Proteome research: Complementarity and limitations with respect to the RNA and DNA worlds
暂无分享,去创建一个
[1] M. Perrot,et al. Two‐dimensional gel protein database of Saccharomyces cerevisiae , 1996, Electrophoresis.
[2] M R Wilkins,et al. Cross‐species identification of proteins separated by two‐dimensional gel electrophoresis using matrix‐assisted laser desorption ionisation/time‐of‐flight mass spectrometry and amino acid composition , 1995, Electrophoresis.
[3] J. Celis,et al. Reference points for comparisons of two‐dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions , 1994, Electrophoresis.
[4] A. Galat,et al. Amino acid compositions of proteins and their identities , 1995, Electrophoresis.
[5] M. Mann,et al. Automation of micro‐preparation and enzymatic cleavage of gel electrophoretically separated proteins , 1995, FEBS letters.
[6] Joachim Klose,et al. Two‐dimensional electrophoresis of proteins: An updated protocol and implications for a functional analysis of the genome , 1995, Electrophoresis.
[7] R D Appel,et al. The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis. , 1994, Nucleic acids research.
[8] E. Müller,et al. Identification of human myocardial proteins separated by two‐dimensional electrophoresis using an effective sample preparation for mass spectrometry , 1996, Electrophoresis.
[9] C S McLaughlin,et al. Protein identifications for a Saccharomyces cerevisiae protein database , 1994, Electrophoresis.
[10] D F Hochstrasser,et al. Development of polyacrylamide gels that improve the separation of proteins and their detection by silver staining. , 1988, Analytical biochemistry.
[11] D. Hochstrasser,et al. A nonlinear wide‐range immobilized pH gradient for two‐dimensional electrophoresis and its definition in a relevant pH scale , 1993, Electrophoresis.
[12] H. Hilbert,et al. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. , 1996, Nucleic acids research.
[13] A. Blomberg,et al. Protein expression during exponential growth in 0.7 M NaCl medium of Saccharomyces cerevisiae. , 1996, FEMS microbiology letters.
[14] I. Lefkovits,et al. The amino acid composition of 350 lymphocyte proteins. , 1994, Molecular immunology.
[15] D. Rickwood,et al. The heterogeneity of mouse-chromatin nonhistone proteins as evidenced by two-dimensional polyacrylamide-gel electrophoresis and ion-exchange chromatography. , 1974, European journal of biochemistry.
[16] G. Shaw,et al. Rapid identification of proteins. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[17] R. Fleischmann,et al. Strategies for whole microbial genome sequencing and analysis , 1997, Electrophoresis.
[18] J. Yates,et al. Peer Reviewed: Mining Genomes with MS , 1996 .
[19] P. Righetti,et al. Conventional isoelectric focusing and immobilized pH gradients in ‘macroporous’ polyacrylamide gels , 1993, Electrophoresis.
[20] D. Hochstrasser,et al. Improving the detection of proteins after transfer to polyvinylidene difluoride membranes , 1992, Electrophoresis.
[21] S. Patterson,et al. Comparison of in‐gel and on‐membrane digestion methods at low to sub‐pmol level for subsequent peptide and fragment‐ion mass analysis using matrix‐assisted laser‐desorption/ionization mass spectrometry , 1997, Electrophoresis.
[22] P. Wirth,et al. Staining methods in gel electrophoresis, including the use of multiple detection methods. , 1995, Journal of chromatography. A.
[23] F. Neidhardt,et al. Levels of major proteins of Escherichia coli during growth at different temperatures , 1979, Journal of bacteriology.
[24] T. Hunkapiller,et al. Peptide mass maps: a highly informative approach to protein identification. , 1993, Analytical biochemistry.
[25] H. Leffers,et al. Human cellular protein patterns and their link to genome DNA sequence data: usefulness of two‐dimensional gel electrophoresis and microsequencing , 1991, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[26] A. Shevchenko,et al. Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry , 1996, Nature.
[27] Howard M. Goodman,et al. High resolution two-dimensional electrophoresis of basic as well as acidic proteins , 1977, Cell.
[28] J. Fausnaugh,et al. Amino acid analysis on polyvinylidene difluoride membranes. , 1989, Analytical biochemistry.
[29] F. Neidhardt,et al. Differential induction of heat shock, SOS, and oxidation stress regulons and accumulation of nucleotides in Escherichia coli , 1987, Journal of bacteriology.
