Mycobacterium tuberculosis Exploits Asparagine to Assimilate Nitrogen and Resist Acid Stress during Infection

Mycobacterium tuberculosis is an intracellular pathogen. Within macrophages, M. tuberculosis thrives in a specialized membrane-bound vacuole, the phagosome, whose pH is slightly acidic, and where access to nutrients is limited. Understanding how the bacillus extracts and incorporates nutrients from its host may help develop novel strategies to combat tuberculosis. Here we show that M. tuberculosis employs the asparagine transporter AnsP2 and the secreted asparaginase AnsA to assimilate nitrogen and resist acid stress through asparagine hydrolysis and ammonia release. While the role of AnsP2 is partially spared by yet to be identified transporter(s), that of AnsA is crucial in both phagosome acidification arrest and intracellular replication, as an M. tuberculosis mutant lacking this asparaginase is ultimately attenuated in macrophages and in mice. Our study provides yet another example of the intimate link between physiology and virulence in the tubercle bacillus, and identifies a novel pathway to be targeted for therapeutic purposes.

[1]  P. Carroll,et al.  Functional Analysis of GlnE, an Essential Adenylyl Transferase in Mycobacterium tuberculosis , 2008, Journal of bacteriology.

[2]  S. Fischer,et al.  Analysis of hydrophilic metabolites by high-performance liquid chromatography-mass spectrometry using a silica hydride-based stationary phase. , 2008, Journal of chromatography. A.

[3]  I. Beacham,et al.  Distinct physiological roles for the two L-asparaginase isozymes of Escherichia coli. , 2013, Biochemical and biophysical research communications.

[4]  G. Hatfull,et al.  Recombineering in Mycobacterium tuberculosis , 2007, Nature Methods.

[5]  John Chan,et al.  SecA2 functions in the secretion of superoxide dismutase A and in the virulence of Mycobacterium tuberculosis , 2003, Molecular microbiology.

[6]  Thomas R. Ioerger,et al.  Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis , 2012, PLoS pathogens.

[7]  Y. Poquet,et al.  A central role for aspartate in Mycobacterium tuberculosis physiology and virulence , 2013, Front. Cell. Infect. Microbiol..

[8]  E. Kellenberger,et al.  Low temperature embedding with Lowicryl resins: two new formulations and some applications , 1985, Journal of microscopy.

[9]  Sabine Ehrt,et al.  Controlling gene expression in mycobacteria with anhydrotetracycline and Tet repressor , 2005, Nucleic acids research.

[10]  M. Horwitz,et al.  The metabolic activity of Mycobacterium tuberculosis, assessed by use of a novel inducible GFP expression system, correlates with its capacity to inhibit phagosomal maturation and acidification in human macrophages , 2008, Molecular microbiology.

[11]  Wilbert Bitter,et al.  Type VII secretion — mycobacteria show the way , 2007, Nature Reviews Microbiology.

[12]  B. Barrell,et al.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence , 1998, Nature.

[13]  Yang Liu,et al.  Transcriptional Adaptation of Mycobacterium tuberculosis within Macrophages , 2003, The Journal of experimental medicine.

[14]  D. Schnappinger,et al.  Evaluating the Sensitivity of Mycobacterium tuberculosis to Biotin Deprivation Using Regulated Gene Expression , 2011, PLoS pathogens.

[15]  M H Saier,et al.  The amino acid/polyamine/organocation (APC) superfamily of transporters specific for amino acids, polyamines and organocations. , 2000, Microbiology.

[16]  V. Novik,et al.  Metabolic diversity in Campylobacter jejuni enhances specific tissue colonization. , 2008, Cell host & microbe.

[17]  D. Eisenberg,et al.  Unique Transcriptome Signature of Mycobacterium tuberculosis in Pulmonary Tuberculosis , 2006, Infection and Immunity.

[18]  David G. Russell,et al.  Mycobacterium tuberculosis: here today, and here tomorrow , 2001, Nature Reviews Molecular Cell Biology.

[19]  J. Reyrat,et al.  Mycobacterium bovis BCG Urease Attenuates Major Histocompatibility Complex Class II Trafficking to the Macrophage Cell Surface , 2004, Infection and Immunity.

