Histone deacetylase 6-mediated selective autophagy regulates COPD-associated cilia dysfunction.

Chronic obstructive pulmonary disease (COPD) involves aberrant airway inflammatory responses to cigarette smoke (CS) that are associated with epithelial cell dysfunction, cilia shortening, and mucociliary clearance disruption. Exposure to CS reduced cilia length and induced autophagy in vivo and in differentiated mouse tracheal epithelial cells (MTECs). Autophagy-impaired (Becn1+/- or Map1lc3B-/-) mice and MTECs resisted CS-induced cilia shortening. Furthermore, CS increased the autophagic turnover of ciliary proteins, indicating that autophagy may regulate cilia homeostasis. We identified cytosolic deacetylase HDAC6 as a critical regulator of autophagy-mediated cilia shortening during CS exposure. Mice bearing an X chromosome deletion of Hdac6 (Hdac6-/Y) and MTECs from these mice had reduced autophagy and were protected from CS-induced cilia shortening. Autophagy-impaired Becn1-/-, Map1lc3B-/-, and Hdac6-/Y mice or mice injected with an HDAC6 inhibitor were protected from CS-induced mucociliary clearance (MCC) disruption. MCC was preserved in mice given the chemical chaperone 4-phenylbutyric acid, but was disrupted in mice lacking the transcription factor NRF2, suggesting that oxidative stress and altered proteostasis contribute to the disruption of MCC. Analysis of human COPD specimens revealed epigenetic deregulation of HDAC6 by hypomethylation and increased protein expression in the airways. We conclude that an autophagy-dependent pathway regulates cilia length during CS exposure and has potential as a therapeutic target for COPD.

[1]  D. Klionsky Coming soon to a journal near you—The updated guidelines for the use and interpretation of assays for monitoring autophagy , 2014, Autophagy.

[2]  M. Gaca,et al.  Cigarette smoke total particulate matter increases mucous secreting cell numbers in vitro : a potential model of goblet cell hyperplasia , 2014 .

[3]  L. Punzi,et al.  Autophagy in human health and disease. , 2013, The New England journal of medicine.

[4]  Liuqing Yang,et al.  HDAC6 Regulates Mutant SOD1 Aggregation through Two SMIR Motifs and Tubulin Acetylation* , 2013, The Journal of Biological Chemistry.

[5]  Yin Chen,et al.  Regulation of Cigarette Smoke (CS)-Induced Autophagy by Nrf2 , 2013, PloS one.

[6]  D. Slebos,et al.  Cigarette smoke induces endoplasmic reticulum stress response and proteasomal dysfunction in human alveolar epithelial cells , 2013, Experimental physiology.

[7]  F. Martinez,et al.  Global strategy for the diagnosis, management, and prevention of chronic obstructive pulmonary disease: GOLD executive summary. , 2007, American journal of respiratory and critical care medicine.

[8]  G. Washko,et al.  TLR4 deficiency promotes autophagy during cigarette smoke-induced pulmonary emphysema. , 2012, American journal of physiology. Lung cellular and molecular physiology.

[9]  O. Eickelberg,et al.  Acute cigarette smoke exposure impairs proteasome function in the lung. , 2012, American journal of physiology. Lung cellular and molecular physiology.

[10]  Brent S. Pedersen,et al.  Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values , 2012, Bioinform..

[11]  S. McGrath-Morrow,et al.  A Pilot Study to Examine the Effect of Chronic Treatment with Immunosuppressive Drugs on Mucociliary Clearance in a Vagotomized Murine Model , 2012, PLoS ONE.

[12]  C. Thompson,et al.  Heat shock induces rapid resorption of primary cilia , 2012, Journal of cell science.

[13]  K. Kuwano,et al.  Insufficient autophagy promotes bronchial epithelial cell senescence in chronic obstructive pulmonary disease , 2012, Oncoimmunology.

[14]  N. Vij,et al.  Therapeutic strategies to correct proteostasis-imbalance in chronic obstructive lung diseases. , 2012, Current molecular medicine.

[15]  E. Seto,et al.  Modulation of Histone Deacetylase 6 (HDAC6) Nuclear Import and Tubulin Deacetylase Activity through Acetylation* , 2012, The Journal of Biological Chemistry.

