Core-genome scaffold comparison reveals the prevalence that inversion events are associated with pairs of inverted repeats

[1]  M. Aguadé,et al.  A molecular perspective on a complex polymorphic inversion system with cytological evidence of multiply reused breakpoints , 2015, Heredity.

[2]  Egon A Ozer,et al.  Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt , 2014, BMC Genomics.

[3]  Montserrat Papaceit,et al.  Characterization of the breakpoints of a polymorphic inversion complex detects strict and broad breakpoint reuse at the molecular level. , 2014, Molecular biology and evolution.

[4]  D. Leach,et al.  Bacterial Genome Instability , 2014, Microbiology and Molecular Reviews.

[5]  P. Cregan,et al.  A genome-wide association study of seed protein and oil content in soybean , 2014, BMC Genomics.

[6]  Cédric Chauve,et al.  FPSAC: fast phylogenetic scaffolding of ancient contigs , 2013, Bioinform..

[7]  Simon C. Lovell,et al.  Sequencing and Characterisation of Rearrangements in Three S. pastorianus Strains Reveals the Presence of Chimeric Genes and Gives Evidence of Breakpoint Reuse , 2013, PloS one.

[8]  B. Contreras-Moreira,et al.  GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis , 2013, Applied and Environmental Microbiology.

[9]  Aaron E. Darling,et al.  The rise and fall of breakpoint reuse depending on genome resolution , 2011, BMC Bioinformatics.

[10]  Jean-Stéphane Varré,et al.  Genome dedoubling by DCJ and reversal , 2011, BMC Bioinformatics.

[11]  Steven Salzberg,et al.  Improving pan-genome annotation using whole genome multiple alignment , 2011, BMC Bioinformatics.

[12]  Rene S. Hendriksen,et al.  The Salmonella enterica Pan-genome , 2011, Microbial Ecology.

[13]  Jian-Min Chen,et al.  Genomic Rearrangements: Mutational Mechanisms , 2011 .

[14]  Steven Salzberg,et al.  Mugsy: fast multiple alignment of closely related whole genomes , 2010, Bioinform..

[15]  William C. Nierman,et al.  The Early Stage of Bacterial Genome-Reductive Evolution in the Host , 2010, PLoS pathogens.

[16]  Marie-France Sagot,et al.  Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation , 2009 .

[17]  Eric D Green,et al.  Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty , 2009, BMC Genomics.

[18]  David Sankoff,et al.  The where and wherefore of evolutionary breakpoints , 2009, Journal of biology.

[19]  Miranda Robertson,et al.  What are journals for? , 2009, Journal of Biology.

[20]  Michael Ashburner,et al.  Principles of Genome Evolution in the Drosophila melanogaster Species Group , 2007, PLoS biology.

[21]  Lee H. Harrison,et al.  Deletion of fetA Gene Sequences in Serogroup B and C Neisseria meningitidis Isolates , 2007, Journal of Clinical Microbiology.

[22]  Kaizhong Zhang,et al.  Algorithmic approaches for genome rearrangement: a review , 2006, IEEE Transactions on Systems, Man, and Cybernetics, Part C (Applications and Reviews).

[23]  Jaideep P. Sundaram,et al.  Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[24]  Phil Trinh,et al.  Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement , 2005, J. Comput. Biol..

[25]  D. Haussler,et al.  Hotspots of mammalian chromosomal evolution , 2004, Genome Biology.

[26]  S. Scherer,et al.  Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements. , 2003, Human molecular genetics.

[27]  David Sankoff,et al.  Detection and validation of single gene inversions , 2003, ISMB.

[28]  P. Pevzner,et al.  Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Pavel A. Pevzner,et al.  Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited , 2003, RECOMB '03.

[30]  Glenn Tesler,et al.  Efficient algorithms for multichromosomal genome rearrangements , 2002, J. Comput. Syst. Sci..

[31]  Glenn Tesler,et al.  GRIMM: genome rearrangements web server , 2002, Bioinform..

[32]  Y. Gray,et al.  It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements. , 2000, Trends in genetics : TIG.

[33]  M. Chandler,et al.  Bacterial transposases and retroviral integrases , 1995, Molecular microbiology.

[34]  P. Pevzner,et al.  Genome rearrangements in mammalian evolution: lessons from human and mouse genomes. , 2003, Genome research.

[35]  E. Eichler,et al.  Segmental duplications and the evolution of the primate genome , 2002, Nature Reviews Genetics.

[36]  S. Mneimneh Genome Rearrangements , 1999 .