Uridine as a potentiator of aminoglycosides through activation of carbohydrate transporters

Aminoglycosides (AGs) are broad-spectrum antibiotics effective against Gram-negative bacteria. AG uptake depends on membrane potential, but the precise mechanisms are incompletely understood. We report here a new mechanism of active AG uptake in Gram-negative bacteria. In E. coli, overexpression of various carbohydrate transporters increases susceptibility to AGs. Conversely, deletion of a single transporter has little impact. We propose a new uptake model where AGs act as substrates for redundant carbohydrate transporters. This mechanism appears to be shared among Gram-negative ESKAPE pathogens. We screened for molecules that induce transporters’ expression and identified uridine. When uridine is co-administered with AGs under conditions mimicking urinary tract infections, the efficacy of AG therapies is significantly improved against E. coli, including resistant strains, due to enhanced bacterial uptake. Based on previous knowledge on the use of uridine in humans, we propose that uridine can be a potentiating adjuvant to AG treatment of infectious diseases in the hospital.

[1]  E. Krin,et al.  Identification of the active mechanism of aminoglycoside entry in V. cholerae through characterization of sRNA ctrR, regulating carbohydrate utilization and transport , 2023, bioRxiv.

[2]  V. de Crécy-Lagard,et al.  Queuosine modification of tRNA-Tyrosine elicits translational reprogramming and enhances growth of Vibrio cholerae with aminoglycosides , 2022, bioRxiv.

[3]  E. Krin,et al.  Nonessential tRNA and rRNA modifications impact the bacterial response to sub-MIC antibiotic stress , 2022, bioRxiv.

[4]  G. Robinson,et al.  Proton motive force underpins respiration-mediated potentiation of aminoglycoside lethality in pathogenic Escherichia coli , 2022, Archives of Microbiology.

[5]  Alan D. Lopez,et al.  Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis , 2022, The Lancet.

[6]  M. Shin,et al.  DksA Modulates Antimicrobial Susceptibility of Acinetobacter baumannii , 2021, Antibiotics.

[7]  E. Krin,et al.  Interplay between Sublethal Aminoglycosides and Quorum Sensing: Consequences on Survival in V. cholerae , 2021, Cells.

[8]  P. Bouloc,et al.  A Small Regulatory RNA Generated from the malK 5′ Untranslated Region Targets Gluconeogenesis in Vibrio Species , 2021, mSphere.

[9]  E. Krin,et al.  Sleeping ribosomes: Bacterial signaling triggers RaiA mediated persistence to aminoglycosides , 2020, bioRxiv.

[10]  Marco Piñón,et al.  I Overview , 2020, The Diaries and Letters of Lord Woolton 1940-1945.

[11]  K. Allison,et al.  Potentiating aminoglycoside antibiotics to reduce their toxic side effects , 2020, PloS one.

[12]  M. Winterhalter,et al.  Kanamycin uptake into Escherichia coli is facilitated by OmpF and OmpC porin channels located in the outer membrane. , 2020, ACS infectious diseases.

[13]  D. Fourmy,et al.  Fluorescent aminoglycoside antibiotics and methods for accurately monitoring uptake by bacteria. , 2020, ACS infectious diseases.

[14]  İ. Kurultak,et al.  A New Artificial Urine Protocol to Better Imitate Human Urine , 2019, Scientific Reports.

[15]  S. van Calenbergh,et al.  Host metabolites stimulate the bacterial proton motive force to enhance the activity of aminoglycoside antibiotics , 2019, PLoS pathogens.

[16]  G. Péhau-Arnaudet,et al.  A peptide of a type I toxin−antitoxin system induces Helicobacter pylori morphological transformation from spiral shape to coccoids , 2019, Proceedings of the National Academy of Sciences.

[17]  K. Mertens,et al.  Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis , 2019, The Lancet. Infectious diseases.

[18]  K. Krause,et al.  Aminoglycoside Revival: Review of a Historically Important Class of Antimicrobials Undergoing Rejuvenation. , 2018, EcoSal Plus.

