Using the canine microbiome to bridge translation of cancer immunotherapy from pre-clinical murine models to human clinical trials

The microbiome has clearly been established as a cutting-edge field in tumor immunology and immunotherapy. Growing evidence supports the role of the microbiome in immune surveillance, self-tolerance, and response to immune checkpoint inhibitors such as anti PD-L1 and CTLA-4 blockade (1–6). Moreover, recent studies including those using fecal microbial transplantation (FMT) have demonstrated that response to checkpoint immunotherapies may be conferred or eliminated through gut microbiome modulation (7, 8). Consequently, studies evaluating microbiota-host immune and metabolic interactions remain an area of high impact research. While observations in murine models have highlighted the importance of the microbiome in response to therapy, we lack sufficient understanding of the exact mechanisms underlying these interactions. Furthermore, mouse and human gut microbiome composition may be too dissimilar for discovery of all relevant gut microbial biomarkers. Multiple cancers in dogs, including lymphoma, high grade gliomas, melanomas and osteosarcoma (OSA) closely resemble their human analogues, particularly in regard to metastasis, disease recurrence and response to treatment. Importantly, dogs with these spontaneous cancers also have intact immune systems, suggesting that microbiome analyses in these subjects may provide high yield information, especially in the setting of novel immunotherapy regimens which are currently expanding rapidly in canine comparative oncology (9, 10). Additionally, as onco-microbiotic therapies are developed to modify gut microbiomes for maximal responsiveness, large animal models with intact immune systems will be useful for trialing interventions and monitoring adverse events. Together, pre-clinical mechanistic studies and large animal trials can help fully unlock the potential of the microbiome as a diagnostic and therapeutic target in cancer.

[1]  J. Patterson-Kane,et al.  Cohort profile: The Golden Retriever Lifetime Study (GRLS) , 2022, PloS one.

[2]  A. Kurilshikov,et al.  Environmental factors shaping the gut microbiome in a Dutch population , 2022, Nature.

[3]  S. McSorley,et al.  Cohousing with Dirty Mice Increases the Frequency of Memory T Cells and Has Variable Effects on Intracellular Bacterial Infection , 2022, ImmunoHorizons.

[4]  I. Brodsky,et al.  Arresting microbiome development limits immune system maturation and resistance to infection , 2022, bioRxiv.

[5]  A. Jemal,et al.  Cancer statistics, 2022 , 2022, CA: a cancer journal for clinicians.

[6]  D. Dhawan,et al.  Urine and Fecal Microbiota in a Canine Model of Bladder Cancer , 2021, bioRxiv.

[7]  R. Hayes,et al.  Bacteroides vulgatus and Bacteroides dorei predict immune-related adverse events in immune checkpoint blockade treatment of metastatic melanoma , 2021, Genome medicine.

[8]  Shaying Zhao,et al.  Canine tumor mutational burden is correlated with TP53 mutation across tumor types and breeds , 2021, Nature Communications.

[9]  Min Jung Kim,et al.  Comparison of Gut Microbiota of 96 Healthy Dogs by Individual Traits: Breed, Age, and Body Condition Score , 2021, Animals : an open access journal from MDPI.

[10]  Robert J. Pantazes,et al.  Nanobody-based CTLA4 inhibitors for immune checkpoint blockade therapy of canine cancer patients , 2021, Scientific Reports.

[11]  G. Weinstock,et al.  Host genetic control of gut microbiome composition , 2021, Mammalian Genome.

[12]  A. Woodward,et al.  Longitudinal Survey of Fecal Microbiota in Healthy Dogs Administered a Commercial Probiotic , 2021, Frontiers in Veterinary Science.

[13]  Caroline H. Johnson,et al.  Intratumour microbiome associated with the infiltration of cytotoxic CD8+ T cells and patient survival in cutaneous melanoma. , 2021, European journal of cancer.

[14]  R. Marsella Advances in our understanding of canine atopic dermatitis. , 2021, Veterinary dermatology.

[15]  C. Eng,et al.  Human breast microbiome correlates with prognostic features and immunological signatures in breast cancer , 2021, Genome medicine.

