1 Title : Post-hoc Analysis for Detecting Individual Rare Variant Risk Associations using Probit Regression Bayesian Variable Selection Methods in Case-Control Sequencing Studies Running Title : Bayesian Probit Rare Variant Analysis
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A. Whittemore | D. Schaid | J. Carpten | R. Eeles | Z. Kote-Jarai | J. Schleutker | J. Stanford | E. Ostrander | S. Thibodeau | C. Maier | K. Cooney | W. Foulkes | S. McDonnell | E. Lange | Jianfeng Xu | W. Catalona | G. Cancel-Tassin | O. Cussenot | F. Wiklund | W. Isaacs | N. Larson | C. Hsieh | J. Bailey-Wilson | C. Teerlink | C. Klein | I. Powell | R. MacInnis | D. Mandal | T. Olson | L. C. Albright | Graham | Giles | J. Michael | Ackerman
[1] Kathryn Roeder,et al. Testing for an Unusual Distribution of Rare Variants , 2011, PLoS genetics.
[2] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[3] W. K. Hastings,et al. Monte Carlo Sampling Methods Using Markov Chains and Their Applications , 1970 .
[4] S. Leal,et al. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. , 2008, American journal of human genetics.
[5] Meili Baragatti,et al. Bayesian Variable Selection for Probit Mixed Models Applied to Gene Selection , 2011, 1101.4577.
[6] G. Casella,et al. Objective Bayes model selection in probit models , 2012, Statistics in medicine.
[7] M. Rieder,et al. Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies. , 2012, American journal of human genetics.
[8] Brian S Caffo,et al. Spatial Bayesian Variable Selection Models on Functional Magnetic Resonance Imaging Time-Series Data. , 2014, Bayesian analysis.
[9] J. Pritchard. Are rare variants responsible for susceptibility to complex diseases? , 2001, American journal of human genetics.
[10] Cheng Cheng,et al. A New System Identification Approach to Identify Genetic Variants in Sequencing Studies for a Binary Phenotype , 2014, Human Heredity.
[11] Arnold Zellner,et al. Applications of Bayesian Analysis in Econometrics , 1983 .
[12] Yang Ai-jun,et al. Bayesian variable selection for disease classification using gene expression data , 2010 .
[13] D. Dunson,et al. Bayesian Variable Selection via Particle Stochastic Search. , 2011, Statistics & probability letters.
[14] Alicia A. Johnson,et al. Component-Wise Markov Chain Monte Carlo: Uniform and Geometric Ergodicity under Mixing and Composition , 2009, 0903.0664.
[15] Claudio J. Verzilli,et al. An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People , 2012, Science.
[16] S. Chib,et al. Bayesian analysis of binary and polychotomous response data , 1993 .
[17] Adrian F. M. Smith,et al. Bayesian Analysis of Constrained Parameter and Truncated Data Problems , 1991 .
[18] Benjamin A. Logsdon,et al. A Variational Bayes Discrete Mixture Test for Rare Variant Association , 2014, Genetic epidemiology.
[19] Aki Vehtari,et al. Finite Adaptation and Multistep Moves in the Metropolis-Hastings Algorithm for Variable Selection in Genome-Wide Association Analysis , 2012, PloS one.
[20] V. Bansal,et al. Statistical analysis strategies for association studies involving rare variants , 2010, Nature Reviews Genetics.
[21] Marina Vannucci,et al. Gene selection: a Bayesian variable selection approach , 2003, Bioinform..
[22] Jun S. Liu. Peskun's theorem and a modified discrete-state Gibbs sampler , 1996 .
[23] Minoru Kanehisa,et al. The KEGG database. , 2002, Novartis Foundation symposium.
[24] R. O’Hara,et al. A review of Bayesian variable selection methods: what, how and which , 2009 .
[25] Chunfa Huang,et al. Lipid Metabolism, Apoptosis and Cancer Therapy , 2015, International journal of molecular sciences.
[26] D. Goldstein,et al. Uncovering the roles of rare variants in common disease through whole-genome sequencing , 2010, Nature Reviews Genetics.
[27] Claudia Hemmelmann,et al. Statistical analysis of rare sequence variants: an overview of collapsing methods , 2011, Genetic epidemiology.
[28] Jun S. Liu,et al. The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem , 1994 .
[29] M. Xiong,et al. Bayesian Detection of Causal Rare Variants under Posterior Consistency , 2013, PloS one.
[30] N. Morton. Genetic epidemiology , 1997, International Journal of Obesity.
[31] David V Conti,et al. Incorporating model uncertainty in detecting rare variants: the Bayesian risk index , 2011, Genetic epidemiology.