[19]  Sherie J Smith,et al.  Inhaled anti-pseudomonal antibiotics for long-term therapy in cystic fibrosis. , 2018, The Cochrane database of systematic reviews.

[20]  P. Plésiat,et al.  Mutations in Gene fusA1 as a Novel Mechanism of Aminoglycoside Resistance in Clinical Strains of Pseudomonas aeruginosa , 2017, Antimicrobial Agents and Chemotherapy.

[21]  Dorival Martins,et al.  Stimulating Central Carbon Metabolism to Re-sensitize Pseudomonas aeruginosa to Aminoglycosides. , 2017, Cell chemical biology.

[22]  Samuel I. Miller Antibiotic Resistance and Regulation of the Gram-Negative Bacterial Outer Membrane Barrier by Host Innate Immune Molecules , 2016, mBio.

[23]  K. Krause,et al.  Aminoglycosides: An Overview. , 2016, Cold Spring Harbor perspectives in medicine.

[24]  Y. Seok,et al.  HPr antagonizes the anti-σ70 activity of Rsd in Escherichia coli , 2013, Proceedings of the National Academy of Sciences.

[25]  Juhyun Kim,et al.  The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes , 2012, Nucleic Acids Res..

[26]  N. Fujita,et al.  Novel Roles of cAMP Receptor Protein (CRP) in Regulation of Transport and Metabolism of Carbon Sources , 2011, PloS one.

[27]  James J. Collins,et al.  Metabolite-Enabled Eradication of Bacterial Persisters by Aminoglycosides , 2011, Nature.

[28]  M. Reed Optimal Antibiotic Dosing , 2010 .

[29]  Z. Baharoglu,et al.  Conjugative DNA Transfer Induces the Bacterial SOS Response and Promotes Antibiotic Resistance Development through Integron Activation , 2010, PLoS genetics.

[30]  E. Sonnleitner,et al.  Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa , 2009, Proceedings of the National Academy of Sciences.

[31]  J. Blázquez,et al.  The Glycerol-3-Phosphate Permease GlpT Is the Only Fosfomycin Transporter in Pseudomonas aeruginosa , 2009, Journal of bacteriology.

[32]  Ling-Hui Li,et al.  Genome Sequencing and Comparative Analysis of Klebsiella pneumoniae NTUH-K2044, a Strain Causing Liver Abscess and Meningitis , 2009, Journal of bacteriology.

[33]  B. Görke,et al.  Carbon catabolite repression in bacteria: many ways to make the most out of nutrients , 2008, Nature Reviews Microbiology.

[34]  A. Clatworthy,et al.  Targeting virulence: a new paradigm for antimicrobial therapy , 2007, Nature Chemical Biology.

[35]  D. Andersson,et al.  Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19. , 2007, Journal of molecular biology.

[36]  M. P. Gallagher,et al.  The nucleoside transport proteins, NupC and NupG, from Escherichia coli: specific structural motifs necessary for the binding of ligands. , 2005, Organic & biomolecular chemistry.

[37]  Reinhold Brückner,et al.  Carbon catabolite repression in bacteria: choice of the carbon source and autoregulatory limitation of sugar utilization. , 2002, FEMS microbiology letters.

[38]  E. Schneider ABC transporters catalyzing carbohydrate uptake. , 2001, Research in microbiology.

[39]  M. Reed Optimal antibiotic dosing. The pharmacokinetic-pharmacodynamic interface. , 2000, Postgraduate medicine.

[40]  E. Bibi,et al.  MdfA, an Escherichia coli multidrug resistance protein with an extraordinarily broad spectrum of drug recognition , 1997, Journal of bacteriology.

[41]  S. Piscitelli,et al.  Development of Resistance During Antimicrobial Therapy: A Review of Antibiotic Classes and Patient Characteristics in 173 Studies , 1995, Pharmacotherapy.

[42]  K. Timmis,et al.  The organization of the Pm promoter of the TOL plasmid reflects the structure of its cognate activator protein XylS , 1994, Molecular and General Genetics MGG.

