Intra-operative brain tumor detection with deep learning-optimized hyperspectral imaging

Surgery for gliomas (intrinsic brain tumors), especially when low-grade, is challenging due to the infiltrative nature of the lesion. Currently, no real-time, intra-operative, label-free and wide-field tool is available to assist and guide the surgeon to find the relevant demarcations for these tumors. While marker-based methods exist for the high-grade glioma case, there is no convenient solution available for the low-grade case; thus, marker-free optical techniques represent an attractive option. Although RGB imaging is a standard tool in surgical microscopes, it does not contain sufficient information for tissue differentiation. We leverage the richer information from hyperspectral imaging (HSI), acquired with a snapscan camera in the 468 − 787 nm range, coupled to a surgical microscope, to build a deep-learning-based diagnostic tool for cancer resection with potential for intra-operative guidance. However, the main limitation of the HSI snapscan camera is the image acquisition time, limiting its widespread deployment in the operation theater. Here, we investigate the effect of HSI channel reduction and pre-selection to scope the design space for the development of cheaper and faster sensors. Neural networks are used to identify the most important spectral channels for tumor tissue differentiation, optimizing the trade-off between the number of channels and precision to enable real-time intra-surgical application. We evaluate the performance of our method on a clinical dataset that was acquired during surgery on five patients. By demonstrating the possibility to efficiently detect low-grade glioma, these results can lead to better cancer resection demarcations, potentially improving treatment effectiveness and patient outcome.

[1]  T. Giannantonio,et al.  Integrating hyperspectral imaging in an existing intra-operative environment for detection of intrinsic brain tumors , 2023, BiOS.

[2]  F. Castander,et al.  The PAU Survey: Narrow-band image photometry , 2022, Monthly Notices of the Royal Astronomical Society.

[3]  Javier A. Hernández,et al.  Neural Networks-Based On-Site Dermatologic Diagnosis through Hyperspectral Epidermal Images , 2022, Sensors.

[4]  G. Callicó,et al.  Deep Convolutional Generative Adversarial Networks to Enhance Artificial Intelligence in Healthcare: A Skin Cancer Application , 2022, Sensors.

[5]  Yue Wu,et al.  Review on the Application of Hyperspectral Imaging Technology of the Exposed Cortex in Cerebral Surgery , 2022, Frontiers in Bioengineering and Biotechnology.

[6]  Juan F. Piñeiro,et al.  Hyperspectral imaging for in-vivo/ex-vivo tissue analysis of human brain cancer , 2022, Medical Imaging.

[7]  J. Marescaux,et al.  Intraoperative Guidance Using Hyperspectral Imaging: A Review for Surgeons , 2021, Diagnostics.

[8]  K. Umapathy,et al.  Empirical Mode Decomposition Based Hyperspectral Data Analysis for Brain Tumor Classification , 2021, 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC).

[9]  Juan F. Piñeiro,et al.  VNIR–NIR hyperspectral imaging fusion targeting intraoperative brain cancer detection , 2021, Scientific Reports.

[10]  I. Tachtsidis,et al.  A Hyperspectral Imaging System for Mapping Haemoglobin and Cytochrome-c-Oxidase Concentration Changes in the Exposed Cerebral Cortex , 2021, IEEE Journal of Selected Topics in Quantum Electronics.

[11]  Eduardo Juárez,et al.  Supervised Machine Learning Methods and Hyperspectral Imaging Techniques Jointly Applied for Brain Cancer Classification , 2021, Sensors.

[12]  Da-Wen Sun,et al.  Rapid and noninvasive sensory analyses of food products by hyperspectral imaging: Recent application developments , 2021 .

[13]  K. Iihara,et al.  A Novel Hyperspectral Imaging System for Intraoperative Prediction of Cerebral Hyperperfusion Syndrome after Superficial Temporal Artery-Middle Cerebral Artery Anastomosis in Patients with Moyamoya Disease , 2021, Cerebrovascular Diseases.

[14]  Himar Fabelo,et al.  Information Extraction Techniques in Hyperspectral Imaging Biomedical Applications , 2020, Multimedia Information Retrieval.