[16]  J. Badger,et al.  Fecal microbiota transplant overcomes resistance to anti–PD-1 therapy in melanoma patients , 2021, Science.

[17]  D. Siegel,et al.  Development of a fully canine anti-canine CTLA4 monoclonal antibody for comparative translational research in dogs with spontaneous tumors , 2021, mAbs.

[18]  N. Ajami,et al.  Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients , 2020, Science.

[19]  A. Kanner,et al.  TAMI-40. TUMOR MICROBIOME AND GLIOBLASTOMA (GBM) , 2020 .

[20]  C. Mazcko,et al.  Improving human cancer therapy through the evaluation of pet dogs , 2020, Nature reviews. Cancer.

[21]  K. McCoy,et al.  Microbiome-derived inosine modulates response to checkpoint inhibitor immunotherapy , 2020, Science.

[22]  R. Rebhun,et al.  Development of canine PD-1/PD-L1 specific monoclonal antibodies and amplification of canine T cell function , 2020, PloS one.

[23]  Noam Shental,et al.  The human tumor microbiome is composed of tumor type–specific intracellular bacteria , 2020, Science.

[24]  D. Peroni,et al.  Microbiome Composition and Its Impact on the Development of Allergic Diseases , 2020, Frontiers in Immunology.

[25]  J. Chun,et al.  Difference of gut microbiota composition based on the body condition scores in dogs , 2020, Journal of animal science and technology.

[26]  V. Prasad,et al.  Estimation of the Percentage of US Patients With Cancer Who Are Eligible for Immune Checkpoint Inhibitor Drugs , 2020, JAMA network open.

[27]  Ruifu Yang,et al.  The canine gastrointestinal microbiota: early studies and research frontiers , 2020, Gut microbes.

[28]  R. Pilla,et al.  The Role of the Canine Gut Microbiome and Metabolome in Health and Gastrointestinal Disease , 2020, Frontiers in Veterinary Science.

[29]  D. Lang,et al.  Differences in tumor initiation and progression of melanoma in the BrafCA;Tyr‐CreERT2;Ptenf/f model between male and female mice , 2020, Pigment cell & melanoma research.

[30]  C. Reinhardt,et al.  Antibiotic Treatment Protocols and Germ-Free Mouse Models in Vascular Research , 2019, Front. Immunol..

[31]  J. Badger,et al.  Laboratory mice born to wild mice have natural microbiota and model human immune responses , 2019, Science.

[32]  Christine B. Peterson,et al.  Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes , 2019, Cell.

[33]  Y. Kashi,et al.  Murine Genetic Background Has a Stronger Impact on the Composition of the Gut Microbiota than Maternal Inoculation or Exposure to Unlike Exogenous Microbiota , 2019, Applied and Environmental Microbiology.

[34]  Winnie S. Liang,et al.  Canine osteosarcoma genome sequencing identifies recurrent mutations in DMD and the histone methyltransferase gene SETD2 , 2019, Communications Biology.

[35]  Kevin C. Johnson,et al.  Comparative molecular life history of spontaneous canine and human gliomas , 2019, bioRxiv.

[36]  G. Eberl,et al.  A Weaning Reaction to Microbiota Is Required for Resistance to Immunopathologies in the Adult. , 2019, Immunity.

[37]  Heikki Joensuu,et al.  Tumor-Infiltrating Lymphocytes and Prognosis: A Pooled Individual Patient Analysis of Early-Stage Triple-Negative Breast Cancers. , 2019, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[38]  R. Gray,et al.  Tumor-In fi ltrating Lymphocytes and Prognosis : A Pooled Individual Patient Analysis of Early-Stage Triple-Negative Breast Cancers , 2019 .

[39]  D. Thamm,et al.  Canine sarcomas as a surrogate for the human disease , 2018, Pharmacology & therapeutics.

[40]  C. Torre,et al.  Fecal microbiota composition changes after a BW loss diet in Beagle dogs. , 2018, Journal of animal science.

[41]  A. Goldstein,et al.  Microbiome Composition in Both Wild-Type and Disease Model Mice Is Heavily Influenced by Mouse Facility , 2018, Front. Microbiol..

[42]  Voichita D. Marinescu,et al.  SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma. , 2018, Cancer research.