[43]  G. Sprenger,et al.  Two open reading frames adjacent to the Escherichia coli K-12 transketolase (tkt) gene show high similarity to the mannitol phosphotransferase system enzymes from Escherichia coli and various gram-positive bacteria. , 1993, Biochimica et biophysica acta.

[44]  M. Vaara,et al.  Agents that increase the permeability of the outer membrane. , 1992, Microbiological reviews.

[45]  T. Dougherty,et al.  Tobramycin uptake in Escherichia coli is driven by either electrical potential or ATP , 1991, Journal of bacteriology.

[46]  H. Nikaido,et al.  Protein D2 channel of the Pseudomonas aeruginosa outer membrane has a binding site for basic amino acids and peptides. , 1990, The Journal of biological chemistry.

[47]  P. van de Heyning,et al.  Aminoglycoside-induced ototoxicity. , 1990, Toxicology letters.

[48]  J. Sugiyama,et al.  Deletion mutants of the Escherichia coli K-12 mannitol permease: dissection of transport-phosphorylation, phospho-exchange, and mannitol-binding activities , 1989, Journal of bacteriology.

[49]  P. Miller,et al.  Bacterial uptake of aminoglycoside antibiotics. , 1987, Microbiological reviews.

[50]  B. D. Davis,et al.  Misread protein creates membrane channels: an essential step in the bactericidal action of aminoglycosides. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[51]  T. Beveridge,et al.  Gentamicin interaction with Pseudomonas aeruginosa cell envelope , 1986, Antimicrobial Agents and Chemotherapy.

[52]  G. Peters,et al.  Phase I and pharmacokinetic studies of high-dose uridine intended for rescue from 5-fluorouracil toxicity. , 1984, Cancer research.

[53]  B. Wallace,et al.  Effect of growth rate on streptomycin accumulation by Escherichia coli and Bacillus megaterium. , 1984, Journal of general microbiology.

[54]  R. Hancock Aminoglycoside uptake and mode of action--with special reference to streptomycin and gentamicin. I. Antagonists and mutants. , 1981, The Journal of antimicrobial chemotherapy.

[55]  Michael H. Miller,et al.  Gentamicin Uptake in Wild-Type and Aminoglycoside-Resistant Small-Colony Mutants of Staphylococcus aureus , 1980, Antimicrobial Agents and Chemotherapy.

[56]  S. Thorbjarnardóttir,et al.  Mutations determining generalized resistance to aminoglycoside antibiotics in Escherichia coli , 1978, Molecular and General Genetics MGG.

[57]  M. Wood,et al.  Comparison of urinary excretion of tobramycin and gentamicin in adults. , 1976, The Journal of infectious diseases.

[58]  L. Bryan,et al.  Streptomycin Accumulation in Susceptible and Resistant Strains of Escherichia coli and Pseudomonas aeruginosa , 1976, Antimicrobial Agents and Chemotherapy.

[59]  Seymour S. Cohen,et al.  Interrelation Between Guanosine Tetraphosphate Accumulation, Ribonucleic Acid Synthesis, and Streptomycin Lethality in Escherichia coli CP78 , 1975, Antimicrobial Agents and Chemotherapy.

[60]  W. Gilbert,et al.  STREPTOMYCIN, SUPPRESSION, AND THE CODE. , 1964, Proceedings of the National Academy of Sciences of the United States of America.

[61]  J. López-Novoa,et al.  New insights into the mechanism of aminoglycoside nephrotoxicity: an integrative point of view. , 2011, Kidney international.

[62]  S Falkow,et al.  FACS-optimized mutants of the green fluorescent protein (GFP). , 1996, Gene.

[63]  P. Sadowski,et al.  Cleavage-dependent Ligation by the FLP Recombinase CHARACTERIZATION OF A MUTANT FLP PROTEIN WITH AN ALTERATION IN A CATALYTIC AMINO ACID* , 1995 .