[15]  M. Sdika,et al.  Optimal spectral combination of a hyperspectral camera for intraoperative hemodynamic and metabolic brain mapping , 2020, European Conference on Biomedical Optics.

[16]  Qiaobo Hao,et al.  Fusing Multiple Deep Models for In Vivo Human Brain Hyperspectral Image Classification to Identify Glioblastoma Tumor , 2021, IEEE Transactions on Instrumentation and Measurement.

[17]  Gustavo Marrero Callicó,et al.  Hyperspectral Imaging for Glioblastoma Surgery: Improving Tumor Identification Using a Deep Spectral-Spatial Approach , 2020, Sensors.

[18]  Yuzhen Lu,et al.  Hyperspectral imaging technology for quality and safety evaluation of horticultural products: A review and celebration of the past 20-year progress , 2020 .

[19]  Himar Fabelo,et al.  Novel Methodology for Alzheimer's Disease Biomarker Identification in Plasma using Hyperspectral Microscopy , 2020, 2020 XXXV Conference on Design of Circuits and Integrated Systems (DCIS).

[20]  Matteo Matteucci,et al.  Deep Learning for Land Use and Land Cover Classification Based on Hyperspectral and Multispectral Earth Observation Data: A Review , 2020, Remote. Sens..

[21]  Marcel Bengs,et al.  Spectral-Spatial Recurrent-Convolutional Networks for In-Vivo Hyperspectral Tumor Type Classification , 2020, MICCAI.

[22]  Gustavo M. Callico,et al.  Hyperspectral Superpixel-Wise Glioblastoma Tumor Detection in Histological Samples , 2020 .

[23]  Lena Maier-Hein,et al.  Surgical spectral imaging , 2020, Medical Image Anal..

[24]  Gustavo Marrero Callicó,et al.  Hyperspectral Imaging for the Detection of Glioblastoma Tumor Cells in H&E Slides Using Convolutional Neural Networks , 2020, Sensors.

[25]  Baowei Fei,et al.  Tumor detection of the thyroid and salivary glands using hyperspectral imaging and deep learning. , 2020, Biomedical optics express.

[26]  Gustavo Marrero Callicó,et al.  Hyperspectral imaging and deep learning for the detection of breast cancer cells in digitized histological images , 2020, Medical Imaging: Digital Pathology.

[27]  Gustavo Marrero Callicó,et al.  Conditional generative adversarial network for synthesizing hyperspectral images of breast cancer cells from digitized histology , 2020, Medical Imaging: Digital Pathology.

[28]  Giovanni Danese,et al.  Towards Real-Time Computing of Intraoperative Hyperspectral Imaging for Brain Cancer Detection Using Multi-GPU Platforms , 2020, IEEE Access.

[29]  Artin,et al.  Hyperspectral and multispectral imaging in digital and computational pathology: a systematic review , 2020 .

[30]  Baowei Fei,et al.  Hyperspectral imaging in medical applications , 2020 .

[31]  Hans Kristian Bø,et al.  Intraoperative 3D ultrasound-guided resection of diffuse low-grade gliomas: radiological and clinical results. , 2020, Journal of neurosurgery.

[32]  W. Stummer,et al.  The Use of 5-Aminolevulinic Acid in Low-Grade Glioma Resection: A Systematic Review. , 2019, Operative neurosurgery.

[33]  Gustavo Marrero Callicó,et al.  Most Relevant Spectral Bands Identification for Brain Cancer Detection Using Hyperspectral Imaging , 2019, Sensors.

[34]  Martin T. Halicek,et al.  Hyperspectral Imaging of Head and Neck Squamous Cell Carcinoma for Cancer Margin Detection in Surgical Specimens from 102 Patients Using Deep Learning , 2019, Cancers.

[35]  Samuel Ortega,et al.  Hyperspectral imaging for head and neck cancer detection: specular glare and variance of the tumor margin in surgical specimens , 2019, Journal of medical imaging.

