Choice between phylogram and chronogram can have a dramatic impact on the location of phylogenetic diversity hotspots
暂无分享,去创建一个
Meg J. Elliott | Nunzio Knerr | Alexander N. Schmidt-Lebuhn | N. Knerr | M. J. Elliott | A. Schmidt-Lebuhn
[1] K. Kay,et al. A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects , 2006, BMC Evolutionary Biology.
[2] J. Welch,et al. Correlates of substitution rate variation in mammalian protein-coding sequences , 2008, BMC Evolutionary Biology.
[3] Anders Larsson,et al. AliView: a fast and lightweight alignment viewer and editor for large datasets , 2014, Bioinform..
[4] M. Sanderson. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. , 2002, Molecular biology and evolution.
[5] Susanne A. Fritz,et al. A guide to phylogenetic metrics for conservation, community ecology and macroecology , 2016, Biological reviews of the Cambridge Philosophical Society.
[6] A. Schmidt‐Lebuhn,et al. Phylogenetic relationships of the Australasian shrubby everlastings Ozothamnus and Cassinia (Asteraceae: Asteroideae: Gnaphalieae) , 2013, Cladistics : the international journal of the Willi Hennig Society.
[7] S. Lavergne,et al. Climatic and topographical correlates of plant palaeo- and neoendemism in a Mediterranean biodiversity hotspot , 2017, Annals of botany.
[8] T. Davies,et al. Revisiting the impacts of non-random extinction on the tree-of-life , 2013, Biology Letters.
[9] Bastian Steudel,et al. Contrasting biodiversity-ecosystem functioning relationships in phylogenetic and functional diversity. , 2016, The New phytologist.
[10] Nunzio Knerr,et al. Phylogenetic diversity and endemism of Australian daisies (Asteraceae) , 2015 .
[11] Hotspots of diversity of wild Australian soybean relatives and their conservation in situ , 2012, Conservation Genetics.
[12] Shawn W. Laffan,et al. Biodiverse, a tool for the spatial analysis of biological and related diversity , 2010 .
[13] Where the rare species are , 2009, Molecular ecology.
[14] Rob Knight,et al. The Cladistic Basis for the Phylogenetic Diversity (PD) Measure Links Evolutionary Features to Environmental Gradients and Supports Broad Applications of Microbial Ecology’s “Phylogenetic Beta Diversity” Framework , 2009, International journal of molecular sciences.
[15] J. Diniz‐Filho,et al. Understanding global patterns of mammalian functional and phylogenetic diversity , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.
[16] Ramón Doallo,et al. CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics , 2012, Nature Methods.
[17] B. Mishler,et al. Continental‐scale spatial phylogenetics of Australian angiosperms provides insights into ecology, evolution and conservation , 2016 .
[18] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[19] Mozes P. K. Blom,et al. Phylogeography, hotspots and conservation priorities: an example from the Top End of Australia , 2016 .
[20] S. Ho,et al. Relaxed Phylogenetics and Dating with Confidence , 2006, PLoS biology.
[21] R. Lanfear,et al. Taller plants have lower rates of molecular evolution , 2013, Nature Communications.
[22] M. Donoghue,et al. Hemisphere-scale differences in conifer evolutionary dynamics , 2012, Proceedings of the National Academy of Sciences.
[23] Jian Zhang,et al. Gains and losses of plant species and phylogenetic diversity for a northern high‐latitude region , 2015 .
[24] A. Mooers,et al. Evolutionary Distinctiveness, Threat Status, and Ecological Oddity in Primates , 2010, Conservation biology : the journal of the Society for Conservation Biology.
[25] Keping Ma,et al. Identifying hotspots of endemic woody seed plant diversity in China , 2012 .
[26] Jarrett E. K. Byrnes,et al. A global synthesis reveals biodiversity loss as a major driver of ecosystem change , 2012, Nature.
[27] Daniel P Faith,et al. Phylodiversity to inform conservation policy: An Australian example. , 2015, The Science of the total environment.
[28] N. Isaac,et al. Mammals on the EDGE: Conservation Priorities Based on Threat and Phylogeny , 2007, PloS one.
[29] J. Joy,et al. Imperilled phylogenetic endemism of Malagasy lemuriformes , 2013 .
[30] Helmut Hillebrand,et al. On the Generality of the Latitudinal Diversity Gradient , 2004, The American Naturalist.
[31] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[32] W. Jetz,et al. Phylogenetic endemism in terrestrial mammals , 2015 .
[33] William A. Freyman,et al. Spatial phylogenetics of the vascular flora of Chile. , 2017, Molecular phylogenetics and evolution.
[34] Shawn W. Laffan,et al. A biogeographical regionalization of Australian Acacia species , 2013 .
[35] K. Hilu,et al. Land plant evolutionary timeline: gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates. , 2013, American journal of botany.
