Insufficient DNA methylation affects healthy aging and promotes age-related health problems

DNA methylation plays an integral role in development and aging through epigenetic regulation of genome function. DNA methyltransferase 1 (Dnmt1) is the most prevalent DNA methyltransferase that maintains genomic methylation stability. To further elucidate the function of Dnmt1 in aging and age-related diseases, we exploited the Dnmt1+/− mouse model to investigate how Dnmt1 haploinsufficiency impacts the aging process by assessing the changes of several major aging phenotypes. We confirmed that Dnmt1 haploinsufficiency indeed decreases DNA methylation as a result of reduced Dnmt1 expression. To assess the effect of Dnmt1 haploinsufficiency on general body composition, we performed dual-energy X-ray absorptiometry analysis and showed that reduced Dnmt1 activity decreased bone mineral density and body weight, but with no significant impact on mortality or body fat content. Using behavioral tests, we demonstrated that Dnmt1 haploinsufficiency impairs learning and memory functions in an age-dependent manner. Taken together, our findings point to the interesting likelihood that reduced genomic methylation activity adversely affects the healthy aging process without altering survival and mortality. Our studies demonstrated that cognitive functions of the central nervous system are modulated by Dnmt1 activity and genomic methylation, highlighting the significance of the original epigenetic hypothesis underlying memory coding and function.

[1]  Tatjana Buklijas,et al.  Epigenetic mechanisms that underpin metabolic and cardiovascular diseases , 2009, Nature Reviews Endocrinology.

[2]  K. Robertson DNA methylation and human disease , 2005, Nature Reviews Genetics.

[3]  T. Ekström,et al.  Impact of inflammation on epigenetic DNA methylation – a novel risk factor for cardiovascular disease? , 2007, Journal of internal medicine.

[4]  P. Bertolucci,et al.  Promoter methylation analysis of SIRT3, SMARCA5, HTERT and CDH1 genes in aging and Alzheimer's disease. , 2008, Journal of Alzheimer's disease : JAD.

[5]  Joel Schwartz,et al.  Decline in genomic DNA methylation through aging in a cohort of elderly subjects , 2009, Mechanisms of Ageing and Development.

[6]  Manel Esteller,et al.  Epigenetics and aging: the targets and the marks. , 2007, Trends in genetics : TIG.

[7]  R. Jaenisch,et al.  DNA Hypomethylation Perturbs the Function and Survival of CNS Neurons in Postnatal Animals , 2001, The Journal of Neuroscience.

[8]  J. Liepnieks,et al.  Aging in heterozygous Dnmt1-deficient mice: effects on survival, the DNA methylation genes, and the development of amyloidosis. , 2006, The journals of gerontology. Series A, Biological sciences and medical sciences.

[9]  Rudolf Jaenisch,et al.  Targeted mutation of the DNA methyltransferase gene results in embryonic lethality , 1992, Cell.

[10]  Cheryl L Grady,et al.  Changes in memory processing with age , 2000, Current Opinion in Neurobiology.

[11]  T. Groen,et al.  Old rats remember old tricks; memories of the water maze persist for 12 months , 2002, Behavioural Brain Research.

[12]  T. Groen,et al.  DNA methylation impacts on learning and memory in aging , 2009, Neurobiology of Aging.

[13]  R. Jaenisch,et al.  Induction of Tumors in Mice by Genomic Hypomethylation , 2003, Science.

[14]  T. Tollefsbol,et al.  Telomerase inhibition by retinoids precedes cytodifferentiation of leukemia cells and may contribute to terminal differentiation. , 2004, Molecular cancer therapeutics.

[15]  Guoping Fan,et al.  Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons , 2010, Nature Neuroscience.

[16]  Sun-Chong Wang,et al.  Age-Specific Epigenetic Drift in Late-Onset Alzheimer's Disease , 2008, PloS one.

[17]  T. Nagy,et al.  Precision and accuracy of dual-energy X-ray absorptiometry for determining in vivo body composition of mice. , 2000, Obesity research.

[18]  H. Tanila,et al.  Effects of fimbria-fornix lesion and amyloid pathology on spatial learning and memory in transgenic APP+PS1 mice , 2002, Behavioural Brain Research.

