomics: state of the art and trends , 2010, Analytical and bioanalytical chemistry.

[176]  Tak Yee Aw,et al.  Reactive oxygen species, cellular redox systems, and apoptosis. , 2010, Free radical biology & medicine.

[177]  Christopher J Chang,et al.  Organelle-targetable fluorescent probes for imaging hydrogen peroxide in living cells via SNAP-Tag protein labeling. , 2010, Journal of the American Chemical Society.

[178]  K. Oka,et al.  Blue Fluorescent cGMP Sensor for Multiparameter Fluorescence Imaging , 2010, PloS one.

[179]  P. Antich,et al.  Initiation of Purinergic Signaling by Exocytosis of ATP-containing Vesicles in Liver Epithelium* , 2010, The Journal of Biological Chemistry.

[180]  K. Ota,et al.  Circular permutation of ligand‐binding module improves dynamic range of genetically encoded FRET‐based nanosensor , 2009, Protein science : a publication of the Protein Society.

[181]  Kwang Soo Kim,et al.  Unique sandwich stacking of pyrene-adenine-pyrene for selective and ratiometric fluorescent sensing of ATP at physiological pH. , 2009, Journal of the American Chemical Society.

[182]  Michael W. Davidson,et al.  The fluorescent protein palette: tools for cellular imaging. , 2009, Chemical Society reviews.

[183]  Takeharu Nagai,et al.  Visualization of ATP levels inside single living cells with fluorescence resonance energy transfer-based genetically encoded indicators , 2009, Proceedings of the National Academy of Sciences.

[184]  Chad A Mirkin,et al.  Aptamer nano-flares for molecular detection in living cells. , 2009, Nano letters.

[185]  Roger Y Tsien,et al.  Constructing and exploiting the fluorescent protein paintbox (Nobel Lecture). , 2009, Angewandte Chemie.

[186]  Jim Berg,et al.  A genetically encoded fluorescent reporter of ATP/ADP ratio , 2008, Nature Methods.

[187]  Takuya Terai,et al.  Fluorescent probes for bioimaging applications. , 2008, Current opinion in chemical biology.

[188]  M. Mattson,et al.  Superoxide Flashes in Single Mitochondria , 2008, Cell.

[189]  R. Breaker,et al.  Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP , 2008, Science.

[190]  B. Dickinson,et al.  A targetable fluorescent probe for imaging hydrogen peroxide in the mitochondria of living cells. , 2008, Journal of the American Chemical Society.

[191]  Emily H Turner,et al.  Chemical cytometry: fluorescence-based single-cell analysis. , 2008, Annual review of analytical chemistry.

[192]  S. Kelley,et al.  Mitochondria-penetrating peptides. , 2008, Chemistry & biology.

[193]  R. Tsien,et al.  Optical measurement of synaptic glutamate spillover and reuptake by linker optimized glutamate-sensitive fluorescent reporters , 2008, Proceedings of the National Academy of Sciences.

[194]  Robert M. Clegg,et al.  Engineering Redox-Sensitive Linkers for Genetically Encoded FRET-Based Biosensors , 2008, Experimental biology and medicine.

[195]  W. Ying NAD+/NADH and NADP+/NADPH in cellular functions and cell death: regulation and biological consequences. , 2008, Antioxidants & redox signaling.

[196]  Evan W. Miller,et al.  Fluorescent probes for nitric oxide and hydrogen peroxide in cell signaling. , 2007, Current opinion in chemical biology.

[197]  A. Friebe,et al.  Design of fluorescence resonance energy transfer (FRET)-based cGMP indicators: a systematic approach. , 2007, The Biochemical journal.

[198]  M. Iino,et al.  Optical glutamate sensor for spatiotemporal analysis of synaptic transmission , 2007, The European journal of neuroscience.

[199]  A. Beynon,et al.  Hair Bundles Are Specialized for ATP Delivery via Creatine Kinase , 2007, Neuron.

[200]  M. Zaccolo,et al.  Cell entry and cAMP imaging of anthrax edema toxin , 2006, The EMBO journal.

[201]  Yoshio Umezawa,et al.  Cell-based indicator to visualize picomolar dynamics of nitric oxide release from living cells. , 2006, Analytical chemistry.

[202]  M. Beal,et al.  Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases , 2006, Nature.