[30] S. Leibler,et al. Robustness in simple biochemical networks , 1997, Nature.
[31] P. Haynes,et al. Applications of automated amino acid analysis using 9-fluorenylmethyl chloroformate. , 1991, Journal of chromatography.
[32] T. Benjamin,et al. Micropreparative immobilized pH gradient two‐dimensional electrophoresis in combination with protein microsequencing for the analysis of human liver proteins , 1995, Electrophoresis.
[33] E Fleck,et al. The construction of the World Wide Web‐accessible myocardial two‐dimensional gel electrophoresis protein database “HEART‐2DPAGE”: A practical approach , 1996, Electrophoresis.
[34] F Hillenkamp,et al. Mass spectrometric analysis of blotted proteins after gel electrophoretic separation by matrix‐assisted laser desorption/ionization , 1992, Electrophoresis.
[35] J. Yates,et al. Identifying the major proteome components of Haemophilus influenzae type‐strain NCTC 8143 , 1997, Electrophoresis.
[36] R. Aebersold,et al. High sensitivity identification of proteins by electrospray ionization tandem mass spectrometry: Initial com‐ parison between an ion trap mass spectrometer and a triple quadrupole mass spectrometer , 1997, Electrophoresis.
[37] Olivier Golaz,et al. Federated two‐dimensional electrophoresis database: A simple means of publishing two‐dimensional electrophoresis data , 1996, Electrophoresis.
[38] P. Jenö,et al. Internal sequences from proteins digested in polyacrylamide gels. , 1995, Analytical biochemistry.
[39] M. Wilm,et al. Error-tolerant identification of peptides in sequence databases by peptide sequence tags. , 1994, Analytical chemistry.
[40] M R Wilkins,et al. Identification of proteins by their amino acid composition: An evaluation of the method , 1996, Electrophoresis.
[41] A. Görg,et al. Very alkaline immobilized pH gradients for two‐dimensional electrophoresis of ribosomal and nuclear proteins , 1997, Electrophoresis.
[42] J. Burstin,et al. Analysis of scaling methods to minimize experimental variations in two‐dimensional electrophoresis quantitative data: Application to the comparison of maize inbred lines , 1993, Electrophoresis.
[43] M. Wilm,et al. Analytical properties of the nanoelectrospray ion source. , 1996, Analytical chemistry.
[44] H. Gould,et al. Tissue and species specificity of non-histone chromatin proteins , 1973 .
[45] P. Højrup,et al. Rapid identification of proteins by peptide-mass fingerprinting , 1993, Current Biology.
[46] M. Zivy,et al. Amino acid analysis of proteins separated by two‐dimensional electrophoresis in maize: Isoform detection and function identification , 1996, Electrophoresis.
[47] Ron D. Appel,et al. Protein identification with sequence tags , 1996, Current Biology.
[48] S. Kaufmann,et al. Secreted antigens of Mycobacterium tuberculosis: characterization with T lymphocytes from patients and contacts after two-dimensional separation. , 1992, The Journal of infectious diseases.
[49] S. Kjelleberg,et al. Ribosomes exist in large excess over the apparent demand for protein synthesis during carbon starvation in marine Vibrio sp. strain CCUG 15956 , 1992, Journal of bacteriology.
[50] E. Müller,et al. High‐performance human myocardial two‐dimensional electrophoresis database: Edition 1996 , 1996, Electrophoresis.
[51] Identification of a conditionally essential heat shock protein in Escherichia coli. , 1994, Biochimica et biophysica acta.
[52] J. Vandekerckhove,et al. Protein-electroblotting and -microsequencing strategies in generating protein data bases from two-dimensional gels. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[53] Karl Sigmund,et al. What is life? The next fifty years , 1996, Complex..
[54] James I. Garrels,et al. Yeast Protein database (YPD): a database for the complete proteome of Saccharomyces cerevisiae , 1997, Nucleic Acids Res..
[55] Bruce Futcher,et al. Proteome studies of Saccharomyces cerevisiae: Identification and characterization of abundant proteins , 1997, Electrophoresis.
[56] M. Mann. A shortcut to interesting human genes: peptide sequence tags, expressed-sequence tags and computers. , 1996, Trends in biochemical sciences.
