A density-functional theory-based neural network potential for water clusters including van der Waals corrections.

The fundamental importance of water for many chemical processes has motivated the development of countless efficient but approximate water potentials for large-scale molecular dynamics simulations, from simple empirical force fields to very sophisticated flexible water models. Accurate and generally applicable water potentials should fulfill a number of requirements. They should have a quality close to quantum chemical methods, they should explicitly depend on all degrees of freedom including all relevant many-body interactions, and they should be able to describe molecular dissociation and recombination. In this work, we present a high-dimensional neural network (NN) potential for water clusters based on density-functional theory (DFT) calculations, which is constructed using clusters containing up to 10 monomers and is in principle able to meet all these requirements. We investigate the reliability of specific parametrizations employing two frequently used generalized gradient approximation (GGA) exchange-correlation functionals, PBE and RPBE, as reference methods. We find that the binding energy errors of the NN potentials with respect to DFT are significantly lower than the typical uncertainties of DFT calculations arising from the choice of the exchange-correlation functional. Further, we examine the role of van der Waals interactions, which are not properly described by GGA functionals. Specifically, we incorporate the D3 scheme suggested by Grimme (J. Chem. Phys. 2010, 132, 154104) in our potentials and demonstrate that it can be applied to GGA-based NN potentials in the same way as to DFT calculations without modification. Our results show that the description of small water clusters provided by the RPBE functional is significantly improved if van der Waals interactions are included, while in case of the PBE functional, which is well-known to yield stronger binding than RPBE, van der Waals corrections lead to overestimated binding energies.

[1]  P. P. Ewald Die Berechnung optischer und elektrostatischer Gitterpotentiale , 1921 .

[2]  F. L. Hirshfeld Bonded-atom fragments for describing molecular charge densities , 1977 .

[3]  W. L. Jorgensen,et al.  Comparison of simple potential functions for simulating liquid water , 1983 .

[4]  Car,et al.  Unified approach for molecular dynamics and density-functional theory. , 1985, Physical review letters.

[5]  T. Straatsma,et al.  THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS , 1987 .

[6]  Jorge Nocedal,et al.  On the limited memory BFGS method for large scale optimization , 1989, Math. Program..

[7]  George Cybenko,et al.  Approximation by superpositions of a sigmoidal function , 1992, Math. Control. Signals Syst..

[8]  M. A. Collins,et al.  Molecular potential energy surfaces by interpolation , 1994 .

[9]  Steven D. Brown,et al.  Neural network models of potential energy surfaces , 1995 .

[10]  Burke,et al.  Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.

[11]  Harold A. Scheraga,et al.  Description of the potential energy surface of the water dimer with an artificial neural network , 1997 .

[12]  Kersti Hermansson,et al.  Representation of Intermolecular Potential Functions by Neural Networks , 1998 .

[13]  J. J. Soares Neto,et al.  The fitting of potential energy surfaces using neural networks. Application to the study of the photodissociation processes , 1998 .

[14]  Y. Sugita,et al.  Replica-exchange molecular dynamics method for protein folding , 1999 .

[15]  J. Nørskov,et al.  Improved adsorption energetics within density-functional theory using revised Perdew-Burke-Ernzerhof functionals , 1999 .

[16]  Ralf Ludwig,et al.  Water: From Clusters to the Bulk. , 2001, Angewandte Chemie.

[17]  Bertrand Guillot,et al.  A reappraisal of what we have learnt during three decades of computer simulations on water , 2002 .

[18]  Harold A. Scheraga,et al.  A polarizable force field for water using an artificial neural network , 2002 .

[19]  T. M. Rocha Filho,et al.  The use of neural networks for fitting potential energy surfaces: A comparative case study for the H+3 molecule , 2003 .

[20]  W. Goddard,et al.  Accurate Energies and Structures for Large Water Clusters Using the X3LYP Hybrid Density Functional , 2004 .

[21]  M. Dion,et al.  van der Waals density functional for general geometries. , 2004, Physical review letters.

[22]  Stefan Grimme,et al.  Accurate description of van der Waals complexes by density functional theory including empirical corrections , 2004, J. Comput. Chem..

[23]  A. Gross,et al.  Representing high-dimensional potential-energy surfaces for reactions at surfaces by neural networks , 2004 .

[24]  James B Witkoskie,et al.  Neural Network Models of Potential Energy Surfaces:  Prototypical Examples. , 2005, Journal of chemical theory and computation.

