Peptide Hydrolysis by Metal-Cyclen Complexes and Their Analogues: Insights from Theoretical Studies
暂无分享,去创建一个
[1] Rajeev Prabhakar,et al. Theoretical insights into the mechanism of selective Peptide bond hydrolysis catalyzed by [Pd(H(2)O)(4)](2+). , 2010, Inorganic chemistry.
[2] Hwangseo Park,et al. Peptide-cleaving catalyst selective for peptide deformylase. , 2005, Journal of the American Chemical Society.
[3] S. Taylor,et al. Mapping substrate-induced conformational changes in cAMP-dependent protein kinase by protein footprinting. , 1998, Biochemistry.
[4] B. Nair,et al. Chromium(III)-mediated structural modification of glycoprotein: impact of the ligand and the oxidants. , 2001, Biochemical and biophysical research communications.
[5] J. Tang,et al. Human aspartic protease memapsin 2 cleaves the beta-secretase site of beta-amyloid precursor protein. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[6] Judith N. Burstyn,et al. Toward the development of metal-based synthetic nucleases and peptidases: a rationale and progress report in applying the principles of coordination chemistry , 1998 .
[7] D. Truhlar,et al. A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions. , 2006, The Journal of chemical physics.
[8] Edward I. Solomon,et al. Structural and Functional Aspects of Metal Sites in Biology. , 1996, Chemical reviews.
[9] C. Kumar,et al. Photocleavage of lysozyme by cobalt(III) complexes. , 2005, Inorganic chemistry.
[10] Junghun Suh,et al. Cleavage Agents for Soluble Oligomers of Amyloid β Peptides , 2007 .
[11] Alanna Schepartz,et al. A new strategy for directed protein cleavage , 1992 .
[12] G. Mocz. Vanadate-mediated photocleavage of rabbit skeletal myosin. , 1989, European journal of biochemistry.
[13] Xiang Zou,et al. Relationship between effective nucleophilic catalysis in the hydrolysis of esters with poor leaving groups and the lifetime of the tetrahedral intermediate , 1984 .
[14] E. Koo,et al. Amyloid Precursor Protein Trafficking, Processing, and Function* , 2008, Journal of Biological Chemistry.
[15] Jacopo Tomasi,et al. A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to isotropic and anisotropic dielectrics , 1997 .
[16] R. Breslow,et al. Biomimetic Reactions Catalyzed by Cyclodextrins and Their Derivatives. , 1998, Chemical reviews.
[17] Margareta R. A. Blomberg,et al. Modeling Electron Transfer in Biochemistry: A Quantum Chemical Study of Charge Separation in Rhodobacter sphaeroides and Photosystem II , 1998 .
[18] Robert M. Smith† and,et al. The pH-Rate Profile for the Hydrolysis of a Peptide Bond , 1998 .
[19] Kathryn B. Grant and Miki Kassai. Major Advances in the Hydrolysis of Peptides and Proteins by Metal Ions and Complexes , 2006 .
[20] Miloš I. Djuran,et al. A study of the reactions of a methionine- and histidine-containing tetrapeptide with different Pd(II) and Pt(II) complexes: selective cleavage of the amide bond by platination of the peptide and steric modification of the catalyst. , 2009, Dalton Transactions.
[21] S. Karlish,et al. Fe-catalyzed cleavage of the alpha subunit of Na/K-ATPase: evidence for conformation-sensitive interactions between cytoplasmic domains. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[22] A. Becke,et al. Density-functional exchange-energy approximation with correct asymptotic behavior. , 1988, Physical review. A, General physics.
[23] S. Parsons,et al. Zinc(II) complexes with intramolecular amide oxygen coordination as models of metalloamidases. , 2004, Dalton transactions.
[24] Andrea Erxleben,et al. Interaction of molybdocene dichloride with cysteine-containing peptides: coordination, regioselective hydrolysis, and intramolecular aminolysis. , 2005, Inorganic chemistry.