[57] D. Hochstrasser,et al. From Proteins to Proteomes: Large Scale Protein Identification by Two-Dimensional Electrophoresis and Arnino Acid Analysis , 1996, Bio/Technology.
[58] O. Ohara,et al. Towards a proteome project of cyanobacterium Synechocystis sp. strain PCC6803: Linking 130 protein spots with their respective genes , 1997, Electrophoresis.
[59] L. Hjelmeland,et al. Electrophoresis in gels containing zwitterionic groups , 1981 .
[60] P. Højrup,et al. Use of mass spectrometric molecular weight information to identify proteins in sequence databases. , 1993, Biological mass spectrometry.
[61] R D Appel,et al. A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. , 1994, Trends in biochemical sciences.
[62] S. Patterson. From electrophoretically separated protein to identification: strategies for sequence and mass analysis. , 1994, Analytical biochemistry.
[63] H. Leffers,et al. The human keratinocyte two‐dimensional gel protein database: Update 1993 , 1993, Electrophoresis.
[64] E Carafoli,et al. Protein identification in DNA databases by peptide mass fingerprinting , 1994, Protein science : a publication of the Protein Society.
[65] M. Quadroni,et al. Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. , 1996, European journal of biochemistry.
[66] G. Becker,et al. Protein mass spectrometry: applications to analytical biotechnology. , 1995, Journal of chromatography. A.
[67] N. Xuong,et al. A response of protein synthesis to temperature shift in the yeast Saccharomyces cerevisiae. , 1979, Proceedings of the National Academy of Sciences of the United States of America.
[68] E. Müller,et al. Resolution power of two‐dimensional electrophoresis and identification of proteins from gels , 1996, Electrophoresis.
[69] J. Gall,et al. Human Genome Sequencing , 1986, Science.
[70] T. Okumura,et al. Asparaginyl endopeptidase mapping of proteins with subsequent matrix-assisted laser desorption/ionization mass spectrometry. , 1995, Rapid communications in mass spectrometry : RCM.
[71] I. Humphery-Smith,et al. Proteomic ‘contigs’ of Ochrobactrum anthropi, application of extensive pH gradients , 1997, Electrophoresis.
[72] A. Shevchenko,et al. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. , 1996, Analytical chemistry.
[73] F. Neidhardt,et al. Analysis of proteins synthesized by Salmonella typhimurium during growth within a host macrophage , 1993, Journal of bacteriology.
[74] P. Roepstorff,et al. Identification of proteins in polyacrylamide gels by mass spectrometric peptide mapping combined with database search. , 1994, Biological mass spectrometry.
[75] S. Kato,et al. Construction of a human full-length cDNA bank. , 1994, Gene.
[76] F. Lottspeich,et al. Blotting efficiency investigated by using two‐dimensional electrophoresis, hydrophobic membranes and proteins from different sources , 1990, Electrophoresis.
[77] P. Haynes,et al. Amino acid analysis using derivatisation with 9-fluorenylmethyl chloroformate and reversed-phase high-performance liquid chromatography. , 1991, Journal of chromatography.
[78] R. Aebersold,et al. Mass spectrometric approaches for the identification of gel‐separated proteins , 1995, Electrophoresis.
[79] R. Bank,et al. Amino acid analysis by reverse-phase high-performance liquid chromatography: improved derivatization and detection conditions with 9-fluorenylmethyl chloroformate. , 1996, Analytical biochemistry.
[80] D. Rickwood,et al. Gel electrophoresis of proteins: a practical approach , 1981 .
[81] M. Wilkins,et al. Improved high-performance liquid chromatography of amino acids derivatised with 9-fluorenylmethyl chloroformate , 1996 .
[82] P. Roepstorff,et al. Mass spectrometry in protein studies from genome to function. , 1997, Current opinion in biotechnology.
[83] C. McLaughlin,et al. Induction of heat shock proteins and thermotolerance by ethanol in Saccharomycescerevisiae , 1982 .
[84] J. Bernhardt,et al. First steps from a two‐dimensional protein index towards a response‐regulation map for Bacillus subtilis , 1997, Electrophoresis.
[85] Denis Hochstrasser,et al. Immobilized pH gradients in capillary tubes and two‐dimensional gel electrophoresis , 1986 .
[86] A. Chrambach,et al. Electrophoresis and electrofocusing in detergent containing media: A discussion of basic concepts , 1981 .