[16]  L. Van Den Bosch,et al.  HDAC6 at the Intersection of Neuroprotection and Neurodegeneration , 2012, Traffic.

[17]  Hongwei Yao,et al.  SIRT1 protects against emphysema via FOXO3-mediated reduction of premature senescence in mice. , 2012, The Journal of clinical investigation.

[18]  M. Komatsu,et al.  Transient Aggregation of Ubiquitinated Proteins Is a Cytosolic Unfolded Protein Response to Inflammation and Endoplasmic Reticulum Stress* , 2012, The Journal of Biological Chemistry.

[19]  T. Lamark,et al.  Aggrephagy: Selective Disposal of Protein Aggregates by Macroautophagy , 2012, International journal of cell biology.

[20]  Lea M. Harder,et al.  Supplemental material Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens , 2012 .

[21]  J. Riordan,et al.  Cigarette smoke exposure induces CFTR internalization and insolubility, leading to airway surface liquid dehydration , 2012, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[22]  M. Choma,et al.  Target-of-rapamycin complex 1 (Torc1) signaling modulates cilia size and function through protein synthesis regulation , 2012, Proceedings of the National Academy of Sciences.

[23]  P. Matthias,et al.  Interplay between histone deacetylases and autophagy ‐ from cancer therapy to neurodegeneration , 2012, Immunology and cell biology.

[24]  Masaaki Komatsu,et al.  Autophagy: Renovation of Cells and Tissues , 2011, Cell.

[25]  H. Ouyang,et al.  Protein Aggregates Are Recruited to Aggresome by Histone Deacetylase 6 via Unanchored Ubiquitin C Termini , 2011, The Journal of Biological Chemistry.

[26]  A. Stefanović,et al.  Pulmonary function, oxidative stress and inflammatory markers in severe COPD exacerbation. , 2011, Respiratory medicine.

[27]  F. Martinez,et al.  The future of chronic obstructive pulmonary disease treatment—difficulties of and barriers to drug development , 2011, The Lancet.

[28]  L. Tsiokas,et al.  Cilia and cell cycle re-entry , 2011, Cell cycle.

[29]  W. Ladiges,et al.  Phenylbutyric acid reduces amyloid plaques and rescues cognitive behavior in AD transgenic mice , 2011, Aging cell.

[30]  A. Choi,et al.  Characterization of macroautophagic flux in vivo using a leupeptin-based assay , 2011, Autophagy.

[31]  Huiyi Jiang,et al.  HDAC6 α-tubulin deacetylase: A potential therapeutic target in neurodegenerative diseases , 2011, Journal of the Neurological Sciences.

[32]  R. Dal-Ré Worldwide Behavioral Research on Major Global Causes of Mortality , 2011, Health education & behavior : the official publication of the Society for Public Health Education.

[33]  W. Marshall,et al.  Ciliogenesis: building the cell's antenna , 2011, Nature Reviews Molecular Cell Biology.

[34]  Zhijin Wu,et al.  Accurate genome-scale percentage DNA methylation estimates from microarray data. , 2011, Biostatistics.

[35]  S. Ryter,et al.  Isolation of mouse respiratory epithelial cells and exposure to experimental cigarette smoke at air liquid interface. , 2011, Journal of visualized experiments : JoVE.

[36]  N. Vij,et al.  Critical role of proteostasis-imbalance in pathogenesis of COPD and severe emphysema , 2011, Journal of Molecular Medicine.

[37]  H. Kubo,et al.  Inducible disruption of autophagy in the lung causes airway hyper-responsiveness. , 2011, Biochemical and biophysical research communications.

[38]  Rafał Bartoszewski,et al.  CFTR expression regulation by the unfolded protein response. , 2011, Methods in enzymology.

[39]  Jianqi Yang,et al.  Acetylation-Deacetylation of the Transcription Factor Nrf2 (Nuclear Factor Erythroid 2-related Factor 2) Regulates Its Transcriptional Activity and Nucleocytoplasmic Localization* , 2010, The Journal of Biological Chemistry.

[40]  M. J. Clague,et al.  Ubiquitin: Same Molecule, Different Degradation Pathways , 2010, Cell.

[41]  G. Hunninghake,et al.  Identification of an Autophagy Defect in Smokers’ Alveolar Macrophages , 2010, The Journal of Immunology.