[25] Richard Wolfenden,et al. Rates of Uncatalyzed Peptide Bond Hydrolysis in Neutral Solution and the Transition State Affinities of Proteases , 1996 .
[26] J. M. Delfino,et al. Conformation-dependent cleavage of staphylococcal nuclease with a disulfide-linked iron chelate. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[27] J. Suh,et al. Kinetic Studies on Proteolysis by Co(III) Complex of Cyclen , 2008 .
[28] K. Jeong,et al. Cleavage agents for soluble oligomers of human islet amyloid polypeptide , 2008, JBIC Journal of Biological Inorganic Chemistry.
[29] W. Bal,et al. Interactions of Nickel(II) with histones: interactions of Nickel(II) with CH3CO-Thr-Glu-Ser-His-His-Lys-NH2, a peptide modeling the potential metal binding site in the "C-Tail" region of histone H2A. , 1998, Chemical research in toxicology.
[30] R. Ebright,et al. Determinants of RNA polymerase alpha subunit for interaction with beta, beta', and sigma subunits: hydroxyl-radical protein footprinting. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[31] Joong Won Jeon,et al. Toward protein-cleaving catalytic drugs: artificial protease selective for myoglobin. , 2003, Bioorganic & medicinal chemistry.
[32] M. Sosa,et al. Proton exchange and base hydrolysis of syn,anti-cis-dichloro(1,4,7,10-tetra-azacyclododecane)cobalt(III) cations , 1985 .
[33] Junghun Suh,et al. Model Studies of Metalloenzymes Involving Metal Ions as Lewis Acid Catalysts , 1992 .
[34] A. Becke. Density-functional thermochemistry. III. The role of exact exchange , 1993 .
[35] Young Eun Cheon,et al. Proteolytic activity of Co(III) complex of 1-oxa-4,7,10-triazacyclododecane: a new catalytic center for peptide-cleavage agents , 2008, JBIC Journal of Biological Inorganic Chemistry.
[36] Junghun Suh,et al. Target-selective peptide-cleaving catalysts as a new paradigm in drug design. , 2009, Chemical Society reviews.
[37] Alanna Schepartz,et al. Site-Specific Cleavage of the Protein Calmodulin Using a Trifluoperazine-Based Affinity Reagent , 1990 .
[38] W. R. Wadt,et al. Ab initio effective core potentials for molecular calculations , 1984 .
[39] N. Kostić,et al. Peptide hydrolysis promoted by polynuclear and organometallic complexes of palladium(II) and platinum(II) , 1996 .
[40] E. Fleischer,et al. Carbonato(1,4,7,10‐tetraazacyclododecane)cobalt(III) perchlorate monohydrate , 1976 .
[41] H Y Shrivastava,et al. Cleavage of human orosomucoid by a chromium(V) species: relevance in biotoxicity of chromium. , 2000, Biochemical and biophysical research communications.
[42] W. Lipscomb,et al. Transition state analogue L-leucinephosphonic acid bound to bovine lens leucine aminopeptidase: X-ray structure at 1.65 A resolution in a new crystal form. , 1995, Biochemistry.
[43] A. Walts,et al. Protease activity of 1,10-phenanthroline-copper(I). Targeted scission of the catalytic site of carbonic anhydrase. , 1998, Biochemistry.
[44] D. Sigman,et al. Helix packing of lactose permease in Escherichia coli studied by site-directed chemical cleavage. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[45] J. Suh,et al. Synthetic artificial peptidases and nucleases using macromolecular catalytic systems. , 2003, Accounts of chemical research.
[46] J. Vicente,et al. Aqua palladium complexes: synthesis, properties and applications , 2005 .
[47] J. Benner,et al. Identification of the metal-binding sites of restriction endonucleases by Fe2+-mediated oxidative cleavage. , 2000, Biochemistry.
[48] Yves M. Galante and Cristina Formantici. Enzyme Applications in Detergency and in Manufacturing Industries , 2003 .