[87] C. Fenselau,et al. Sequencing electroblotted proteins by tandem mass spectrometry. , 1995, Rapid communications in mass spectrometry : RCM.
[88] B. Barrell,et al. Life with 6000 Genes , 1996, Science.
[89] J. Yates,et al. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database , 1994, Journal of the American Society for Mass Spectrometry.
[90] J. Foster,et al. Global control in Salmonella typhimurium: two-dimensional electrophoretic analysis of starvation-, anaerobiosis-, and heat shock-inducible proteins , 1986, Journal of bacteriology.
[91] K. O. Börnsen,et al. Fast protein sequence determination with matrix-assisted laser desorption and ionization mass spectrometry. , 1991, Rapid communications in mass spectrometry : RCM.
[92] Angelika Görg,et al. Two‐dimensional electrophoresis. The current state of two‐dimensional electrophoresis with immobilized pH gradients , 1988 .
[93] M. Dunn,et al. Proteome analysis: from protein characterization to biological function. , 1997, Trends in cell biology.
[94] G. Gonnet,et al. Probing protein function using a combination of gene knockout and proteome analysis by mass spectrometry , 1997, Electrophoresis.
[95] J. d'Alayer,et al. An agarose-based gel-concentration system for microsequence and mass spectrometric characterization of proteins previously purified in polyacrylamide gels starting at low picomole levels. , 1995, European journal of biochemistry.
[96] S. Burbeck,et al. Identification of polypeptides on two-dimensional electrophoresis gels by amino acid composition. , 1984, Clinical chemistry.
[97] M J MacCoss,et al. Direct database searching with MALDI-PSD spectra of peptides. , 1995, Rapid communications in mass spectrometry : RCM.
[98] M. Perrot,et al. Rapid Identification of Yeast Proteins on Two-dimensional Gels (*) , 1996, The Journal of Biological Chemistry.
[99] D. Weichart,et al. Analysis of starvation conditions that allow for prolonged culturability of Vibrio vulnificus at low temperature. , 1996, Microbiology.
[100] J Taylor,et al. Use of principal components analysis for mutation detection with two–dimensional electrophoresis protein separations , 1992, Electrophoresis.
[101] J. Jarvik,et al. CD-tagging: a new approach to gene and protein discovery and analysis. , 1996, BioTechniques.
[102] F. Lottspeich,et al. Structural characterization of blotting membranes and the influence of membrane parameters for electroblotting and subsequent amino acid sequence analysis of proteins , 1993, Electrophoresis.
[103] Joël Vandekerckhove,et al. Two‐dimensional gel electrophoresis, protein electroblotting and microsequencing: A direct link between proteins and genes , 1990, Electrophoresis.
[104] U. K. Laemmli,et al. Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.
[105] M. Ploug,et al. Determination of amino acid compositions and NH2-terminal sequences of peptides electroblotted onto PVDF membranes from tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis: application to peptide mapping of human complement component C3. , 1989, Analytical biochemistry.
[106] A. Blomberg. Osmoresponsive proteins and functional assessment strategies in Saccharomyces cerevisiae , 1997, Electrophoresis.
[107] F. Neidhardt,et al. The gene‐protein database of Escherichia coli: Edition 5 , 1992, Electrophoresis.
[108] F. Blattner,et al. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. , 1992, Science.
[109] P. Roepstorff,et al. Peptide sequence information derived by partial acid hydrolysis and matrix-assisted laser desorption/ionization mass spectrometry. , 1994, Biological mass spectrometry.
[110] S. Elledge,et al. Gene identification using the yeast two-hybrid system. , 1997, Methods in enzymology.
[111] N. Anderson,et al. The Human Protein Index. , 1981, Clinical chemistry.
[112] P. Edman,et al. A protein sequenator. , 1967, European journal of biochemistry.
[113] D. Pappin,et al. Identification of myocardial proteins from two‐dimensional gels by peptide mass fingerprinting , 1995, Electrophoresis.
[114] R. Brimacombe,et al. Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study. , 1994, Nucleic acids research.
[115] R. Beynon,et al. Purification and characterization of a metallo-endoproteinase from mouse kidney. , 1981, The Biochemical journal.
[116] D. Hochstrasser,et al. The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences , 1993, Electrophoresis.