[203]  Loren L Looger,et al.  Conversion of a Putative Agrobacterium Sugar-binding Protein into a FRET Sensor with High Selectivity for Sucrose* , 2006, Journal of Biological Chemistry.

[204]  J. Sweedler,et al.  A multichannel native fluorescence detection system for capillary electrophoretic analysis of neurotransmitters in single neurons , 2006, Analytical and bioanalytical chemistry.

[205]  S. Lukyanov,et al.  Genetically encoded fluorescent indicator for intracellular hydrogen peroxide , 2006, Nature Methods.

[206]  Warren C. Ruder,et al.  Termination of cAMP signals by Ca2+ and G(alpha)i via extracellular Ca2+ sensors: a link to intracellular Ca2+ oscillations. , 2005, The Journal of cell biology.

[207]  Marcus Fehr,et al.  Construction and optimization of a family of genetically encoded metabolite sensors by semirational protein engineering , 2005, Protein science : a publication of the Protein Society.

[208]  M. Zaccolo,et al.  Protein kinase A gating of a pseudopodial-located RhoA/ROCK/p38/NHE1 signal module regulates invasion in breast cancer cell lines. , 2005, Molecular biology of the cell.

[209]  L. Looger,et al.  Detection of glutamate release from neurons by genetically encoded surface-displayed FRET nanosensors. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[210]  Yasuteru Urano,et al.  Highly sensitive near-infrared fluorescent probes for nitric oxide and their application to isolated organs. , 2005, Journal of the American Chemical Society.

[211]  T. Imato,et al.  Design and development of a fluorescent probe for monitoring hydrogen peroxide using photoinduced electron transfer. , 2005, Bioorganic & medicinal chemistry.

[212]  R. Tsien Building and breeding molecules to spy on cells and tumors , 2005, FEBS letters.

[213]  Xiaodong Cheng,et al.  Fluorescent indicators of cAMP and Epac activation reveal differential dynamics of cAMP signaling within discrete subcellular compartments. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[214]  R. Tsien,et al.  Imaging Dynamic Redox Changes in Mammalian Cells with Green Fluorescent Protein Indicators* , 2004, Journal of Biological Chemistry.

[215]  Shoko Yoshida,et al.  Fluorescent probes for hydrogen peroxide based on a non-oxidative mechanism. , 2004, Angewandte Chemie.

[216]  Devin Oglesbee,et al.  Investigating Mitochondrial Redox Potential with Redox-sensitive Green Fluorescent Protein Indicators* , 2004, Journal of Biological Chemistry.

[217]  Yasuteru Urano,et al.  Highly sensitive fluorescence probes for nitric oxide based on boron dipyrromethene chromophore-rational design of potentially useful bioimaging fluorescence probe. , 2004, Journal of the American Chemical Society.

[218]  F. Ashcroft,et al.  ATP-dependent interaction of the cytosolic domains of the inwardly rectifying K+ channel Kir6.2 revealed by fluorescence resonance energy transfer , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[219]  W. Martin,et al.  Evolutionary biology: Essence of mitochondria , 2003, Nature.

[220]  W. Frommer,et al.  Development of a fluorescent nanosensor for ribose , 2003, FEBS letters.

[221]  Marcus Fehr,et al.  In Vivo Imaging of the Dynamics of Glucose Uptake in the Cytosol of COS-7 Cells by Fluorescent Nanosensors* , 2003, Journal of Biological Chemistry.

[222]  J. Morot-Gaudry,et al.  Cellular and subcellular localisation of glutamine synthetase and glutamate dehydrogenase in grapes gives new insights on the regulation of carbon and nitrogen metabolism , 2002, Planta.

[223]  Marcus Fehr,et al.  Visualization of maltose uptake in living yeast cells by fluorescent nanosensors , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[224]  Tullio Pozzan,et al.  Discrete Microdomains with High Concentration of cAMP in Stimulated Rat Neonatal Cardiac Myocytes , 2002, Science.

[225]  G Burnstock,et al.  Evidence That Release of Adenosine Triphosphate From Endothelial Cells During Increased Shear Stress Is Vesicular , 2001, Journal of cardiovascular pharmacology.

[226]  A. Plaitakis,et al.  Regulation of human glutamate dehydrogenases: Implications for glutamate, ammonia and energy metabolism in brain , 2001, Journal of neuroscience research.

