Exploring dietary patterns by using the treelet transform.

Principal component analysis (PCA) has been used extensively in the field of nutritional epidemiology to derive patterns that summarize food and nutrient intake, but interpreting it can be difficult. The authors propose the use of a new statistical technique, the treelet transform (TT), as an alternative to PCA. TT combines the quantitative pattern extraction capabilities of PCA with the interpretational advantages of cluster analysis and produces patterns involving only naturally grouped subsets of the original variables. The authors compared patterns derived using TT with those derived using PCA in a study of dietary patterns and risk of myocardial infarction among 26,155 male participants in a prospective Danish cohort. Over a median of 11.9 years of follow-up, 1,523 incident cases of myocardial infarction were ascertained. The 7 patterns derived with TT described almost as much variation as the first 7 patterns derived with PCA, for which interpretation was less clear. When the authors used multivariate Cox regression models to estimate relative risk of myocardial infarction, the significant risk factors were comparable whether the model was based on PCA or TT factors. The present study shows that TT may be a useful alternative to PCA in epidemiologic studies, leading to patterns that possess comparable explanatory power and are simple to interpret.

[1]  K. Tucker,et al.  Dietary patterns: challenges and opportunities in dietary patterns research an Experimental Biology workshop, April 1, 2006. , 2007, Journal of the American Dietetic Association.

[2]  F. Hu,et al.  Dietary patterns and risk of nonfatal acute myocardial infarction in Costa Rican adults , 2006, European Journal of Clinical Nutrition.

[3]  Frank B. Hu,et al.  Dietary pattern analysis: a new direction in nutritional epidemiology , 2002, Current opinion in lipidology.

[4]  A. Tjønneland,et al.  Validation of a semiquantitative food frequency questionnaire developed in Denmark. , 1991, International journal of epidemiology.

[5]  C. Pedersen,et al.  The Danish Civil Registration System , 2011, Scandinavian journal of public health.

[6]  W. J. Krzanowski,et al.  Recent Advances in Descriptive Multivariate Analysis. , 1996 .

[7]  M. Schulze,et al.  Can dietary patterns help us detect diet–disease associations? , 2005, Nutrition Research Reviews.

[8]  D Spiegelman,et al.  Prospective study of major dietary patterns and risk of coronary heart disease in men. , 2000, The American journal of clinical nutrition.

[9]  M. Singer,et al.  Nutritional Epidemiology , 2020, Definitions.

[10]  L. Lipworth,et al.  Diet and overall survival in elderly people , 1995, BMJ.

[11]  T. F. Andersen,et al.  The Danish National Hospital Register. A valuable source of data for modern health sciences. , 1999, Danish medical bulletin.

[12]  A. Tjønneland,et al.  Development of a semiquantitative food frequency questionnaire to assess food, energy and nutrient intake in Denmark. , 1991, International journal of epidemiology.

[13]  S. Kuriyama,et al.  Dietary patterns and cardiovascular disease mortality in Japan: a prospective cohort study. , 2007, International journal of epidemiology.

[14]  K. Tucker,et al.  Are dietary patterns useful for understanding the role of diet in chronic disease? , 2001, The American journal of clinical nutrition.

[15]  Isabelle Guyon,et al.  A Stability Based Method for Discovering Structure in Clustered Data , 2001, Pacific Symposium on Biocomputing.

[16]  Katherine L Tucker,et al.  Empirically derived eating patterns using factor or cluster analysis: a review. , 2004, Nutrition reviews.

[17]  M. Schulze,et al.  Methodological approaches to study dietary patterns in relation to risk of coronary heart disease and stroke , 2006, British Journal of Nutrition.

[18]  I T Joliffe,et al.  Principal component analysis and exploratory factor analysis , 1992, Statistical methods in medical research.

[19]  T. Jørgensen,et al.  Identification and reproducibility of dietary patterns in a Danish cohort: the Inter99 study , 2008, British Journal of Nutrition.

[20]  A. Tjønneland,et al.  Study design, exposure variables, and socioeconomic determinants of participation in Diet, Cancer and Health: A population-based prospective cohort study of 57,053 men and women in Denmark , 2007, Scandinavian journal of public health.

[21]  C. Dethlefsen,et al.  Predictive values of acute coronary syndrome discharge diagnoses differed in the Danish National Patient Registry. , 2009, Journal of clinical epidemiology.

[22]  P. Mortensen,et al.  The Danish Civil Registration System. A cohort of eight million persons. , 2006, Danish medical bulletin.

[23]  Ann B. Lee,et al.  Rejoinder of: Treelets—An adaptive multi-scale basis for spare unordered data , 2008 .

[24]  M. Schroll,et al.  Dietary patterns and mortality in Danish men and women: a prospective observational study. , 2001, The British journal of nutrition.

[25]  Ian T. Jolliffe,et al.  Rotation of ill-defined principal components , 1989 .

[26]  Daniel Gervini,et al.  Criteria for Evaluating Dimension-Reducing Components for Multivariate Data , 2004 .

[27]  J. Potter,et al.  Eating patterns and risk of colon cancer. , 1998, American journal of epidemiology.

[28]  John C. Gower,et al.  Orthogonal and projection procrustes analysis , 1995 .

[29]  K. Juel,et al.  The Danish registers of causes of death. , 1999, Danish medical bulletin.

[30]  R. Tibshirani,et al.  Supervised harvesting of expression trees , 2001, Genome Biology.

[31]  Peter Kraft,et al.  Comparison of 3 methods for identifying dietary patterns associated with risk of disease. , 2008, American journal of epidemiology.

[32]  S. Yusuf,et al.  Dietary Patterns and the Risk of Acute Myocardial Infarction in 52 Countries: Results of the INTERHEART Study , 2008, Circulation.

[33]  R. Tibshirani,et al.  Sparse Principal Component Analysis , 2006 .

[34]  S. Carlson,et al.  The Healthy Eating Index: design and applications. , 1995, Journal of the American Dietetic Association.

[35]  I. Jolliffe Rotation of principal components: choice of normalization constraints , 1995 .

[36]  L. Sechrest,et al.  Invited commentary: Factor analysis and the search for objectivity. , 1998, American journal of epidemiology.

[37]  H. Marston,et al.  Food Composition Tables. , 1944 .