[49] Junghun Suh,et al. New chelating ligands for Co(III)-based peptide-cleaving catalysts selective for pathogenic proteins of amyloidoses , 2011, JBIC Journal of Biological Inorganic Chemistry.
[50] William N. Lipscomb,et al. Recent Advances in Zinc Enzymology. , 1996, Chemical reviews.
[51] Gerard Parkin,et al. Synthetic analogues relevant to the structure and function of zinc enzymes. , 2004, Chemical reviews.
[52] P. R. Norman,et al. The kinetics and mechanism of aquation and base hydrolysis of the cis-[Co(cyclen)Cl2]+ cation (cyclen=1,4,7,10-tetraazacyclododecane) , 1997 .
[53] A. Joachimiak,et al. Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism , 2006, Nature.
[54] X. You,et al. Kinetic study of stereochemical and other factors governing hydrolytic cleavage of a peptide ligand in binuclear palladium(II) complexes , 1996 .
[55] F. Colland,et al. The interaction between σS, the stationary phase σ factor, and the core enzyme of Escherichia coli RNA polymerase , 2002, Genes to cells : devoted to molecular & cellular mechanisms.
[56] E. Blinn,et al. Copper(II) complexes containing a 12-membered macrocyclic ligand , 1978 .
[57] Edyta Kopera,et al. Sequence-specific Ni(II)-dependent peptide bond hydrolysis for protein engineering. Combinatorial library determination of optimal sequences. , 2010, Journal of the American Chemical Society.
[58] D. Buckingham,et al. Cobalt(III)-promoted hydrolysis of amino acid esters and peptides and the synthesis of small peptides , 1987 .
[59] David E. Hansen,et al. DIRECT MEASUREMENT OF THE UNCATALYZED RATE OF HYDROLYSIS OF A PEPTIDE BOND , 1996 .
[60] G. Siuzdak,et al. Mass spectrometry in viral proteomics. , 2000, Accounts of chemical research.
[61] Peter G. Schultz,et al. A new strategy for selective protein cleavage , 1990 .
[62] Miki Kassai,et al. Unprecedented acceleration of zirconium(IV)-assisted peptide hydrolysis at neutral pH. , 2004, Inorganic chemistry.
[63] M. Dizdaroglu,et al. Ni(II) specifically cleaves the C-terminal tail of the major variant of histone H2A and forms an oxidative damage-mediating complex with the cleaved-off octapeptide. , 2000, Chemical research in toxicology.
[64] Jin Hong,et al. His-oriented peptide hydrolysis promoted by cis-[Pt(en)(H2O)2]2+: a new specific peptide cleavage site. , 2010, Inorganic chemistry.
[65] T. Rana,et al. Transfer of oxygen from an artificial protease to peptide carbon during proteolysis. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[66] S P Leach,et al. Protein cleavage by transition metal complexes bearing amino acid substituents. , 1998, Biochimica et biophysica acta.
[67] J. Chin,et al. Developing artificial hydrolytic metalloenzymes by a unified mechanistic approach , 1991 .
[68] E. Kimura,et al. Crystal structure of dinitro(1,4,7,10-tetraazacyclododecane)cobalt(III) chloride , 1974 .
[69] Kenneth D. Karlin,et al. Facile amide hydrolysis effected by dinuclear copper complexes , 1993 .
[70] A. Gunasekera,et al. Binding of the sigma 70 protein to the core subunits of Escherichia coli RNA polymerase, studied by iron-EDTA protein footprinting. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[71] C. R. Clark,et al. Kinetic origin of the chelate effect. Base hydrolysis, H-exchange reactivity, and structures of syn,anti-[Co(cyclen)(NH3)2]3+ and syn,anti-[Co(cyclen)(diamine)]3+ ions (diamine = H2N(CH2)2NH2, H2N(CH2)3NH2). , 2000, Inorganic chemistry.
[72] G. Siuzdak,et al. Identification of viral mutants by mass spectrometry. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[73] N. Kostić,et al. Palladium(II) complex as a sequence-specific peptidase: hydrolytic cleavage under mild conditions of X-Pro peptide bonds in X-Pro-Met and X-Pro-His segments. , 2003, Journal of the American Chemical Society.