[43]  F. Giles,et al.  Current landscape and future of dual anti-CTLA4 and PD-1/PD-L1 blockade immunotherapy in cancer; lessons learned from clinical trials with melanoma and non-small cell lung cancer (NSCLC) , 2018, Journal of Immunotherapy for Cancer.

[44]  Peer Bork,et al.  Similarity of the dog and human gut microbiomes in gene content and response to diet , 2018, Microbiome.

[45]  Rob Knight,et al.  Current understanding of the human microbiome , 2018, Nature Medicine.

[46]  S. Pushalkar,et al.  The Pancreatic Cancer Microbiome Promotes Oncogenesis by Induction of Innate and Adaptive Immune Suppression. , 2018, Cancer discovery.

[47]  A. Kurilshikov,et al.  Environment dominates over host genetics in shaping human gut microbiota , 2018, Nature.

[48]  G. Rossi,et al.  Faecal microbiota in dogs with multicentric lymphoma , 2018, Veterinary and comparative oncology.

[49]  Laurence Zitvogel,et al.  Gut microbiome influences efficacy of PD-1–based immunotherapy against epithelial tumors , 2018, Science.

[50]  E. Le Chatelier,et al.  Gut microbiome modulates response to anti–PD-1 immunotherapy in melanoma patients , 2018, Science.

[51]  Riyue Bao,et al.  The commensal microbiome is associated with anti–PD-1 efficacy in metastatic melanoma patients , 2018, Science.

[52]  J. Modiano,et al.  Radiotherapy enhances natural killer cell cytotoxicity and localization in pre-clinical canine sarcomas and first-in-dog clinical trial , 2017, Journal of Immunotherapy for Cancer.

[53]  Kyle Bittinger,et al.  A role for bacterial urease in gut dysbiosis and Crohn’s disease , 2017, Science Translational Medicine.

[54]  N. Mongan,et al.  Comparative review of human and canine osteosarcoma: morphology, epidemiology, prognosis, treatment and genetics , 2017, Acta Veterinaria Scandinavica.

[55]  T. Yonezawa,et al.  Fecal microbiome in dogs with inflammatory bowel disease and intestinal lymphoma , 2017, The Journal of veterinary medical science.

[56]  Soumen Roy,et al.  Microbiota: a key orchestrator of cancer therapy , 2017, Nature Reviews Cancer.

[57]  A. Rodrigues Hoffmann The cutaneous ecosystem: the roles of the skin microbiome in health and its association with inflammatory skin conditions in humans and animals , 2017, Veterinary dermatology.

[58]  S. O'keefe Diet, microorganisms and their metabolites, and colon cancer , 2016, Nature Reviews Gastroenterology &Hepatology.

[59]  J. Modiano,et al.  Canine cancer immunotherapy studies: linking mouse and human , 2016, Journal of Immunotherapy for Cancer.

[60]  R. Knight,et al.  Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks , 2016, Nature Microbiology.

[61]  Molly K. Gibson,et al.  Antibiotic perturbation of the preterm infant gut microbiome and resistome , 2016, Gut microbes.

[62]  W. Garrett,et al.  Gut microbiota, metabolites and host immunity , 2016, Nature Reviews Immunology.

[63]  J. Raes,et al.  Population-level analysis of gut microbiome variation , 2016, Science.

[64]  S. Shiao,et al.  Blocking Indolamine-2,3-Dioxygenase Rebound Immune Suppression Boosts Antitumor Effects of Radio-Immunotherapy in Murine Models and Spontaneous Canine Malignancies , 2016, Clinical Cancer Research.

[65]  J. Suchodolski,et al.  Understanding the canine intestinal microbiota and its modification by pro‐, pre‐ and synbiotics – what is the evidence? , 2016, Veterinary medicine and science.

[66]  A. Ericsson,et al.  Evaluation of Fecal Microbiota Transfer as Treatment for Postweaning Diarrhea in Research-Colony Puppies. , 2016, Journal of the American Association for Laboratory Animal Science : JAALAS.

[67]  F. Ginhoux,et al.  Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota , 2015, Science.

