Band-pass processing in a GPCR signaling pathway selects for NFAT transcription factor activation.

Many biological processes are rhythmic and proper timing is increasingly appreciated as being critical for development and maintenance of physiological functions. To understand how temporal modulation of an input signal influences downstream responses, we employ microfluidic pulsatile stimulation of a G-protein coupled receptor, the muscarinic M3 receptor, in single cells with simultaneous real-time imaging of both intracellular calcium and NFAT nuclear localization. Interestingly, we find that reduced stimulation with pulses of ligand can give more efficient transcription factor activation, if stimuli are timed appropriately. Our experiments and computational analyses show that M3 receptor-induced calcium oscillations form a low pass filter while calcium-induced NFAT translocation forms a high pass filter. The combination acts as a band-pass filter optimized for intermediate frequencies of stimulation. We demonstrate that receptor desensitization and NFAT translocation rates determine critical features of the band-pass filter and that the band-pass may be shifted for different receptors or NFAT dynamics. As an example, we show that the two NFAT isoforms (NFAT4 and NFAT1) have shifted band-pass windows for the same receptor. While we focus specifically on the M3 muscarinic receptor and NFAT translocation, band-pass processing is expected to be a general theme that applies to multiple signaling pathways.

[1]  Nir Friedman,et al.  Dynamic response diversity of NFAT isoforms in individual living cells. , 2013, Molecular cell.

[2]  Shuichi Takayama,et al.  Phase-Locked Signals Elucidate Circuit Architecture of an Oscillatory Pathway , 2010, PLoS Comput. Biol..

[3]  Ghislain Belliart-Guérin,et al.  Slow oscillations in two pairs of dopaminergic neurons gate long-term memory formation in Drosophila , 2012, Nature Neuroscience.

[4]  Shuichi Takayama,et al.  Computerized microfluidic cell culture using elastomeric channels and Braille displays. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[5]  A Goldbeter,et al.  Pulsatile signaling in intercellular communication. Periodic stimuli are more efficient than random or chaotic signals in a model based on receptor desensitization. , 1992, Biophysical journal.

[6]  D. S. Broomhead,et al.  Pulsatile Stimulation Determines Timing and Specificity of NF-κB-Dependent Transcription , 2009, Science.

[7]  J. Molkentin,et al.  Novel blocker of NFAT activation inhibits IL-6 production in human myometrial arteries and reduces vascular smooth muscle cell proliferation. , 2007, American journal of physiology. Cell physiology.

[8]  G. Lahav,et al.  Encoding and Decoding Cellular Information through Signaling Dynamics , 2013, Cell.

[9]  Taichiro Tomida,et al.  NFAT functions as a working memory of Ca2+ signals in decoding Ca2+ oscillation , 2003, The EMBO journal.

[10]  I. Llano,et al.  Activation of Metabotropic Glutamate Receptors Induces Periodic Burst Firing and Concomitant Cytosolic Ca2+ Oscillations in Cerebellar Interneurons , 2009, The Journal of Neuroscience.

[11]  N. A. ALADJALOVA,et al.  Infra-Slow Rhythmic Oscillations of The Steady Potential of the Cerebral Cortex , 1957, Nature.

[12]  Ryan T. Strachan,et al.  Distinct Phosphorylation Sites on the β2-Adrenergic Receptor Establish a Barcode That Encodes Differential Functions of β-Arrestin , 2011, Science Signaling.

[13]  Andre Levchenko,et al.  Oscillatory signaling processes: the how, the why and the where. , 2010, Current opinion in genetics & development.

[14]  M. Yaffe,et al.  Affinity-driven peptide selection of an NFAT inhibitor more selective than cyclosporin A. , 1999, Science.

[15]  K. Linkenkaer-Hansen,et al.  Long-Range Temporal Correlations and Scaling Behavior in Human Brain Oscillations , 2001, The Journal of Neuroscience.

[16]  R. Neubig,et al.  Microfluidic interrogation and mathematical modeling of multi-regime calcium signaling dynamics. , 2013, Integrative biology : quantitative biosciences from nano to macro.

[17]  Y. Dunant,et al.  Sustained oscillations of acetylcholine during nerve stimulation , 1974, Nature.

[18]  A. Levchenko,et al.  Signaling Diversity of PKA Achieved Via a Ca2+-cAMP-PKA Oscillatory Circuit , 2010, Nature chemical biology.

[19]  A. Tengholm,et al.  Oscillations of cyclic AMP in hormone-stimulated insulin-secreting β-cells , 2006, Nature.