[20]  R. Brosch,et al.  Phagosomal Rupture by Mycobacterium tuberculosis Results in Toxicity and Host Cell Death , 2012, PLoS pathogens.

[21]  J. Heringa,et al.  General secretion signal for the mycobacterial type VII secretion pathway , 2012, Proceedings of the National Academy of Sciences.

[22]  S. Porwollik,et al.  L-asparaginase II produced by Salmonella typhimurium inhibits T cell responses and mediates virulence. , 2012, Cell host & microbe.

[23]  E. Rubin,et al.  Genes required for mycobacterial growth defined by high density mutagenesis , 2003, Molecular microbiology.

[24]  Alain Croisy,et al.  Progress in analytical imaging of the cell by dynamic secondary ion mass spectrometry (SIMS microscopy). , 2005, Biochimica et biophysica acta.

[25]  Douglas Benson,et al.  High-resolution quantitative imaging of mammalian and bacterial cells using stable isotope mass spectrometry , 2006, Journal of biology.

[26]  D. Schnappinger,et al.  Mycobacterial survival strategies in the phagosome: defence against host stresses , 2009, Cellular microbiology.

[27]  Y. Arakawa,et al.  Biochemical and pathophysiological characterization of Helicobacter pylori asparaginase , 2011, Microbiology and immunology.

[28]  W. Jacobs,et al.  Two Nonredundant SecA Homologues Function in Mycobacteria , 2001, Journal of bacteriology.

[29]  S. Cole,et al.  ESAT-6 secretion-independent impact of ESX-1 genes espF and espG1 on virulence of Mycobacterium tuberculosis. , 2011, The Journal of infectious diseases.

[30]  C. de Chastellier The many niches and strategies used by pathogenic mycobacteria for survival within host macrophages. , 2009, Immunobiology.

[31]  D. Russell,et al.  Mycobacterium tuberculosis invasion of macrophages: linking bacterial gene expression to environmental cues. , 2007, Cell host & microbe.

[32]  P. Schlesinger,et al.  Cytokine activation leads to acidification and increases maturation of Mycobacterium avium-containing phagosomes in murine macrophages. , 1998, Journal of immunology.

[33]  B. Gicquel,et al.  Urease activity does not contribute dramatically to persistence of Mycobacterium bovis bacillus Calmette-Guérin , 1996, Infection and immunity.

[34]  Silvia Franchini,et al.  Cell-Cycle Inhibition by Helicobacter pylori L-Asparaginase , 2010, PloS one.

[35]  P. Chavrier,et al.  V-ATPase: a potential pH sensor , 2006, Nature Cell Biology.

[36]  M. Horwitz,et al.  All four Mycobacterium tuberculosis glnA genes encode glutamine synthetase activities but only GlnA1 is abundantly expressed and essential for bacterial homeostasis , 2005, Molecular microbiology.

[37]  J. Hainfeld,et al.  Ni-NTA-gold clusters target His-tagged proteins. , 1999, Journal of structural biology.

[38]  D. Russell Mycobacterium tuberculosis and the intimate discourse of a chronic infection , 2011, Immunological reviews.

[39]  C. Ratledge The physiology of the mycobacteria. , 1976, Advances in microbial physiology.

[40]  A. Burkovski,et al.  A Genomic View on Nitrogen Metabolism and Nitrogen Control in Mycobacteria , 2008, Journal of Molecular Microbiology and Biotechnology.

[41]  R. Handschumacher,et al.  Evaluation of L-asparagine metabolism in animals and man. , 1970, Cancer research.

[42]  Gérald Larrouy-Maumus,et al.  Mycobacterium tuberculosis nitrogen assimilation and host colonization require aspartate , 2013, Nature chemical biology.

[43]  M. P. Tan,et al.  Urease Activity Represents an Alternative Pathway for Mycobacterium tuberculosis Nitrogen Metabolism , 2012, Infection and Immunity.

[44]  Christopher M. Sassetti,et al.  Mycobacterial persistence requires the utilization of host cholesterol , 2008, Proceedings of the National Academy of Sciences.

[45]  Sabine Ehrt,et al.  Metabolomics of Mycobacterium tuberculosis reveals compartmentalized co-catabolism of carbon substrates. , 2010, Chemistry and Biology.

