Nitrogen-assimilating enzymes in land plants and algae: phylogenic and physiological perspectives.

An important biochemical feature of autotrophs, land plants and algae, is their incorporation of inorganic nitrogen, nitrate and ammonium, into the carbon skeleton. Nitrate and ammonium are converted into glutamine and glutamate to produce organic nitrogen compounds, for example proteins and nucleic acids. Ammonium is not only a preferred nitrogen source but also a key metabolite, situated at the junction between carbon metabolism and nitrogen assimilation, because nitrogen compounds can choose an alternative pathway according to the stages of their growth and environmental conditions. The enzymes involved in the reactions are nitrate reductase (EC 1.6.6.1-2), nitrite reductase (EC 1.7.7.1), glutamine synthetase (EC 6.3.1.2), glutamate synthase (EC 1.4.1.13-14, 1.4.7.1), glutamate dehydrogenase (EC 1.4.1.2-4), aspartate aminotransferase (EC 2.6.1.1), asparagine synthase (EC 6.3.5.4), and phosphoenolpyruvate carboxylase (EC 4.1.1.31). Many of these enzymes exist in multiple forms in different subcellular compartments within different organs and tissues, and play sometimes overlapping and sometimes distinctive roles. Here, we summarize the biochemical characteristics and the physiological roles of these enzymes. We also analyse the molecular evolution of glutamine synthetase, glutamate synthase and glutamate dehydrogenase, and discuss the evolutionary relationships of these three enzymes.

[1]  F. Restivo,et al.  Isolation and characterization of two cDNA clones encoding for glutamate dehydrogenase in Nicotiana plumbaginifolia. , 1999, Plant & cell physiology.

[2]  R. Schmidt,et al.  Alternative splicing of a precursor-mRNA encoded by the Chlorella sorokiniana NADP-specific glutamate dehydrogenase gene yields mRNAs for precursor proteins of isozyme subunits with different ammonium affinities , 1998, Plant Molecular Biology.

[3]  P. Forterre,et al.  Evolution of glutamate dehydrogenase genes: Evidence for two paralogous protein families and unusual branching patterns of the archaebacteria in the universal tree of life , 1993, Journal of Molecular Evolution.

[4]  Carol MacKintosh,et al.  Cytosolic glutamine synthetase and not nitrate reductase from the green alga Chlamydomonas reinhardtii is phosphorylated and binds 14-3-3 proteins , 2001, Planta.

[5]  C. MacKintosh,et al.  Regulation of cytosolic enzymes in primary metabolism by reversible protein phosphorylation. , 1998, Current opinion in plant biology.

[6]  A. Fischer,et al.  Nitrogen Metabolism in Senescing Leaves , 1994 .

[7]  W. Campbell NITRATE REDUCTASE STRUCTURE, FUNCTION AND REGULATION: Bridging the Gap between Biochemistry and Physiology. , 1999, Annual review of plant physiology and plant molecular biology.

[8]  G. Coruzzi,et al.  Photorespiration and light act in concert to regulate the expression of the nuclear gene for chloroplast glutamine synthetase. , 1989, The Plant cell.

[9]  C. Silflow,et al.  Isolation and Characterization of Glutamine Synthetase Genes in Chlamydomonas reinhardtii , 1996, Plant physiology.

[10]  N. Bascomb,et al.  Purification and Partial Kinetic and Physical Characterization of Two Chloroplast-Localized NADP-Specific Glutamate Dehydrogenase Isoenzymes and Their Preferential Accumulation in Chlorella sorokiniana Cells Cultured at Low or High Ammonium Levels. , 1987, Plant physiology.

[11]  G. Coruzzi,et al.  Molecular-genetic dissection of ammonium assimilation in Arabidopsis thaliana , 1997 .

[12]  S. Osawa,et al.  Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[13]  S. Higuchi,et al.  Properties of glutamate dehydrogenase and its involvement in alanine production in a hyperthermophilic archaeon, Thermococcus profundus. , 1995, Journal of biochemistry.

[14]  T. Yamaya,et al.  Organ and cellular localization of asparagine synthetase in rice plants. , 2000, Plant & cell physiology.

[15]  M. Hodges,et al.  Enzyme redundancy and the importance of 2-oxoglutarate in higher plant ammonium assimilation. , 2000, Plant physiology.

[16]  G M Coruzzi,et al.  Carbon and amino acids reciprocally modulate the expression of glutamine synthetase in Arabidopsis. , 1999, Plant physiology.

[17]  George E. Fox,et al.  Comparative Cataloging of 16S Ribosomal Ribonucleic Acid: Molecular Approach to Procaryotic Systematics , 1977 .

[18]  Y. Yagi,et al.  BRYOPSIS MAXIMA (CHLOROPHYTA) GLUTAMATE DEHYDROGENASE: MULTIPLE GENES AND ISOZYMES , 1999 .

[19]  J. Lake,et al.  Tracing origins with molecular sequences: metazoan and eukaryotic beginnings. , 1991, Trends in biochemical sciences.

[20]  S. Rothstein,et al.  Regulation by light and metabolites of ferredoxin-dependent glutamate synthase in maize. , 2001, Physiologia plantarum.

[21]  J. Schjoerring,et al.  Post-translational regulation of cytosolic glutamine synthetase by reversible phosphorylation and 14-3-3 protein interaction. , 2000, The Plant journal : for cell and molecular biology.

[22]  H. Kronzucker,et al.  Compartmentation and flux characteristics of ammonium in spruce , 1995, Planta.

[23]  J. Felsenstein CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[24]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[25]  S. Sivasankar,et al.  Nitrate assimilation in higher plants: the effects of metabolites and light , 1996 .

[26]  Y. Meyer,et al.  The Presence of GSI-Like Genes in Higher Plants: Support for the Paralogous Evolution of GSI and GSII Genes , 2000, Journal of Molecular Evolution.

[27]  W. Kaiser,et al.  Rapid Modulation of Spinach Leaf Nitrate Reductase Activity by Photosynthesis : I. Modulation in Vivo by CO(2) Availability. , 1991, Plant physiology.

[28]  A. Laere,et al.  Ammonium and amino acid metabolism in excised leaves of wheat (Triticum aestivum) senescing in the dark , 1992 .

[29]  G. Coruzzi,et al.  Arabidopsis gls Mutants and Distinct Fd-GOGAT Genes: Implications for Photorespiration and Primary Nitrogen Assimilation , 1998, Plant Cell.

[30]  James A. Lake,et al.  Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences , 1988, Nature.

[31]  J. Wiskich,et al.  An NADP-glutamate dehydrogenase from the green alga Bryopsis maxima. Purification and properties. , 1997, Plant & cell physiology.

[32]  W. Campbell Structure and function of eukaryotic NAD(P)H:nitrate reductase , 2001, Cellular and Molecular Life Sciences CMLS.

[33]  J. Ortega,et al.  Constitutive overexpression of cytosolic glutamine synthetase (GS1) gene in transgenic alfalfa demonstrates that GS1 may be regulated at the level of RNA stability and protein turnover. , 2001, Plant physiology.

[34]  M. Okada,et al.  Physiological adaptations of glutamate dehydrogenase isozyme activities and other nitrogen-assimilating enzymes in the macroalga Bryopsis maxima , 2001 .

[35]  B. Hirel,et al.  Immunolocalization of glutamine synthetase in senescing tobacco (Nicotiana tabacum L.) leaves suggests that ammonia assimilation is progressively shifted to the mesophyll cytosol , 2000, Planta.

[36]  A. Halpern,et al.  Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. , 2000, Molecular biology and evolution.

[37]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.