CHESS (CgHExpreSS): A comprehensive analysis tool for the analysis of genomic alterations and their effects on the expression profile of the genome

[1]  Calum MacAulay,et al.  SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes , 2008, BMC Bioinformatics.

[2]  Tae-Min Kim,et al.  GEAR: genomic enrichment analysis of regional DNA copy number changes , 2008, Bioinform..

[3]  Joaquín Dopazo,et al.  ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling , 2007, Nucleic Acids Res..

[4]  Nicolas Stransky,et al.  VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles , 2006, Bioinform..

[5]  Jeroen Beliën,et al.  ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data , 2006, Bioinform..

[6]  Emmanuel Barillot,et al.  CAPweb: a bioinformatics CGH array Analysis Platform , 2006, Nucleic Acids Res..

[7]  P. Nederlof,et al.  Array-CGH and breast cancer , 2006, Breast Cancer Research.

[8]  Eytan Domany,et al.  Relationship of gene expression and chromosomal abnormalities in colorectal cancer. , 2006, Cancer research.

[9]  Raj Chari,et al.  Recent advances in array comparative genomic hybridization technologies and their applications in human genetics , 2006, European Journal of Human Genetics.

[10]  R. Lothe,et al.  The order of genetic events associated with colorectal cancer progression inferred from meta‐analysis of copy number changes , 2006, Genes, chromosomes & cancer.

[11]  N. Nowak,et al.  aCGHViewer: A Generic Visualization Tool For aCGH data , 2006, Cancer informatics.

[12]  Åsa Hedman,et al.  SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data , 2005, Nucleic acids research.

[13]  M. Wigler,et al.  Circular binary segmentation for the analysis of array-based DNA copy number data. , 2004, Biostatistics.

[14]  Ajay N. Jain,et al.  Hidden Markov models approach to the analysis of array CGH data , 2004 .

[15]  M. Ringnér,et al.  Impact of DNA amplification on gene expression patterns in breast cancer. , 2002, Cancer research.