Feedback Regulation and Its Efficiency in Biochemical Networks
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[1] A. Oudenaarden,et al. Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences , 2008, Cell.
[2] Paul J. Choi,et al. Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells , 2010, Science.
[3] Kazuyuki Aihara,et al. Multivariate analysis of noise in genetic regulatory networks. , 2004, Journal of theoretical biology.
[4] Johan Paulsson,et al. Separating intrinsic from extrinsic fluctuations in dynamic biological systems , 2011, Proceedings of the National Academy of Sciences.
[5] Haim H. Permuter,et al. Interpretations of Directed Information in Portfolio Theory, Data Compression, and Hypothesis Testing , 2009, IEEE Transactions on Information Theory.
[6] T. Elston,et al. Stochasticity in gene expression: from theories to phenotypes , 2005, Nature Reviews Genetics.
[7] M. Thattai,et al. Attenuation of noise in ultrasensitive signaling cascades. , 2002, Biophysical journal.
[8] J. Paulsson,et al. Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression , 2008, Science.
[9] Diego A Oyarzún,et al. Noise propagation in synthetic gene circuits for metabolic control. , 2015, ACS synthetic biology.
[10] Michael P H Stumpf,et al. Decomposing noise in biochemical signaling systems highlights the role of protein degradation. , 2011, Biophysical journal.
[11] P. Swain,et al. Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[12] D. Sherrington. Stochastic Processes in Physics and Chemistry , 1983 .
[13] V. Shahrezaei,et al. The stochastic nature of biochemical networks. , 2008, Current opinion in biotechnology.
[14] Kazuyuki Aihara,et al. Noise-reduction through interaction in gene expression and biochemical reaction processes. , 2004, Journal of theoretical biology.
[15] Haidong Feng,et al. Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis , 2012, Nature Structural &Molecular Biology.
[16] Peter S. Swain,et al. The Fidelity of Dynamic Signaling by Noisy Biomolecular Networks , 2013, PLoS Comput. Biol..
[17] Mads Kærn,et al. Noise in eukaryotic gene expression , 2003, Nature.
[18] A. Páldi,et al. Epigenetic gene expression noise and phenotypic diversification of clonal cell populations. , 2008, Differentiation; research in biological diversity.
[19] Clive G. Bowsher,et al. Environmental sensing, information transfer, and cellular decision-making. , 2014, Current opinion in biotechnology.
[20] G. Lahav,et al. Encoding and Decoding Cellular Information through Signaling Dynamics , 2013, Cell.
[21] M. Savageau. Comparison of classical and autogenous systems of regulation in inducible operons , 1974, Nature.
[22] K. Fujimoto,et al. Noisy signal amplification in ultrasensitive signal transduction. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[23] Tetsuya J Kobayashi,et al. Theoretical aspects of cellular decision-making and information-processing. , 2012, Advances in experimental medicine and biology.
[24] Takeshi Norimatsu,et al. Encoding and Decoding , 2016 .
[25] M. L. Simpson,et al. Gene network shaping of inherent noise spectra , 2006, Nature.
[26] L. Serrano,et al. Engineering stability in gene networks by autoregulation , 2000, Nature.
[27] Johan Paulsson,et al. Using temporal correlations and full distributions to separate intrinsic and extrinsic fluctuations in biological systems. , 2012, Physical review letters.
[28] M. Elowitz,et al. Functional roles for noise in genetic circuits , 2010, Nature.
[29] J. Paulsson. Summing up the noise in gene networks , 2004, Nature.
[30] Jay D Keasling,et al. BglBricks: A flexible standard for biological part assembly , 2010, Journal of biological engineering.
[31] Clive G. Bowsher,et al. Identifying sources of variation and the flow of information in biochemical networks , 2012, Proceedings of the National Academy of Sciences.
[32] M. L. Simpson,et al. Frequency domain analysis of noise in autoregulated gene circuits , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[33] Hirokazu Tozaki,et al. Estimation of the source-by-source effect of autorepression on genetic noise. , 2008, Biophysical journal.
[34] R. Cheong,et al. Noise decomposition of intracellular biochemical signaling networks using nonequivalent reporters , 2014, Proceedings of the National Academy of Sciences.
[35] D. Gillespie. A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions , 1976 .
[36] Sekhar Tatikonda,et al. Feedback capacity of finite-state machine channels , 2005, IEEE Transactions on Information Theory.
[37] J. Raser,et al. Control of Stochasticity in Eukaryotic Gene Expression , 2004, Science.
[38] C. Gardiner. Stochastic Methods: A Handbook for the Natural and Social Sciences , 2009 .
[39] Stanislas Leibler,et al. The Value of Information for Populations in Varying Environments , 2010, ArXiv.
[40] 沙川 貴大,et al. Thermodynamics of information processing in small systems , 2011 .
[41] A. van Oudenaarden,et al. Noise Propagation in Gene Networks , 2005, Science.
[42] M. Ueda,et al. Stochastic signal processing and transduction in chemotactic response of eukaryotic cells. , 2007, Biophysical journal.
[43] J. Elf,et al. Fast evaluation of fluctuations in biochemical networks with the linear noise approximation. , 2003, Genome research.
[44] P. Swain,et al. Gene Regulation at the Single-Cell Level , 2005, Science.
[45] G. Vinnicombe,et al. Fundamental limits on the suppression of molecular fluctuations , 2010, Nature.
[46] Dan ie l T. Gil lespie. A rigorous derivation of the chemical master equation , 1992 .
[47] Declan G. Bates,et al. Feedback Control in Systems Biology , 2011 .
[48] Markus Kollmann,et al. Quantifying origins of cell-to-cell variations in gene expression. , 2008, Biophysical journal.
[49] Ertugrul M. Ozbudak,et al. Regulation of noise in the expression of a single gene , 2002, Nature Genetics.
[50] P. Swain,et al. Stochastic Gene Expression in a Single Cell , 2002, Science.
[51] M. Elowitz,et al. A synthetic three-color scaffold for monitoring genetic regulation and noise , 2010, Journal of biological engineering.