Large Scale Computational Modelling of Cellular Biosystems
暂无分享,去创建一个
[1] Barbara Chapman,et al. Using OpenMP - portable shared memory parallel programming , 2007, Scientific and engineering computation.
[2] M. E. Muller,et al. A Note on the Generation of Random Normal Deviates , 1958 .
[3] Michael Mascagni,et al. SPRNG: A Scalable Library for Pseudorandom Number Generation , 1999, PP.
[4] M. Chaplain,et al. Two-dimensional models of tumour angiogenesis and anti-angiogenesis strategies. , 1997, IMA journal of mathematics applied in medicine and biology.
[5] Michael S. Warren,et al. A Fast Tree Code for Many-Body Problems , 1999 .
[6] James Demmel,et al. Minimizing communication in sparse matrix solvers , 2009, Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis.
[7] K. Rejniak. A single-cell approach in modeling the dynamics of tumor microregions. , 2005, Mathematical biosciences and engineering : MBE.
[8] A. Anderson,et al. A Hybrid Multiscale Model of Solid Tumour Growth and Invasion: Evolution and the Microenvironment , 2007 .
[9] V. Springel. The Cosmological simulation code GADGET-2 , 2005, astro-ph/0505010.
[10] S. McDougall,et al. Mathematical modelling of flow through vascular networks: Implications for tumour-induced angiogenesis and chemotherapy strategies , 2002, Bulletin of mathematical biology.
[11] Michele Weiland,et al. Chapel , Fortress and X10 : novel languages for HPC , 2007 .
[12] James Demmel,et al. Communication Avoiding Gaussian elimination , 2008, 2008 SC - International Conference for High Performance Computing, Networking, Storage and Analysis.
[13] Zuzanna Szymańska,et al. Mathematical modeling of heat shock protein synthesis in response to temperature change. , 2009, Journal of theoretical biology.
[14] Allen D. Malony,et al. The Tau Parallel Performance System , 2006, Int. J. High Perform. Comput. Appl..
[15] Maciej Cytowski,et al. Astronomical Period Searching on the Cell Broadband Engine , 2009, PPAM.
[16] H M Byrne,et al. Mathematical models for tumour angiogenesis: numerical simulations and nonlinear wave solutions. , 1995, Bulletin of mathematical biology.
[17] Alexander R. A. Anderson,et al. Mathematical modelling of cancer cell invasion of tissue , 2008, Math. Comput. Model..
[18] J. Xu. OpenCL – The Open Standard for Parallel Programming of Heterogeneous Systems , 2009 .
[19] H M Byrne,et al. Growth of nonnecrotic tumors in the presence and absence of inhibitors. , 1995, Mathematical biosciences.
[20] Andreas Deutsch,et al. Prediction of traveling front behavior in a lattice-gas cellular automaton model for tumor invasion , 2010, Comput. Math. Appl..
[21] M. Chaplain,et al. Free boundary value problems associated with the growth and development of multicellular spheroids , 1997, European Journal of Applied Mathematics.
[22] Helen M Byrne,et al. A mechanical model of tumor encapsulation and transcapsular spread. , 2002, Mathematical biosciences.
[23] H. Frieboes,et al. Nonlinear modelling of cancer: bridging the gap between cells and tumours , 2010, Nonlinearity.
[24] Robert D. Falgout,et al. Scaling Hypre's Multigrid Solvers to 100, 000 Cores , 2011, High-Performance Scientific Computing.
[25] H. Greenspan. Models for the Growth of a Solid Tumor by Diffusion , 1972 .
[26] John S. Lowengrub,et al. A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth , 2008, J. Sci. Comput..
[27] N. Britton,et al. Stochastic simulation of benign avascular tumour growth using the Potts model , 1999 .
[28] R.H. Dennard,et al. Design Of Ion-implanted MOSFET's with Very Small Physical Dimensions , 1974, Proceedings of the IEEE.
[29] M. Loeffler,et al. Modeling the effect of deregulated proliferation and apoptosis on the growth dynamics of epithelial cell populations in vitro. , 2005, Biophysical journal.