[42]  S. Ryter,et al.  Autophagy protein microtubule-associated protein 1 light chain-3B (LC3B) activates extrinsic apoptosis during cigarette smoke-induced emphysema , 2010, Proceedings of the National Academy of Sciences.

[43]  J. Wedzicha,et al.  Susceptibility to exacerbation in chronic obstructive pulmonary disease. , 2010, The New England journal of medicine.

[44]  Kay Hofmann,et al.  Selective autophagy: ubiquitin-mediated recognition and beyond , 2010, Nature Cell Biology.

[45]  E. Shacter,et al.  The Antioxidant Transcription Factor Nrf2 Negatively Regulates Autophagy and Growth Arrest Induced by the Anticancer Redox Agent Mitoquinone* , 2010, The Journal of Biological Chemistry.

[46]  I. Rahman,et al.  Cigarette smoke-induced autophagy is regulated by SIRT1-PARP-1-dependent mechanism: implication in pathogenesis of COPD. , 2010, Archives of biochemistry and biophysics.

[47]  M. Kollarik,et al.  Vagal control of mucociliary clearance in murine lungs: A study in a chronic preparation , 2010, Autonomic Neuroscience.

[48]  Daniel J Klionsky,et al.  Mammalian autophagy: core molecular machinery and signaling regulation. , 2010, Current opinion in cell biology.

[49]  Congcong He,et al.  The Beclin 1 interactome. , 2010, Current opinion in cell biology.

[50]  J. Taylor,et al.  HDAC6 controls autophagosome maturation essential for ubiquitin‐selective quality‐control autophagy , 2010, The EMBO journal.

[51]  Brian Biehs,et al.  Statistical Applications in Genetics and Molecular Biology Generalizing Moving Averages for Tiling Arrays Using Combined P-Value Statistics , 2011 .

[52]  R. Crystal,et al.  Smoking Is Associated with Shortened Airway Cilia , 2009, PloS one.

[53]  Deepti Malhotra,et al.  Heightened endoplasmic reticulum stress in the lungs of patients with chronic obstructive pulmonary disease: the role of Nrf2-regulated proteasomal activity. , 2009, American journal of respiratory and critical care medicine.

[54]  J. Rosenbaum,et al.  The ubiquitin conjugation system is involved in the disassembly of cilia and flagella , 2009, The Journal of cell biology.

[55]  Zhaoxia Sun,et al.  Zebrafish Tsc1 reveals functional interactions between the cilium and the TOR pathway. , 2009, Human molecular genetics.

[56]  R. Gottlieb,et al.  Novel methods for measuring cardiac autophagy in vivo. , 2009, Methods in enzymology.

[57]  Jennifer Lippincott-Schwartz,et al.  Ubiquitin signals autophagic degradation of cytosolic proteins and peroxisomes , 2008, Proceedings of the National Academy of Sciences.

[58]  Y. Nasuhara,et al.  Down-regulated Nf-e2–related Factor 2 in Pulmonary Macrophages of Aged Smokers and Patients with Chronic Obstructive Pulmonary Disease Materials and Methods Collection of Human Alveolar Macrophages , 2022 .

[59]  Janet S. Lee,et al.  Egr-1 Regulates Autophagy in Cigarette Smoke-Induced Chronic Obstructive Pulmonary Disease , 2008, PloS one.

[60]  S. Ryter,et al.  RETRACTED ARTICLE: Autophagic proteins regulate cigarette smoke induced apoptosis: Protective role of heme oxygenase-1 , 2008, Autophagy.

[61]  John R. Yates,et al.  Chemical and Biological Approaches Synergize to Ameliorate Protein-Folding Diseases , 2008, Cell.

[62]  B. Crestani,et al.  Altered Nrf2/Keap1-Bach1 equilibrium in pulmonary emphysema , 2008, Thorax.

[63]  Rafael A Irizarry,et al.  Comprehensive high-throughput arrays for relative methylation (CHARM). , 2008, Genome research.

[64]  Guido Kroemer,et al.  Autophagy in the Pathogenesis of Disease , 2008, Cell.

[65]  T. Yao,et al.  HDAC6 controls major cell response pathways to cytotoxic accumulation of protein aggregates. , 2007, Genes & development.