[36]  Christiaan Perneel,et al.  Hypersectral Imaging for Military and Security Applications: Combining Myriad Processing and Sensing Techniques , 2019, IEEE Geoscience and Remote Sensing Magazine.

[37]  Baowei Fei,et al.  In-Vivo and Ex-Vivo Tissue Analysis through Hyperspectral Imaging Techniques: Revealing the Invisible Features of Cancer , 2019, Cancers.

[38]  C. Delmaire,et al.  High-field intraoperative MRI and glioma surgery: results after the first 100 consecutive patients , 2019, Acta Neurochirurgica.

[39]  Sebastien Ourselin,et al.  Intraoperative multispectral and hyperspectral label‐free imaging: A systematic review of in vivo clinical studies , 2019, Journal of biophotonics.

[40]  Jon Atli Benediktsson,et al.  Deep Learning for Hyperspectral Image Classification: An Overview , 2019, IEEE Transactions on Geoscience and Remote Sensing.

[41]  Fred Godtliebsen,et al.  Recent advances in hyperspectral imaging for melanoma detection , 2019, WIREs Computational Statistics.

[42]  Stojan Trajanovski,et al.  Tumor Semantic Segmentation in Hyperspectral Images using Deep Learning , 2019 .

[43]  Guang-Zhong Yang,et al.  In-Vivo Hyperspectral Human Brain Image Database for Brain Cancer Detection , 2019, IEEE Access.

[44]  Gustavo Marrero Callicó,et al.  Surgical aid visualization system for glioblastoma tumor identification based on deep learning and in-vivo hyperspectral images of human patients , 2019, Medical Imaging.

[45]  Gustavo Marrero Callicó,et al.  Deep Learning-Based Framework for In Vivo Identification of Glioblastoma Tumor using Hyperspectral Images of Human Brain , 2019, Sensors.

[46]  Anastasios Koulaouzidis,et al.  Use of Hyperspectral/Multispectral Imaging in Gastroenterology. Shedding Some–Different–Light into the Dark , 2019, Journal of clinical medicine.

[47]  Gustavo Marrero Callicó,et al.  Acceleration of brain cancer detection algorithms during surgery procedures using GPUs , 2018, Microprocess. Microsystems.

[48]  Gustavo Marrero Callicó,et al.  Accelerating the K-Nearest Neighbors Filtering Algorithm to Optimize the Real-Time Classification of Human Brain Tumor in Hyperspectral Images , 2018, Sensors.

[49]  Guang-Zhong Yang,et al.  Spatio-spectral classification of hyperspectral images for brain cancer detection during surgical operations , 2018, PloS one.

[50]  Xu Wang,et al.  Tumor margin classification of head and neck cancer using hyperspectral imaging and convolutional neural networks , 2018, Medical Imaging.

[51]  Jun Li,et al.  Recent Advances on Spectral–Spatial Hyperspectral Image Classification: An Overview and New Guidelines , 2018, IEEE Transactions on Geoscience and Remote Sensing.

[52]  Guang-Zhong Yang,et al.  An Intraoperative Visualization System Using Hyperspectral Imaging to Aid in Brain Tumor Delineation , 2018, Sensors.

[53]  Roberto Sarmiento,et al.  Detecting brain tumor in pathological slides using hyperspectral imaging. , 2018, Biomedical optics express.

[54]  Cengiz Öztireli,et al.  Towards better understanding of gradient-based attribution methods for Deep Neural Networks , 2017, ICLR.

[55]  S. Torp,et al.  Surgical resection versus watchful waiting in low-grade gliomas , 2017, Annals of oncology : official journal of the European Society for Medical Oncology.

[56]  Gustavo M. Callico,et al.  P04.20 Hyperspectral imaging for brain tumour identification and boundaries delineation in real-time during neurosurgical operations , 2017 .

[57]  Guang-Zhong Yang,et al.  Manifold Embedding and Semantic Segmentation for Intraoperative Guidance With Hyperspectral Brain Imaging , 2017, IEEE Transactions on Medical Imaging.