[19]  T. Nagy,et al.  Cancer progression in the transgenic adenocarcinoma of mouse prostate mouse is related to energy balance, body mass, and body composition, but not food intake. , 2007, Cancer research.

[20]  J. Reul,et al.  Epigenetic mechanisms in the dentate gyrus act as a molecular switch in hippocampus-associated memory formation , 2009, Epigenetics.

[21]  Richard F. Thompson,et al.  Reversal of age-related learning deficits and brain oxidative stress in mice with superoxide dismutase/catalase mimetics , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Wendy Dean,et al.  Dynamic reprogramming of DNA methylation in the early mouse embryo. , 2002, Developmental biology.

[23]  S. Hanash,et al.  Unexpected effects of a heterozygous dnmt1 null mutation on age-dependent DNA hypomethylation and autoimmunity. , 2001, The journals of gerontology. Series A, Biological sciences and medical sciences.

[24]  J. Craigon,et al.  DNA methylation, insulin resistance, and blood pressure in offspring determined by maternal periconceptional B vitamin and methionine status , 2007, Proceedings of the National Academy of Sciences.

[25]  Joseph Rogers,et al.  Epigenetic changes in Alzheimer's disease: Decrements in DNA methylation , 2010, Neurobiology of Aging.

[26]  R. Holliday Is there an epigenetic component in long-term memory? , 1999, Journal of theoretical biology.

[27]  P. C. Rath,et al.  Methylation of repetitive DNA sequences in the brain during aging of the rat , 1989, FEBS letters.

[28]  L. Mays-Hoopes,et al.  Decreased methylation of the major mouse long interspersed repeated DNA during aging and in myeloma cells. , 1986, Developmental genetics.

[29]  K. Inano,et al.  Maintenance-type DNA methyltransferase is highly expressed in post-mitotic neurons and localized in the cytoplasmic compartment. , 2000, Journal of biochemistry.

[30]  D. Kalu,et al.  Age-related changes in bone mineral content and density in intact male F344 rats. , 2002, Bone.

[31]  Liguo Song,et al.  Specific method for the determination of genomic DNA methylation by liquid chromatography-electrospray ionization tandem mass spectrometry. , 2005, Analytical chemistry.

[32]  D. Schlessinger,et al.  Does functional depletion of stem cells drive aging? , 2001, Mechanisms of Ageing and Development.

[33]  D. Goldman,et al.  DNA mismatch repair and DNA methylation in adult brain neurons , 1996, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[34]  D. Haber,et al.  DNA Methyltransferases Dnmt3a and Dnmt3b Are Essential for De Novo Methylation and Mammalian Development , 1999, Cell.

[35]  G. Fan,et al.  Epigenetic Regulation of Neural Gene Expression and Neuronal Function , 2007, Pediatric Research.

[36]  V. L. Wilson,et al.  DNA methylation decreases in aging but not in immortal cells. , 1983, Science.

[37]  R. Jaenisch,et al.  DNA Methylation in the Human Cerebral Cortex Is Dynamically Regulated throughout the Life Span and Involves Differentiated Neurons , 2007, PloS one.

[38]  T. Ono,et al.  Expression of DNA methyltransferase gene in mature and immature neurons as well as proliferating cells in mice. , 1994, Differentiation; research in biological diversity.

[39]  T. Tollefsbol,et al.  Transcriptional control of the DNA methyltransferases is altered in aging and neoplastically-transformed human fibroblasts , 2003, Molecular and Cellular Biochemistry.

[40]  E. Lein,et al.  Mice lacking methyl-CpG binding protein 1 have deficits in adult neurogenesis and hippocampal function , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Lennart Opitz,et al.  Altered Histone Acetylation Is Associated with Age-Dependent Memory Impairment in Mice , 2010, Science.

[42]  B. Shukitt-Hale,et al.  Effect of age on the radial arm water maze—a test of spatial learning and memory , 2004, Neurobiology of Aging.

[43]  C. Barnes Memory deficits associated with senescence: a neurophysiological and behavioral study in the rat. , 1979, Journal of comparative and physiological psychology.

[44]  M. Gallagher,et al.  The use of animal models to study the effects of aging on cognition. , 1997, Annual review of psychology.

[45]  Andrew P Feinberg,et al.  An integrated epigenetic and genetic approach to common human disease. , 2004, Trends in genetics : TIG.