[66]  G. Bjørkøy,et al.  p62/SQSTM1 Binds Directly to Atg8/LC3 to Facilitate Degradation of Ubiquitinated Protein Aggregates by Autophagy* , 2007, Journal of Biological Chemistry.

[67]  T. Corcoran,et al.  Mucociliary clearance as an outcome measure for cystic fibrosis clinical research. , 2007, Proceedings of the American Thoracic Society.

[68]  Erica A. Golemis,et al.  HEF1-Dependent Aurora A Activation Induces Disassembly of the Primary Cilium , 2007, Cell.

[69]  Dan Garza,et al.  HDAC6 rescues neurodegeneration and provides an essential link between autophagy and the UPS , 2007, Nature.

[70]  Claudio R. Thoma,et al.  pVHL and GSK3β are components of a primary cilium-maintenance signalling network , 2007, Nature Cell Biology.

[71]  Per O. Seglen,et al.  Methods for Monitoring Autophagy from Yeast to Human , 2007, Autophagy.

[72]  E. Yilmaz,et al.  Chemical Chaperones Reduce ER Stress and Restore Glucose Homeostasis in a Mouse Model of Type 2 Diabetes , 2006, Science.

[73]  Jonathan M. Scholey,et al.  Intraflagellar Transport and Cilium-Based Signaling , 2006, Cell.

[74]  Irina Petrache,et al.  Genetic ablation of Nrf2 enhances susceptibility to cigarette smoke-induced emphysema in mice. , 2004, The Journal of clinical investigation.

[75]  A. Yamamoto,et al.  LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation , 2004, Journal of Cell Science.

[76]  Fred E. Cohen,et al.  Therapeutic approaches to protein-misfolding diseases , 2003, Nature.

[77]  Govind Bhagat,et al.  Promotion of tumorigenesis by heterozygous disruption of the beclin 1 autophagy gene. , 2003, The Journal of clinical investigation.

[78]  J. Vance,et al.  The Deacetylase HDAC6 Regulates Aggresome Formation and Cell Viability in Response to Misfolded Protein Stress , 2003, Cell.

[79]  R. Pauwels,et al.  Chronic obstructive pulmonary disease: molecular and cellularmechanisms , 2003, European Respiratory Journal.

[80]  S. Brody,et al.  Growth and differentiation of mouse tracheal epithelial cells: selection of a proliferative population. , 2002, American journal of physiology. Lung cellular and molecular physiology.

[81]  D. Postma,et al.  Chronic obstructive pulmonary disease. , 2002, Clinical evidence.

[82]  R. Pauwels,et al.  Global strategy for the diagnosis, management, and prevention of chronic obstructive pulmonary disease. NHLBI/WHO Global Initiative for Chronic Obstructive Lung Disease (GOLD) Workshop summary. , 2001, American journal of respiratory and critical care medicine.

[83]  W. Foster,et al.  Methodology for the measurement of mucociliary function in the mouse by scintigraphy. , 2001, Journal of applied physiology.

[84]  H. Hibshoosh,et al.  Induction of autophagy and inhibition of tumorigenesis by beclin 1 , 1999, Nature.

[85]  R. Kopito,et al.  Aggresomes: A Cellular Response to Misfolded Proteins , 1998, The Journal of cell biology.

[86]  Melinda Fitzgerald,et al.  Immunol. Cell Biol. , 1995 .

[87]  J. Goodman,et al.  Hypomethylation of DNA: a possible epigenetic mechanism involved in tumor promotion. , 1995, Progress in clinical and biological research.

[88]  C. Kelling,et al.  Smoke and viral infection cause cilia loss detectable by bronchoalveolar lavage cytology and dynein ELISA. , 1994, American journal of respiratory and critical care medicine.

[89]  D. Herndon,et al.  Inhalation injury to tracheal epithelium in an ovine model of cotton smoke exposure. Early phase (30 minutes). , 1990, The American review of respiratory disease.

[90]  O. Auerbach,et al.  Morphologic alterations induced by short-term cigarette smoking. , 1983, The American journal of pathology.

[91]  P. Satir STUDIES ON CILIA , 1968, The Journal of cell biology.

[92]  P. Satir STUDIES ON CILIA , 1965, The Journal of cell biology.

[93]  J. Ballenger Experimental effect of cigarette smoke on human respiratory cilia. , 1960, The New England journal of medicine.