[20]  E. Lammert,et al.  Calcineurin/NFATc signaling: role in postnatal β cell development and diabetes mellitus. , 2012, Developmental cell.

[21]  V. Gurevich Arrestins - Pharmacology and Therapeutic Potential , 2014, Handbook of Experimental Pharmacology.

[22]  A. Tengholm,et al.  Oscillatory control of insulin secretion , 2009, Molecular and Cellular Endocrinology.

[23]  Rolf Isermann,et al.  Identification of Dynamic Systems , 2011 .

[24]  Keli Xu,et al.  Calcium oscillations increase the efficiency and specificity of gene expression , 1998, Nature.

[25]  Lopamudra Giri,et al.  A G-protein subunit translocation embedded network motif underlies GPCR regulation of calcium oscillations. , 2014, Biophysical journal.

[26]  Yongxin Zhao,et al.  An Expanded Palette of Genetically Encoded Ca2+ Indicators , 2011, Science.

[27]  D. Wiest,et al.  On the dynamics of TCR:CD3 complex cell surface expression and downmodulation. , 2000, Immunity.

[28]  Jeremy Gunawardena,et al.  Tunable Signal Processing Through Modular Control of Transcription Factor Translocation , 2013, Science.

[29]  Andre Levchenko,et al.  Oscillatory Phosphorylation of Yeast Fus3 MAP Kinase Controls Periodic Gene Expression and Morphogenesis , 2008, Current Biology.

[30]  Martin Falcke,et al.  Reliable Encoding of Stimulus Intensities Within Random Sequences of Intracellular Ca2+ Spikes , 2014, Science Signaling.

[31]  Shanshan Song,et al.  Irregular Ca2+ Oscillations Regulate Transcription via Cumulative Spike Duration and Spike Amplitude* , 2012, The Journal of Biological Chemistry.

[32]  Y Kaneoke,et al.  Multisecond oscillations in firing rate in the basal ganglia: robust modulation by dopamine receptor activation and anesthesia. , 1999, Journal of neurophysiology.

[33]  K. Sneppen,et al.  Simplified models of biological networks. , 2010, Annual review of biophysics.

[34]  R. Neubig,et al.  Hi-Fi transmission of periodic signals amid cell-to-cell variability. , 2011, Molecular bioSystems.

[35]  Andre Levchenko,et al.  Pulsing cells: How fast is too fast? , 2008, HFSP journal.

[36]  John R. Terry,et al.  Encoding and Decoding Mechanisms of Pulsatile Hormone Secretion , 2010, Journal of neuroendocrinology.

[37]  Arthur Christopoulos,et al.  Muscarinic acetylcholine receptors: novel opportunities for drug development , 2014, Nature Reviews Drug Discovery.

[38]  P. Cullen,et al.  The frequencies of calcium oscillations are optimized for efficient calcium-mediated activation of Ras and the ERK/MAPK cascade. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[39]  C. Ricordi,et al.  Alpha cells secrete acetylcholine as a non-neuronal paracrine signal priming human beta cell function , 2011, Nature Medicine.

[40]  Wendell A Lim,et al.  Design principles of regulatory networks: searching for the molecular algorithms of the cell. , 2013, Molecular cell.

[41]  Roger Y. Tsien,et al.  Cell-permeant caged InsP3 ester shows that Ca2+ spike frequency can optimize gene expression , 1998, Nature.

[42]  Megan N. McClean,et al.  Signal processing by the HOG MAP kinase pathway , 2008, Proceedings of the National Academy of Sciences.

[43]  Amy E Palmer,et al.  Measuring calcium signaling using genetically targetable fluorescent indicators , 2006, Nature Protocols.

[44]  Jared E. Toettcher,et al.  Using Optogenetics to Interrogate the Dynamic Control of Signal Transmission by the Ras/Erk Module , 2013, Cell.

[45]  A. Goldbeter,et al.  Biochemical Oscillations And Cellular Rhythms: Contents , 1996 .

[46]  H. Steven Wiley,et al.  Receptor downregulation and desensitization enhance the information processing ability of signalling receptors , 2007, BMC Syst. Biol..

[47]  E. Ben-Jacob,et al.  Glutamate regulation of calcium and IP3 oscillating and pulsating dynamics in astrocytes , 2009, Journal of biological physics.

[48]  D. Kirschner,et al.  A methodology for performing global uncertainty and sensitivity analysis in systems biology. , 2008, Journal of theoretical biology.