[58]  Jun Li,et al.  Advanced Spectral Classifiers for Hyperspectral Images: A review , 2017, IEEE Geoscience and Remote Sensing Magazine.

[59]  Kathleen Vunckx,et al.  Hyperspectral calibration method For CMOS-based hyperspectral sensors , 2017, OPTO.

[60]  Andy Lambrechts,et al.  Fast and compact internal scanning CMOS-based hyperspectral camera: the Snapscan , 2017, OPTO.

[61]  Charles Blundell,et al.  Simple and Scalable Predictive Uncertainty Estimation using Deep Ensembles , 2016, NIPS.

[62]  Gustavo M. Callico,et al.  Intra-operative hyperspectral imaging for brain tumour detection and delineation: Current progress on the HELICoid project , 2016 .

[63]  Dang Khoa Nguyen,et al.  Intraoperative video-rate hemodynamic response assessment in human cortex using snapshot hyperspectral optical imaging , 2016, Neurophotonics.

[64]  Marcello Picollo,et al.  Reflectance Hyperspectral Imaging for Investigation of Works of Art: Old Master Paintings and Illuminated Manuscripts. , 2016, Accounts of chemical research.

[65]  Roberto Sarmiento,et al.  HELICoiD project: a new use of hyperspectral imaging for brain cancer detection in real-time during neurosurgical operations , 2016, SPIE Commercial + Scientific Sensing and Imaging.

[66]  G. Reifenberger,et al.  The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary , 2016, Acta Neuropathologica.

[67]  Gustavo Marrero Callicó,et al.  Hyperspectral database of pathological in-vitro human brain samples to detect carcinogenic tissues , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[68]  Da-Wen Sun,et al.  Introduction to Hyperspectral Imaging Technology , 2016 .

[69]  Asgeir Bjorgan,et al.  Detection of hypercholesterolemia using hyperspectral imaging of human skin , 2015, European Conference on Biomedical Optics.

[70]  Makoto Hashizume,et al.  Intraoperative visualization of cerebral oxygenation using hyperspectral image data: a two-dimensional mapping method , 2014, International Journal of Computer Assisted Radiology and Surgery.

[71]  André A. Costa,et al.  J-PAS: The Javalambre-Physics of the Accelerated Universe Astrophysical Survey , 2014, 1403.5237.

[72]  Guolan Lu,et al.  Medical hyperspectral imaging: a review , 2014, Journal of biomedical optics.

[73]  S. Jacques Optical properties of biological tissues: a review , 2013, Physics in medicine and biology.

[74]  Mitchel S Berger,et al.  An extent of resection threshold for newly diagnosed glioblastomas. , 2011, Journal of neurosurgery.

[75]  Jörg-Christian Tonn,et al.  Counterbalancing risks and gains from extended resections in malignant glioma surgery: a supplemental analysis from the randomized 5-aminolevulinic acid glioma resection study. Clinical article. , 2011, Journal of neurosurgery.

[76]  R. Guillevin,et al.  Natural history of incidental world health organization grade II gliomas , 2010, Annals of neurology.

[77]  S. Süsstrunk,et al.  SLIC Superpixels ? , 2010 .

[78]  M. Berger,et al.  GLIOMA EXTENT OF RESECTION AND ITS IMPACT ON PATIENT OUTCOME , 2008, Neurosurgery.

[79]  Petra Tatzer,et al.  Industrial application for inline material sorting using hyperspectral imaging in the NIR range , 2005, Real Time Imaging.

[80]  H Stepp,et al.  Intraoperative detection of malignant gliomas by 5-aminolevulinic acid-induced porphyrin fluorescence. , 1998, Neurosurgery.

[81]  W. Stummer,et al.  Technical Principles for Protoporphyrin-IX-Fluorescence Guided Microsurgical Resection of Malignant Glioma Tissue , 1998, Acta Neurochirurgica.

[82]  Fred A. Kruse,et al.  The Spectral Image Processing System (SIPS): Software for integrated analysis of AVIRIS data , 1992 .

[83]  Philip J. Stephens,et al.  Optical spectra of oxy- and deoxyhemoglobin , 1978 .