[227]  J. Winther,et al.  Shedding light on disulfide bond formation: engineering a redox switch in green fluorescent protein , 2001, The EMBO journal.

[228]  R. Tsien,et al.  Reducing the Environmental Sensitivity of Yellow Fluorescent Protein , 2001, The Journal of Biological Chemistry.

[229]  Roger Y. Tsien,et al.  Spatiotemporal dynamics of guanosine 3′,5′-cyclic monophosphate revealed by a genetically encoded, fluorescent indicator , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[230]  Y. Umezawa,et al.  Fluorescent indicators for cyclic GMP based on cyclic GMP-dependent protein kinase Ialpha and green fluorescent proteins. , 2000, Analytical chemistry.

[231]  N. Holbrook,et al.  Oxidants, oxidative stress and the biology of ageing , 2000, Nature.

[232]  J. Schultz,et al.  A fluorescence affinity hollow fiber sensor for continuous transdermal glucose monitoring. , 2000, Analytical chemistry.

[233]  G. An,et al.  Quantification of carotenoids in cells of Phaffia rhodozyma by autofluorescence , 2000, Biotechnology Letters.

[234]  G. Patterson,et al.  Separation of the glucose-stimulated cytoplasmic and mitochondrial NAD(P)H responses in pancreatic islet beta cells. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[235]  Kojima,et al.  Fluorescent Indicators for Imaging Nitric Oxide Production. , 1999, Angewandte Chemie.

[236]  F. Christofi,et al.  FlCRhR/cyclic AMP signaling in myenteric ganglia and calbindin-D28 intrinsic primary afferent neurons involves adenylyl cyclases I, III and IV , 1999, Brain Research.

[237]  S. Kawahara,et al.  Detection and imaging of nitric oxide with novel fluorescent indicators: diaminofluoresceins. , 1998, Analytical chemistry.

[238]  M. Duchen,et al.  The relationship between mitochondrial state, ATP hydrolysis, [Mg2+]i and [Ca2+]i studied in isolated rat cardiomyocytes. , 1996, The Journal of physiology.

[239]  E R Kandel,et al.  Spatially resolved dynamics of cAMP and protein kinase A subunits in Aplysia sensory neurons. , 1993, Science.

[240]  P J Sammak,et al.  Intracellular cyclic AMP not calcium, determines the direction of vesicle movement in melanophores: direct measurement by fluorescence ratio imaging , 1992, The Journal of cell biology.

[241]  Susan S. Taylor,et al.  Fluorescence ratio imaging of cyclic AMP in single cells , 1991, Nature.

[242]  M L Walsh,et al.  Localization of mitochondria in living cells with rhodamine 123. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[243]  Z. Cai,et al.  Mass spectrometry-based metabolomics: Targeting the crosstalk between gut microbiota and brain in neurodegenerative disorders. , 2019, Mass spectrometry reviews.

[244]  K. Ohno,et al.  Maternal administration of meclozine for the treatment of foramen magnum stenosis in transgenic mice with achondroplasia. , 2017, Journal of neurosurgery. Pediatrics.

[245]  A. Emwas,et al.  The strengths and weaknesses of NMR spectroscopy and mass spectrometry with particular focus on metabolomics research. , 2015, Methods in molecular biology.

[246]  Y. Hung,et al.  Live-cell imaging of cytosolic NADH-NAD+ redox state using a genetically encoded fluorescent biosensor. , 2014, Methods in molecular biology.

[247]  S. Peng,et al.  Glutamate receptors and signal transduction in learning and memory , 2010, Molecular Biology Reports.

[248]  Sharon M. Cawley,et al.  Cygnets: in vivo characterization of novel cGMP indicators and in vivo imaging of intracellular cGMP. , 2005, Methods in molecular biology.

[249]  Stepan Gambaryan,et al.  Fluorescent sensors for rapid monitoring of intracellular cGMP , 2005, Nature Methods.

[250]  K. Mikoshiba,et al.  A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications , 2002, Nature Biotechnology.

[251]  Susan S. Taylor,et al.  A genetically encoded, fluorescent indicator for cyclic AMP in living cells , 1999, Nature Cell Biology.

[252]  L. B. Chen,et al.  Mitochondrial membrane potential in living cells. , 1988, Annual review of cell biology.

[253]  E. M. Irvin,et al.  The interaction of quinacrine with adenine nucleotides. , 1954, The Journal of biological chemistry.