[36] K. Ma,et al. Diversity hotspots and conservation gaps for the Chinese endemic seed flora , 2016 .
[37] B. Mishler,et al. Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia , 2014, Nature Communications.
[38] Laura J. Pollock,et al. Phylogenetic approaches reveal biodiversity threats under climate change , 2016 .
[39] Campbell O. Webb,et al. Bioinformatics Applications Note Phylocom: Software for the Analysis of Phylogenetic Community Structure and Trait Evolution , 2022 .
[40] Priority setting by sites and by species using rarity, richness and phylogenetic diversity: the case of neotropical glassfrogs (Anura: Centrolenidae) , 2014, Biodiversity and Conservation.
[41] Wilfried Thuiller,et al. Spatial mismatch and congruence between taxonomic, phylogenetic and functional diversity: the need for integrative conservation strategies in a changing world. , 2010, Ecology letters.
[42] D. Greber,et al. Phylogeny of Australian Gnaphalieae (Asteraceae) Based on Chloroplast and Nuclear Sequences, the trnL Intron, trnL/trnF Intergenic Spacer, matK, and ETS , 2009 .
[43] E. Biffin,et al. Identifying Centres of Plant Biodiversity in South Australia , 2016, PloS one.
[44] Laura J. Pollock,et al. Phylogenetic diversity meets conservation policy: small areas are key to preserving eucalypt lineages , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.
[45] P. Unmack,et al. Assessing biodiversity and endemism using phylogenetic methods across multiple taxonomic groups , 2015, Ecology and evolution.
[46] Richard Grenyer,et al. Preserving the evolutionary potential of floras in biodiversity hotspots , 2007, Nature.
[47] R. A. Pyron,et al. Phylogenetic diversity, habitat loss and conservation in South American pitvipers (Crotalinae: Bothrops and Bothrocophias) , 2014 .
[48] Stephen A. Smith,et al. Evolutionary history of the angiosperm flora of China , 2018, Nature.
[49] Andrew P. Martin,et al. Body size, metabolic rate, generation time, and the molecular clock. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[50] S. Trewick,et al. Fire and slice: palaeogeography for biogeography at New Zealand's North Island/South Island juncture , 2012 .
[51] A. Vogler,et al. Endemism and evolutionary history in conflict over Madagascar's freshwater conservation priorities , 2011 .
[52] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[53] Korbinian Strimmer,et al. APE: Analyses of Phylogenetics and Evolution in R language , 2004, Bioinform..
[54] William A. Freyman,et al. Spatial phylogenetics of the native California flora , 2017, BMC Biology.
[55] D. Rosauer,et al. Phylogenetic endemism: a new approach for identifying geographical concentrations of evolutionary history , 2009, Molecular ecology.
[56] P. Ehrlich,et al. Global mammal distributions, biodiversity hotspots, and conservation , 2006, Proceedings of the National Academy of Sciences.
[57] D. Faith. Conservation evaluation and phylogenetic diversity , 1992 .
[58] G. Daily,et al. Biodiversity loss and its impact on humanity , 2012, Nature.
[59] Wilfried Thuiller,et al. Consequences of climate change on the tree of life in Europe , 2011, Nature.
[60] M. Brändle,et al. Patterns of freshwater biodiversity in Europe: lessons from the spring snail genus Bythinella , 2011 .
[61] B. Mishler,et al. Continental scale patterns and predictors of fern richness and phylogenetic diversity , 2015, Front. Genet..
[62] James H. Brown,et al. The rate of DNA evolution: effects of body size and temperature on the molecular clock. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[63] S. Laffan,et al. Spatial distribution of species richness and endemism of the genus Acacia in Australia , 2011 .
[64] H. Schneider,et al. Ferns diversified in the shadow of angiosperms , 2004, Nature.
[65] Dong Xie,et al. BEAST 2: A Software Platform for Bayesian Evolutionary Analysis , 2014, PLoS Comput. Biol..
[66] M. Cadotte,et al. Rarest of the rare: advances in combining evolutionary distinctiveness and scarcity to inform conservation at biogeographical scales , 2010 .
[67] M. McGlone,et al. Phylogenetic measures of neo- and palaeo-endemism in the indigenous vascular flora of the New Zealand archipelago , 2017, Australian Systematic Botany.
[68] C. E. González‐Orozco,et al. Distorted perception of the spatial distribution of plant diversity through uneven collecting efforts: the example of Asteraceae in Australia , 2012 .
[69] Michael J. Sanderson,et al. A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy , 1997 .
[70] C. Graham,et al. Phylogenetic scale in ecology and evolution , 2016, bioRxiv.
[71] T. Davies,et al. Spatial incongruence among hotspots and complementary areas of tree diversity in southern Africa , 2015 .
[72] C. van den Berg,et al. Spatial analyses of the phylogenetic diversity of Minaria (Apocynaceae): assessing priority areas for conservation in the Espinhaço Range, Brazil , 2012 .