[68]  Jason B. Williams,et al.  Commensal Bifidobacterium promotes antitumor immunity and facilitates anti–PD-L1 efficacy , 2015, Science.

[69]  Eleazar Eskin,et al.  Genetic and environmental control of host-gut microbiota interactions , 2015, Genome research.

[70]  Chang-Seon Song,et al.  Comparison of the Oral Microbiomes of Canines and Their Owners Using Next-Generation Sequencing , 2015, PloS one.

[71]  S. Jonjić,et al.  Binding of the Fap2 protein of Fusobacterium nucleatum to human inhibitory receptor TIGIT protects tumors from immune cell attack. , 2015, Immunity.

[72]  Jeroen Raes,et al.  How informative is the mouse for human gut microbiota research? , 2015, Disease Models & Mechanisms.

[73]  Angela C. Poole,et al.  Human Genetics Shape the Gut Microbiome , 2014, Cell.

[74]  Lawrence A. David,et al.  Diet rapidly and reproducibly alters the human gut microbiome , 2013, Nature.

[75]  J. Goedert,et al.  Human gut microbiome and risk for colorectal cancer. , 2013, Journal of the National Cancer Institute.

[76]  K. McCoy,et al.  Intestinal Microbial Diversity during Early-Life Colonization Shapes Long-Term IgE Levels , 2013, Cell host & microbe.

[77]  J. Petrosino,et al.  The Gut Microbiome Modulates Colon Tumorigenesis , 2013, mBio.

[78]  Se Jin Song,et al.  Cohabiting family members share microbiota with one another and with their dogs , 2013, eLife.

[79]  A. Rissanen,et al.  Habitual dietary intake is associated with stool microbiota composition in monozygotic twins. , 2013, The Journal of nutrition.

[80]  J. Dobson Breed-Predispositions to Cancer in Pedigree Dogs , 2013, ISRN veterinary science.

[81]  C. Datz,et al.  Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth , 2012, Nature.

[82]  R. Scolyer,et al.  Tumor-infiltrating lymphocyte grade is an independent predictor of sentinel lymph node status and survival in patients with cutaneous melanoma. , 2012, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[83]  E. Chesler,et al.  Host genetic and environmental effects on mouse intestinal microbiota , 2012, The ISME Journal.

[84]  J. Neal,et al.  Ipilimumab in combination with paclitaxel and carboplatin as first-line treatment in stage IIIB/IV non-small-cell lung cancer: results from a randomized, double-blind, multicenter phase II study. , 2012, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[85]  Raul Rabadan,et al.  Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4. , 2012, Cancer cell.

[86]  A. Gewirtz,et al.  Obesity and its associated disease: a role for microbiota? , 2012, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[87]  J. Clemente,et al.  Human gut microbiome viewed across age and geography , 2012, Nature.

[88]  A. Tsao Ipilimumab in Combination With Paclitaxel and Carboplatin As First-Line Treatment in Stage IIIB/IV Non–Small-Cell Lung Cancer: Results From a Randomized, Double-Blind, Multicenter Phase II Study , 2012 .

[89]  John Penders,et al.  Mode and place of delivery, gastrointestinal microbiota, and their influence on asthma and atopy. , 2011, The Journal of allergy and clinical immunology.

[90]  D. Schadendorf,et al.  Improved survival with ipilimumab in patients with metastatic melanoma. , 2010, The New England journal of medicine.

[91]  J. Kirpensteijn,et al.  TP53 gene mutations in canine osteosarcoma. , 2008, Veterinary surgery : VS.

[92]  N. Pace,et al.  Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases , 2007, Proceedings of the National Academy of Sciences.

[93]  S. Hirohashi,et al.  FOXP3+ Regulatory T Cells Affect the Development and Progression of Hepatocarcinogenesis , 2007, Clinical Cancer Research.

[94]  P. Turnbaugh,et al.  Microbial ecology: Human gut microbes associated with obesity , 2006, Nature.

[95]  S. Rosenberg,et al.  Tumor regression in patients with metastatic renal cancer treated with a monoclonal antibody to CTLA4 (MDX-010) , 2005 .

[96]  S. Bull,et al.  TP53 mutations and outcome in osteosarcoma: a prospective, multicenter study. , 2005, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.