[74] F. Menger,et al. Fast hydrolysis of an aliphatic amide at neutral pH and ambient temperature. A peptidase model , 1988 .
[75] I R Gibbons,et al. Iron(III)-mediated photolysis of outer arm dynein ATPase from sea urchin sperm flagella. , 1990, The Journal of biological chemistry.
[76] T. Heyduk,et al. Mapping cyclic nucleotide‐induced conformational changes in cyclicAMP receptor protein by a protein footprinting technique using different chemical proteases , 2008, Protein science : a publication of the Protein Society.
[77] Jennie Weston,et al. Mode of action of bi- and trinuclear zinc hydrolases and their synthetic analogues. , 2005, Chemical reviews.
[78] J. Hardy,et al. The Amyloid Hypothesis of Alzheimer ’ s Disease : Progress and Problems on the Road to Therapeutics , 2009 .
[79] N. Kostić,et al. Transition-metal complexes as enzyme-like reagents for protein cleavage: complex cis-[Pt(en)(H2O)2]2+ as a new methionine-specific protease. , 2003, Chemistry.
[80] J. Britten,et al. Kinetics and mechanism of a cobalt(III) complex catalyzed hydration of nitriles , 1993 .
[81] J. Powers,et al. Irreversible inhibitors of serine, cysteine, and threonine proteases. , 2002, Chemical reviews.
[82] Edyta Kopera,et al. Selective peptide bond hydrolysis of cysteine peptides in the presence of Ni(II) ions. , 2011, Journal of inorganic biochemistry.
[83] William S Sheldrick,et al. Cisplatin-mediated selective hydrolytic cleavage of methionine-containing peptides with neighboring serine or histidine residues. , 2004, Journal of inorganic biochemistry.
[84] E. H. Creaser,et al. Qualitative determination of N-terminal amino acids of peptides and proteins with cobalt(3) chelates. , 1973, The Biochemical journal.
[85] J. Suh,et al. Soluble artificial metalloproteases with broad substrate selectivity, high reactivity, and high thermal and chemical stabilities , 2010, JBIC Journal of Biological Inorganic Chemistry.
[86] V. Markovtsov,et al. Mapping of Catalytic Residues in the RNA Polymerase Active Center , 1996, Science.
[87] B. Dunn. Structure and mechanism of the pepsin-like family of aspartic peptidases. , 2002, Chemical reviews.
[88] C. G. Edmonds,et al. Vanadate catalyzes photocleavage of adenylate kinase at proline-17 in the phosphate-binding loop. , 1992, Biochemistry.
[89] R. Delgado,et al. Oxatriaza macrocyclic ligands: studies of protonation and metal complexation , 1991 .
[90] A. Arif,et al. Amide hydrolysis reactivity of a N4O-ligated zinc complex: comparison of kinetic and themodynamic parameters with those of the corresponding amide methanolysis reaction. , 2007, Inorganic chemistry.
[91] Junghun Suh,et al. Comparable rates for cleavage of amide and ester bonds through nucleophilic attack by carboxylate anion and general acid catalysis by metal-bound water in a carboxypeptidase A model , 1992 .
[92] M. Sosa-Torres,et al. A new isomer of the cis-[Co(cyclen)Cl2]+ cation (cyclen = 1,4,7,10-tetraazacyclododecane) , 1995 .
[93] C. G. Edmonds,et al. Chemistry and mechanism of vanadate-promoted photooxidative cleavage of myosin. , 1996, Biochemistry.
[94] J. Suh,et al. Angiotensin-cleaving catalysts: conversion of N-terminal aspartate to pyruvate through oxidative decarboxylation catalyzed by Co(III)cyclen , 2005, JBIC Journal of Biological Inorganic Chemistry.
[95] T. Rana,et al. Specific cleavage of a protein by an attached iron chelate , 1990 .