[117] M. Mann,et al. Developments in matrix-assisted laser desorption/ionization peptide mass spectrometry. , 1996, Current opinion in biotechnology.
[118] A. Tsugita,et al. C-terminal sequencing of protein. A novel partial acid hydrolysis and analysis by mass spectrometry. , 1992, European journal of biochemistry.
[119] F. Neidhardt,et al. Growth rate paradox of Salmonella typhimurium within host macrophages , 1993, Journal of bacteriology.
[120] J. Vohradský,et al. Identification of procaryotic developmental stages by statistical analyses of two‐dimensional gel patterns , 1997, Electrophoresis.
[121] H. Bielka,et al. Preparative two-dimensional polyacrylamide gel electrophoresis of rat liver ribosomal proteins and determination of their amino acid compositions. , 1978, Biochimica et biophysica acta.
[122] P. Matsudaira,et al. Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membranes. , 1987, The Journal of biological chemistry.
[123] D. McDougald,et al. Global analysis of physiological responses in marine bacteria , 1997, Electrophoresis.
[124] A. Burlingame,et al. Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[125] P. Edman,et al. A method for the determination of amino acid sequence in peptides. , 1949, Archives of biochemistry.
[126] J. Foster. Salmonella acid shock proteins are required for the adaptive acid tolerance response , 1991, Journal of bacteriology.
[127] M. Mann,et al. Cell biology and the genome projects a concerted strategy for characterizing multiprotein complexes by using mass spectrometry. , 1997, Trends in cell biology.
[128] S. Cordwell,et al. Characterisation of basic proteins from Spiroplasma melliferum using novel immobilised pH gradients , 1997, Electrophoresis.
[129] D. Hochstrasser,et al. Micropreparative two‐dimensional electrophoresis allowing the separation of samples containing milligram amounts of proteins , 1993, Electrophoresis.
[130] M. Hecker,et al. Heat‐shock and general stress response in Bacillus subtilis , 1996, Molecular microbiology.
[131] P. Guptasarma. Cooperative relaxation of supercoils and periodic transcriptional initiation within polymerase batteries. , 1996, BioEssays : news and reviews in molecular, cellular and developmental biology.
[132] C. Sensen,et al. The Sulfolobus solfataricus P2 genome project , 1996, FEBS letters.
[133] D. Young,et al. Very-high-resolution two-dimensional gel electrophoresis of proteins using giant gels. , 1980, Analytical biochemistry.
[134] S. Fields,et al. Analyzing protein-protein interactions using two-hybrid system. , 1995, Methods in enzymology.
[135] P. Righetti,et al. Membrane protein analysis by isoelectric focusing in immobilized pH gradients , 1985 .
[136] J Taylor,et al. Quantitation of human leukocyte proteins after silver staining: A study with two‐dimensional electrophoresis , 1991, Electrophoresis.
[137] R. Aebersold,et al. Functionalized membrane supports for covalent protein microsequence analysis. , 1991, Analytical biochemistry.
[138] Amos Bairoch,et al. Human liver protein map: A reference database established by microsequencing and gel comparison , 1992, Electrophoresis.
[139] K. Parker,et al. Peptide fingerprints after partial acid hydrolysis: analysis by matrix-assisted laser desorption/ionization mass spectrometry. , 1994, Rapid communications in mass spectrometry : RCM.
[140] J. Yates,et al. Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases. , 1995, Analytical chemistry.
[141] P. Righetti,et al. Isoelectric focusing and non‐isoelectric precipitation of ferritin in immobilized pH gradients: An improved protocol overcoming protein‐matrix interactions , 1987 .
[142] M R Wilkins,et al. Rapid protein identification using N-terminal "sequence tag" and amino acid analysis. , 1996, Biochemical and biophysical research communications.
[143] M J Dunn,et al. The human myocardial two‐dimensional gel protein database: Update 1994 , 1994, Electrophoresis.
[144] P. Argos,et al. Identification of proteins in sequence databases from amino acid composition data. , 1991, Analytical biochemistry.
[145] Eckart Fleck,et al. Protein composition of the human heart: The construction of a myocardial two‐dimensional electrophoresis database , 1994, Electrophoresis.
[146] P. Roepstorff,et al. Identification of transformation sensitive proteins recorded in human two‐dimensional gel protein databases by mass spectrometric peptide mapping alone and in combination with microsequencing , 1994, Electrophoresis.
