Genome-wide DNA methylation profiling in differentiating Crohn’s disease from intestinal tuberculosis

[1]  Tao-Tao Liu,et al.  Genome-wide DNA methylation profiling and gut flora analysis in intestinal polyps patients , 2021, European journal of gastroenterology & hepatology.

[2]  L. Peyrin-Biroulet,et al.  The Inflammatory Bowel Disease Transcriptome and Metatranscriptome Meta-Analysis (IBD TaMMA) framework , 2021, Nature Computational Science.

[3]  C. Süss,et al.  KCNN4 Expression Is Elevated in Inflammatory Bowel Disease: This Might Be a Novel Marker and Therapeutic Option Targeting Potassium Channels. , 2020, Journal of gastrointestinal and liver diseases : JGLD.

[4]  H. Park,et al.  Genome-Wide Analysis of the DNA Methylation Profile Identifies the fragile histidine triad (FHIT) Gene as a New Promising Biomarker of Crohn’s Disease , 2020, Journal of clinical medicine.

[5]  M. Kanda,et al.  KCNJ15 Expression and Malignant Behavior of Esophageal Squamous Cell Carcinoma , 2020, Annals of Surgical Oncology.

[6]  Judy H. Cho,et al.  Blood-Derived DNA Methylation Signatures of Crohn's Disease and Severity of Intestinal Inflammation. , 2019, Gastroenterology.

[7]  Zesong Li,et al.  Loss of KCNJ15 expression promotes malignant phenotypes and correlates with poor prognosis in renal carcinoma , 2019, Cancer management and research.

[8]  A. Dusé,et al.  The role of epigenetics, bacterial and host factors in progression of Mycobacterium tuberculosis infection. , 2018, Tuberculosis.

[9]  Y. Dor,et al.  Principles of DNA methylation and their implications for biology and medicine , 2018, The Lancet.

[10]  David M. Evans,et al.  Assessing the Role of DNA Methylation-Derived Neutrophil-to-Lymphocyte Ratio in Rheumatoid Arthritis , 2018, Journal of immunology research.

[11]  J. McNeil,et al.  Blood DNA methylation as a potential biomarker of dementia: A systematic review , 2018, Alzheimer's & Dementia.

[12]  Nima Hamidi,et al.  Worldwide incidence and prevalence of inflammatory bowel disease in the 21st century: a systematic review of population-based studies , 2017, The Lancet.

[13]  Yuan Tian,et al.  ChAMP: updated methylation analysis pipeline for Illumina BeadChips , 2017, Bioinform..

[14]  C. Buskens,et al.  3rd European Evidence-based Consensus on the Diagnosis and Management of Crohn's Disease 2016: Part 2: Surgical Management and Special Situations. , 2017, Journal of Crohn's & colitis.

[15]  A. Ananthakrishnan,et al.  Pivot to Asia: inflammatory bowel disease burden , 2017, Intestinal research.

[16]  Peter W. Laird,et al.  Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes , 2016, Nucleic acids research.

[17]  S. Mahadevan,et al.  The role of epigenetics in tuberculosis infection. , 2016, Epigenomics.

[18]  J. Cabral,et al.  Role of epithelial ion transports in inflammatory bowel disease. , 2016, American journal of physiology. Gastrointestinal and liver physiology.

[19]  P. Das,et al.  Proteome analysis of the macroscopically affected colonic mucosa of Crohn’s disease and intestinal tuberculosis , 2016, Scientific Reports.

[20]  Z. Ran,et al.  Intestinal tuberculosis and Crohn's disease: challenging differential diagnosis , 2016, Journal of digestive diseases.

[21]  V. Rakyan,et al.  Assessing DNA methylation in the developing human intestinal epithelium: potential link to inflammatory bowel disease , 2015, Mucosal Immunology.

[22]  J. Mill,et al.  DNA Methylation Profiling in Inflammatory Bowel Disease Provides New Insights into Disease Pathogenesis. , 2016, Journal of Crohn's & colitis.

[23]  C. Romano,et al.  Inflammatory Bowel Disease: Genetics, Epigenetics, and Pathogenesis , 2015, Front. Immunol..

[24]  Jonathan Braun,et al.  Diagnostic and Prognostic Microbial Biomarkers in Inflammatory Bowel Diseases. , 2015, Gastroenterology.

[25]  S. Baker,et al.  Potassium channel KCNJ15 is required for histamine-stimulated gastric acid secretion. , 2015, American journal of physiology. Cell physiology.

[26]  Jacob E. Kurlander,et al.  A Meta-Analysis of the Utility of C-Reactive Protein, Erythrocyte Sedimentation Rate, Fecal Calprotectin, and Fecal Lactoferrin to Exclude Inflammatory Bowel Disease in Adults With IBS , 2015, The American Journal of Gastroenterology.

[27]  M. Gazouli,et al.  DNA Methylation Profile of Genes Involved in Inflammation and Autoimmunity in Inflammatory Bowel Disease , 2014, Medicine.

[28]  S. Wong,et al.  Systematic review with meta‐analysis: Accuracy of interferon‐gamma releasing assay and anti‐Saccharomyces cerevisiae antibody in differentiating intestinal tuberculosis from Crohn's disease in Asians , 2014, Journal of gastroenterology and hepatology.

[29]  Rafael A. Irizarry,et al.  Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays , 2014, Bioinform..

[30]  T. Gould,et al.  Antenatal prediction of postpartum depression with blood DNA methylation biomarkers , 2014, Molecular Psychiatry.

[31]  C. Ozturk,et al.  Neutrophil–lymphocyte ratio as an important assessment tool , 2014, Expert review of cardiovascular therapy.

[32]  Sean R. Davis,et al.  NCBI GEO: archive for functional genomics data sets—update , 2012, Nucleic Acids Res..

[33]  Peter A. Jones Functions of DNA methylation: islands, start sites, gene bodies and beyond , 2012, Nature Reviews Genetics.

[34]  Devin C. Koestler,et al.  DNA methylation arrays as surrogate measures of cell mixture distribution , 2012, BMC Bioinformatics.

[35]  Guangchuang Yu,et al.  clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.

[36]  Xavier Robin,et al.  pROC: an open-source package for R and S+ to analyze and compare ROC curves , 2011, BMC Bioinformatics.

[37]  S. Srivastava,et al.  Clinical, Endoscopic, and Histological Differentiations Between Crohn's Disease and Intestinal Tuberculosis , 2010, The American Journal of Gastroenterology.

[38]  T. Hansen,et al.  Identification of KCNJ15 as a susceptibility gene in Asian patients with type 2 diabetes mellitus. , 2010, American journal of human genetics.

[39]  S. Goodman,et al.  Sensitive digital quantification of DNA methylation in clinical samples , 2009, Nature Biotechnology.

[40]  Subrata Ghosh,et al.  Differentiating Intestinal Tuberculosis From Crohn's Disease: A Diagnostic Challenge , 2009, The American Journal of Gastroenterology.

[41]  J M Delabar,et al.  Chromosome 21 KIR channels in brain development. , 2003, Journal of neural transmission. Supplementum.

[42]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[43]  J. Muniz [Anorectal tuberculosis]. , 1960, Revista espanola de las enfermedades del aparato digestivo y de la nutricion.