The semi-automated classification of sedimentary organic matter in palynological preparations

The capture, analysis and classification of sedimentary organic matter in palynological preparations have been semi-automated. First, the morphological and textural discriminatory features used in classification schemes are measured using a computer-controlled stage and a digital camera mounted on a microscope in combination with Halcon image analysis algorithms. Second, the Exhaustive CHi-square Automatic Interaction Detector classification tree algorithm is applied to all feature measurements to establish their saliency as classification discriminators. Thirdly, the results of the classification tree algorithm are used to determine the inputs used by the actual classifier, which consists of a series of artificial neural networks (ANNs). The Gamma test (GT) is introduced as a tool to help facilitate the best use of limited data and to ensure that the ANNs are not over trained. The results show that the system developed is able to achieve an average correct classification rate of 87%. This is encouraging enough to prompt further research that could result in a commercially viable system. In the future, work will concentrate on refining the image capture component of the system and increasing the size of those databases that have been shown both empirically and by the GT to be too small to facilitate the construction of accurate classifiers.

[1]  I. D. Wilson,et al.  Predicting the geo-temporal variations of crime and disorder , 2003 .

[2]  H. D. Buf,et al.  Automatic diatom identification , 2002 .

[3]  Loic Le Dean,et al.  Application of a digital pattern recognition system to Dinophysis acuminata and D. sacculus complexes , 1996 .

[4]  Nenad Koncar,et al.  A note on the Gamma test , 1997, Neural Computing & Applications.

[5]  Richard V. Tyson,et al.  Palynological Kerogen Classification , 1995 .

[6]  A.W.G. Duller,et al.  A new approach to automated pollen analysis , 2000 .

[7]  Steve Juggins,et al.  ADIAC imaging techniques and databases , 2002 .

[8]  Richard V. Tyson,et al.  Sedimentary Organic Matter: Organic facies and palynofacies , 1994 .

[9]  M. Boulter,et al.  Sedimentation of organic particles: An approach to a standard terminology for palynodebris , 1994 .

[10]  Lynne Boddy,et al.  A comparison of some neural and non-neural methods for identification of phytoplankton from flow cytometry data , 1996, Comput. Appl. Biosci..

[11]  Eliot Fried,et al.  The evolution equation for a disclination in a nematic liquid crystal , 2002, Proceedings of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.

[12]  Alfred Traverse,et al.  Sedimentation of organic particles: Frontmatter , 1994 .

[13]  H. W. Balfoort,et al.  Automatic identification of algae: neural network analysis of flow cytometric data , 1992 .

[14]  A. J. Jones,et al.  A proof of the Gamma test , 2002, Proceedings of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.

[15]  G. V. Kass An Exploratory Technique for Investigating Large Quantities of Categorical Data , 1980 .

[16]  G. Cristóbal,et al.  Automatic slide scanning , 2002 .

[17]  David Biggs,et al.  A method of choosing multiway partitions for classification and decision trees , 1991 .

[18]  Andrew Francis Weller,et al.  The semi-automated classification of sedimentary organic matter and dinoflagellate cysts in palynological preparations , 2004 .

[19]  M J Dabros,et al.  An Automated Microscope System For Image Analysis in Palynology and Micropaleontology , 1986 .