[25]  R Komanduri,et al.  Ab initio potential-energy surfaces for complex, multichannel systems using modified novelty sampling and feedforward neural networks. , 2005, The Journal of chemical physics.

[26]  J. Behler,et al.  Dissociation of O2 at Al(111): the role of spin selection rules. , 2004, Physical Review Letters.

[27]  Ranga Komanduri,et al.  Molecular dynamics investigations of the dissociation of SiO2 on an ab initio potential energy surface obtained using neural network methods. , 2006, The Journal of chemical physics.

[28]  G. Jansen,et al.  A new potential energy surface for the water dimer obtained from separate fits of ab initio electrostatic, induction, dispersion and exchange energy contributions , 2006 .

[29]  Sergei Manzhos,et al.  Using neural networks to represent potential surfaces as sums of products. , 2006, The Journal of chemical physics.

[30]  T. Carrington,et al.  A nested molecule-independent neural network approach for high-quality potential fits. , 2006, The journal of physical chemistry. A.

[31]  Stefan Grimme,et al.  Semiempirical GGA‐type density functional constructed with a long‐range dispersion correction , 2006, J. Comput. Chem..

[32]  J. Behler,et al.  Representing molecule-surface interactions with symmetry-adapted neural networks. , 2007, The Journal of chemical physics.

[33]  Michele Parrinello,et al.  Generalized neural-network representation of high-dimensional potential-energy surfaces. , 2007, Physical review letters.

[34]  M. Parrinello,et al.  Canonical sampling through velocity rescaling. , 2007, The Journal of chemical physics.

[35]  Krzysztof Szalewicz,et al.  Predictions of the Properties of Water from First Principles , 2007, Science.

[36]  Jeffery K Ludwig,et al.  Ab initio molecular dynamics of hydrogen dissociation on metal surfaces using neural networks and novelty sampling. , 2007, The Journal of chemical physics.

[37]  G. Groenenboom,et al.  Polarizable interaction potential for water from coupled cluster calculations. I. Analysis of dimer potential energy surface. , 2008, The Journal of chemical physics.

[38]  A. Tkatchenko,et al.  On the accuracy of density-functional theory exchange-correlation functionals for H bonds in small water clusters. II. The water hexamer and van der Waals interactions. , 2008, The Journal of chemical physics.

[39]  Sergei Manzhos,et al.  Using neural networks, optimized coordinates, and high-dimensional model representations to obtain a vinyl bromide potential surface. , 2008, The Journal of chemical physics.

[40]  Sotiris S Xantheas,et al.  Development of transferable interaction potentials for water. V. Extension of the flexible, polarizable, Thole-type model potential (TTM3-F, v. 3.0) to describe the vibrational spectra of water clusters and liquid water. , 2008, The Journal of chemical physics.

[41]  J. Behler,et al.  Metadynamics simulations of the high-pressure phases of silicon employing a high-dimensional neural network potential. , 2008, Physical review letters.

[42]  J. Behler,et al.  Pressure‐induced phase transitions in silicon studied by neural network‐based metadynamics simulations , 2008 .

[43]  A. Tkatchenko,et al.  Accurate molecular van der Waals interactions from ground-state electron density and free-atom reference data. , 2009, Physical review letters.

[44]  P. Silvestrelli Improvement in hydrogen bond description using van der Waals-corrected DFT: The case of small water clusters , 2009 .

[45]  Krzysztof Szalewicz,et al.  Towards the complete understanding of water by a first-principles computational approach , 2009 .

[46]  Sotiria Lampoudi,et al.  TiReX: Replica-exchange molecular dynamics using Tinker , 2009, Comput. Phys. Commun..

[47]  P. Popelier,et al.  Dynamically Polarizable Water Potential Based on Multipole Moments Trained by Machine Learning. , 2009, Journal of chemical theory and computation.

[48]  Joel M. Bowman,et al.  Permutationally invariant potential energy surfaces in high dimensionality , 2009 .

[49]  Joel M Bowman,et al.  Full-dimensional, ab initio potential energy and dipole moment surfaces for water. , 2009, The Journal of chemical physics.

[50]  M. Malshe,et al.  Development of generalized potential-energy surfaces using many-body expansions, neural networks, and moiety energy approximations. , 2009, The Journal of chemical physics.

[51]  Gregory S. Tschumper,et al.  CCSD(T) complete basis set limit relative energies for low-lying water hexamer structures. , 2009, The journal of physical chemistry. A.