[30] J. Folkman,et al. SELF-REGULATION OF GROWTH IN THREE DIMENSIONS , 1973, The Journal of experimental medicine.
[31] J. King,et al. Mathematical modelling of avascular-tumour growth. II: Modelling growth saturation. , 1999, IMA journal of mathematics applied in medicine and biology.
[32] H. Othmer,et al. A HYBRID MODEL FOR TUMOR SPHEROID GROWTH IN VITRO I: THEORETICAL DEVELOPMENT AND EARLY RESULTS , 2007 .
[33] Dariusz Plewczynski,et al. 3D-Hit: fast structural comparison of proteins on multicore architectures , 2014, Optim. Lett..
[34] Vivek Sarkar,et al. Software challenges in extreme scale systems , 2009 .
[35] J. Davenport. Editor , 1960 .
[36] John Shalf,et al. The International Exascale Software Project roadmap , 2011, Int. J. High Perform. Comput. Appl..
[37] J. Monaghan. Smoothed particle hydrodynamics , 2005 .
[38] R. A. ANDERSONa,et al. Mathematical Modelling of Tumour Invasion and Metastasis , 2022 .
[39] A. Anderson,et al. A Computational Study of the Development of Epithelial Acini: II. Necessary Conditions for Structure and Lumen Stability , 2008, Bulletin of mathematical biology.
[40] C. S. Chen,et al. Demonstration of mechanical connections between integrins, cytoskeletal filaments, and nucleoplasm that stabilize nuclear structure. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[41] M. Chaplain,et al. Mathematical modelling of cancer cell invasion of tissue , 2005, Math. Comput. Model..
[42] Mark A J Chaplain,et al. Computational modeling of single-cell migration: the leading role of extracellular matrix fibers. , 2012, Biophysical journal.
[43] S. McDougall,et al. Multiscale modelling and nonlinear simulation of vascular tumour growth , 2009, Journal of mathematical biology.
[44] James Demmel,et al. Communication-optimal Parallel and Sequential QR and LU Factorizations , 2008, SIAM J. Sci. Comput..
[45] ski,et al. Performance analysis of parallel applications on modern multithreaded processor architectures , 2013 .
[46] J. CARRIERt,et al. A FAST ADAPTIVE MULTIPOLE ALGORITHM FOR PARTICLE SIMULATIONS * , 2022 .
[47] K. Rejniak,et al. Computational and Mathematical Methods in Medicine a Single Cell-based Model of the Ductal Tumour Microarchitecture a Single Cell-based Model of the Ductal Tumour Microarchitecture , 2022 .
[48] Ignacio Ramis-Conde,et al. Multi-scale modelling of cancer cell intravasation: the role of cadherins in metastasis , 2009, Physical biology.
[49] P. May,et al. Cell cycle control and cancer. , 2000, Pathologie-biologie.
[50] John Dubinski,et al. GOTPM: A Parallel Hybrid Particle-Mesh Treecode , 2004 .
[51] Gerard V. Kopcsay,et al. Packaging the IBM Blue Gene/Q supercomputer , 2013, IBM J. Res. Dev..
[52] Yuefan Deng,et al. An efficient parallel implementation of the smooth particle mesh Ewald method for molecular dynamics simulations , 2007, Comput. Phys. Commun..
[53] H M Byrne,et al. Growth of necrotic tumors in the presence and absence of inhibitors. , 1996, Mathematical biosciences.
[54] Maciej Cytowski,et al. Large-Scale Parallel Simulations of 3D Cell Colony Dynamics , 2014, Computing in Science & Engineering.
[55] T. Jackson,et al. Incorporating spatial dependence into a multicellular tumor spheroid growth model , 2005 .
[56] Maciej Cytowski,et al. Towards Autotuning of OpenMP Applications on Multicore Architectures , 2014, ArXiv.
[57] Maciej Cytowski,et al. Analysis of Gravitational Wave Signals on Heterogeneous Architectures , 2010, PARA.
[58] M. Dewhirst,et al. Tumor hypoxia adversely affects the prognosis of carcinoma of the head and neck. , 1997, International journal of radiation oncology, biology, physics.
[59] D. Balding,et al. A mathematical model of tumour-induced capillary growth. , 1985, Journal of theoretical biology.