[46]  Sabine Ehrt,et al.  Expression profiling of host pathogen interactions: how Mycobacterium tuberculosis and the macrophage adapt to one another. , 2006, Microbes and infection.

[47]  Philip D. Butcher,et al.  Probing Host Pathogen Cross-Talk by Transcriptional Profiling of Both Mycobacterium tuberculosis and Infected Human Dendritic Cells and Macrophages , 2008, PloS one.

[48]  R. Appelberg Macrophage nutriprive antimicrobial mechanisms , 2006, Journal of leukocyte biology.

[49]  Joeli Marrero,et al.  Glucose Phosphorylation Is Required for Mycobacterium tuberculosis Persistence in Mice , 2013, PLoS pathogens.

[50]  E. Rubin,et al.  Feast or famine: the host–pathogen battle over amino acids , 2013, Cellular microbiology.

[51]  James C. Sacchettini,et al.  Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase , 2000, Nature.

[52]  A. Genovesio,et al.  High Content Phenotypic Cell-Based Visual Screen Identifies Mycobacterium tuberculosis Acyltrehalose-Containing Glycolipids Involved in Phagosome Remodeling , 2010, PLoS pathogens.

[53]  Stefan Niemann,et al.  Functional Genetic Diversity among Mycobacterium tuberculosis Complex Clinical Isolates: Delineation of Conserved Core and Lineage-Specific Transcriptomes during Intracellular Survival , 2010, PLoS pathogens.

[54]  V. Deretic,et al.  Effects of cytokines on mycobacterial phagosome maturation. , 1998, Journal of cell science.

[55]  R. Brosch,et al.  Disruption of the ESX‐5 system of Mycobacterium tuberculosis causes loss of PPE protein secretion, reduction of cell wall integrity and strong attenuation , 2012, Molecular microbiology.

[56]  P. V. van Helden,et al.  Regulation of nitrogen metabolism in Mycobacterium tuberculosis: A comparison with mechanisms in Corynebacterium glutamicum and Streptomyces coelicolor , 2008, IUBMB life.

[57]  I. Beacham,et al.  Cloning and molecular analysis of the Salmonella enterica ansP gene, encoding an L-asparagine permease. , 1995, Microbiology.

[58]  D. Schnappinger,et al.  Central carbon metabolism in Mycobacterium tuberculosis: an unexpected frontier. , 2011, Trends in microbiology.

[59]  Peter J. Peters,et al.  M. tuberculosis and M. leprae Translocate from the Phagolysosome to the Cytosol in Myeloid Cells , 2007, Cell.

[60]  M. Horwitz,et al.  Glutamine Synthetase GlnA1 Is Essential for Growth of Mycobacterium tuberculosis in Human THP-1 Macrophages and Guinea Pigs , 2003, Infection and Immunity.

[61]  R. H. Lyon,et al.  Utilization of Amino Acids During Growth of Mycobacterium tuberculosis in Rotary Cultures , 1970, Infection and immunity.

[62]  Diogo F. Veiga,et al.  Linking the Transcriptional Profiles and the Physiological States of Mycobacterium tuberculosis during an Extended Intracellular Infection , 2012, PLoS pathogens.

[63]  Carolyn R Bertozzi,et al.  Cholesterol catabolism by Mycobacterium tuberculosis requires transcriptional and metabolic adaptations. , 2012, Chemistry & biology.

[64]  E. Verrina,et al.  Free amino acids in plasma, red blood cells, polymorphonuclear leukocytes, and muscle in normal and uraemic children. , 2002, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[65]  Kevin W Eliceiri,et al.  NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.

[66]  R. H. Lyon,et al.  Effect of l-Asparagine on Growth of Mycobacterium tuberculosis and on Utilization of Other Amino Acids , 1974, Journal of bacteriology.

[67]  K. Stingl,et al.  Coupled Amino Acid Deamidase-Transport Systems Essential for Helicobacter pylori Colonization , 2010, Infection and Immunity.

[68]  Jason T. Huff,et al.  Expression of the ompATb operon accelerates ammonia secretion and adaptation of Mycobacterium tuberculosis to acidic environments , 2011, Molecular microbiology.