[52]  Douglas B Kell,et al.  Optimal construction of a fast and accurate polarisable water potential based on multipole moments trained by machine learning. , 2009, Physical chemistry chemical physics : PCCP.

[53]  Matthias Scheffler,et al.  Ab initio molecular simulations with numeric atom-centered orbitals , 2009, Comput. Phys. Commun..

[54]  Joseph C. Fogarty,et al.  A reactive molecular dynamics simulation of the silica-water interface. , 2010, The Journal of chemical physics.

[55]  J. Bowman,et al.  Towards an ab initio flexible potential for water, and post-harmonic quantum vibrational analysis of water clusters , 2010 .

[56]  S. Grimme,et al.  A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. , 2010, The Journal of chemical physics.

[57]  B. Braams,et al.  Ab-Initio-Based Potential Energy Surfaces for Complex Molecules and Molecular Complexes , 2010 .

[58]  Kenneth D Jordan,et al.  A second generation distributed point polarizable water model. , 2010, The Journal of chemical physics.

[59]  Rustam Z. Khaliullin,et al.  Graphite-diamond phase coexistence study employing a neural-network mapping of the ab initio potential energy surface , 2010 .

[60]  Daniel Blankschtein,et al.  Molecular dynamics simulation study of water surfaces: comparison of flexible water models. , 2010, The journal of physical chemistry. B.

[61]  Kersti Hermansson,et al.  Development and validation of a ReaxFF reactive force field for Cu cation/water interactions and copper metal/metal oxide/metal hydroxide condensed phases. , 2010, The journal of physical chemistry. A.

[62]  Thomas D. Kuhne,et al.  Ab initio quality neural-network potential for sodium , 2010, 1002.2879.

[63]  P. Popelier,et al.  Potential energy surfaces fitted by artificial neural networks. , 2010, The journal of physical chemistry. A.

[64]  Sergei Manzhos,et al.  A model for the dissociative adsorption of N2O on Cu(1 0 0) using a continuous potential energy surface , 2010 .

[65]  Nongnuch Artrith,et al.  High-dimensional neural-network potentials for multicomponent systems: Applications to zinc oxide , 2011 .

[66]  Berhane Temelso,et al.  Benchmark structures and binding energies of small water clusters with anharmonicity corrections. , 2011, The journal of physical chemistry. A.

[67]  Carlos Vega,et al.  Simulating water with rigid non-polarizable models: a general perspective. , 2011, Physical chemistry chemical physics : PCCP.

[68]  J. Behler Atom-centered symmetry functions for constructing high-dimensional neural network potentials. , 2011, The Journal of chemical physics.

[69]  J. Behler Neural network potential-energy surfaces in chemistry: a tool for large-scale simulations. , 2011, Physical chemistry chemical physics : PCCP.

[70]  J. Behler,et al.  Construction of high-dimensional neural network potentials using environment-dependent atom pairs. , 2012, The Journal of chemical physics.

[71]  Volodymyr Babin,et al.  Toward a Universal Water Model: First Principles Simulations from the Dimer to the Liquid Phase. , 2012, The journal of physical chemistry letters.

[72]  J. Klimeš,et al.  Perspective: Advances and challenges in treating van der Waals dispersion forces in density functional theory. , 2012, The Journal of chemical physics.

[73]  Germany,et al.  Neural network interatomic potential for the phase change material GeTe , 2012, 1201.2026.

[74]  Jörg Behler,et al.  A neural network potential-energy surface for the water dimer based on environment-dependent atomic energies and charges. , 2012, The Journal of chemical physics.

[75]  Nongnuch Artrith,et al.  High-dimensional neural network potentials for metal surfaces: A prototype study for copper , 2012 .

[76]  S. Scandolo,et al.  Ab initio parameterization of an all-atom polarizable and dissociable force field for water. , 2012, The Journal of chemical physics.

[77]  Katrin Tonigold,et al.  Dispersive interactions in water bilayers at metallic surfaces: A comparison of the PBE and RPBE functional including semiempirical dispersion corrections , 2012, J. Comput. Chem..

[78]  Hung M. Le,et al.  Modified feed-forward neural network structures and combined-function-derivative approximations incorporating exchange symmetry for potential energy surface fitting. , 2012, The journal of physical chemistry. A.

[79]  Jörg Behler,et al.  A Full-Dimensional Neural Network Potential-Energy Surface for Water Clusters up to the Hexamer , 2013 .

[80]  Nongnuch Artrith,et al.  Neural network potentials for metals and oxides – First applications to copper clusters at zinc oxide , 2013 .