[60] H. Greenspan. On the growth and stability of cell cultures and solid tumors. , 1976, Journal of theoretical biology.
[61] M. Chaplain,et al. Continuous and discrete mathematical models of tumor-induced angiogenesis , 1998, Bulletin of mathematical biology.
[62] Anna Gambin,et al. Modelling the efficacy of hyperthermia treatment , 2012, Journal of The Royal Society Interface.
[63] Vipin Kumar,et al. Scalable parallel formulations of the barnes-hut method for n-body simulations , 1994, Supercomputing '94.
[64] S Torquato,et al. Cellular automaton of idealized brain tumor growth dynamics. , 2000, Bio Systems.
[65] K. Rejniak. An immersed boundary framework for modelling the growth of individual cells: an application to the early tumour development. , 2007, Journal of theoretical biology.
[66] Dirk Drasdo,et al. On Selected Individual-based Approaches to the Dynamics in Multicellular Systems , 2003 .
[67] E. T. Gawlinski,et al. Acid-mediated tumor invasion: a multidisciplinary study. , 2006, Cancer research.
[68] A. Anderson,et al. Front Instabilities and Invasiveness of Simulated Avascular Tumors , 2009, Bulletin of mathematical biology.
[69] Martin Hopkins,et al. Synergistic Processing in Cell's Multicore Architecture , 2006, IEEE Micro.
[70] Glazier,et al. Simulation of the differential adhesion driven rearrangement of biological cells. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[71] Torsten Hoefler,et al. Mpi on Millions of Cores * , 2022 .
[72] L. Preziosi,et al. ON THE CLOSURE OF MASS BALANCE MODELS FOR TUMOR GROWTH , 2002 .
[73] B Ribba,et al. A multiscale mathematical model of avascular tumor growth to investigate the therapeutic benefit of anti-invasive agents. , 2006, Journal of theoretical biology.
[74] E. T. Gawlinski,et al. A Cellular Automaton Model of Early Tumor Growth and Invasion: The Effects of Native Tissue Vascularity and Increased Anaerobic Tumor Metabolism , 2001 .
[75] Maciej Cytowski,et al. Increasing the Efficiency of the DaCS Programming Model for Heterogeneous Systems , 2011, PPAM.
[76] A. Anderson,et al. A Computational Study of the Development of Epithelial Acini: I. Sufficient Conditions for the Formation of a Hollow Structure , 2008, Bulletin of mathematical biology.
[77] A. Anderson,et al. Stability analysis of a hybrid cellular automaton model of cell colony growth. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[78] F. MacKintosh,et al. Scanning probe-based frequency-dependent microrheology of polymer gels and biological cells. , 2000, Physical review letters.
[79] D. Drasdo,et al. A single-cell-based model of tumor growth in vitro: monolayers and spheroids , 2005, Physical biology.
[80] Andreas Deutsch,et al. Lattice-Gas Cellular Automaton Modeling of Emergent Behavior in Interacting Cell Populations , 2010, Simulating Complex Systems by Cellular Automata.
[81] Maciej Cytowski,et al. Nautilus - A Testbed for Green Scientific Computing , 2009, ERCIM News.
[82] Maciej Cytowski,et al. A 2-D Large-scale Individual-based model of solid tumour growth , 2013 .
[83] Piet Hut,et al. A hierarchical O(N log N) force-calculation algorithm , 1986, Nature.
[84] K. Edvardsen,et al. Role of extracellular matrix in tumor invasion: migration of glioma cells along fibronectin-positive mesenchymal cell processes. , 1998, Neurosurgery.
[85] S. McDougall,et al. Mathematical modelling of dynamic adaptive tumour-induced angiogenesis: clinical implications and therapeutic targeting strategies. , 2006, Journal of theoretical biology.
[86] A. Anderson,et al. A hybrid cellular automaton model of clonal evolution in cancer: the emergence of the glycolytic phenotype. , 2008, Journal of theoretical biology.
[87] A. Anderson,et al. A hybrid mathematical model of solid tumour invasion: the importance of cell adhesion. , 2005, Mathematical medicine and biology : a journal of the IMA.