[147] B. Wittmann-Liebold,et al. Extended N-terminal sequencing of proteins of archaebacterial ribosomes blotted from two-dimensional gels onto glass fiber and poly(vinylidene difluoride) membrane. , 1988, Biochemistry.
[148] Bonnie S. Dunbar,et al. Basic Theories and Principles of Electrophoresis , 1987 .
[149] L. Hood,et al. A gas-liquid solid phase peptide and protein sequenator. , 1981, The Journal of biological chemistry.
[150] J. Yates,et al. Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level. , 1997, Analytical chemistry.
[151] R Kaufmann,et al. Mass spectrometric sequencing of linear peptides by product-ion analysis in a reflectron time-of-flight mass spectrometer using matrix-assisted laser desorption ionization. , 1993, Rapid communications in mass spectrometry : RCM.
[152] A. Podtelejnikov,et al. Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[153] S J Cordwell,et al. Conserved motifs as the basis for recognition of homologous proteins across species boundaries using peptide-mass fingerprinting. , 1997, Journal of mass spectrometry : JMS.
[154] André Goffeau,et al. Molecular fish on chips , 1997, Nature.
[155] P. Guptasarma,et al. Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? , 1995, BioEssays : news and reviews in molecular, cellular and developmental biology.
[156] J. Celis,et al. A qualitative and quantitative protein database approach identifies individual and groups of functionally related proteins that are differentially regulated in simian virus 40 (SV40) transformed human keratinocytes: An overview of the functional changes associated with the transformed phenotype , 1994, Electrophoresis.
[157] A. von Eckardstein,et al. Hybrid isoelectric focusing: Adsorption of proteins onto immobilized pH gradient matrices and desorption by carrier ampholytes , 1987 .
[158] P. Righetti,et al. Effect of 2-mercaptoethanol on pH gradients in isoelectric focusing. , 1982, Journal of biochemical and biophysical methods.
[159] Y. Nakamura,et al. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement). , 1996, DNA research : an international journal for rapid publication of reports on genes and genomes.
[160] J. Klose,et al. An attempt to resolve all the various proteins in a single human cell type by two-dimensional electrophoresis: I. Extraction of all cell proteins. , 1984, Clinical chemistry.
[161] J. Shively,et al. Automated carboxy-terminal sequence analysis of polypeptides containing C-terminal proline. , 1995, Analytical biochemistry.
[162] T. Littlejohn,et al. Peptide‐mass fingerprinting and the ideal covering set for protein characterisation , 1997, Electrophoresis.
[163] G. L. Peterson. [12] Determination of total protein , 1983 .
[164] A. Cornish-Bowden. Assessment of protein sequence identity from amino acid composition data. , 1977, Journal of theoretical biology.
[165] E Gianazza,et al. Isoelectric focusing in immobilized pH gradients: principle, methodology and some applications. , 1982, Journal of biochemical and biophysical methods.
[166] A. Moir,et al. Proteome of Salmonella typhimurium SL1344: identification of novel abundant cell envelope proteins and assignment to a two-dimensional reference map , 1996, Journal of bacteriology.
[167] P. Slonimski,et al. Two‐Dimensional protein map of Saccharomyces cerevisiae: Construction of a gene–protein index , 1995, Yeast.
[168] D. Hochstrasser,et al. The yeast SWISS‐2DPAGE database , 1996, Electrophoresis.
[169] R. Fleischmann,et al. The Minimal Gene Complement of Mycoplasma genitalium , 1995, Science.
[170] Guy Bauw,et al. A two‐dimensional gel protein database of noncultured total normal human epidermal keratinocytes: Identification of proteins strongly up‐regulated in psoriatic epidermis , 1990, Electrophoresis.
[171] R. Nowak. Entering the Postgenome Era , 1995, Science.
[172] "Colored" noise waveforms and quadrupole excitation for the dynamic range expansion of Fourier transform ion cyclotron resonance mass spectrometry. , 1996, Analytical chemistry.
[173] P. Cash,et al. Development of a Haemophilus two‐dimensional protein database , 1997, Electrophoresis.
[174] N G Anderson,et al. Twenty years of two‐dimensional electrophoresis: Past, present and future , 1996, Electrophoresis.
[175] S. Cordwell,et al. Proteome analysis of Spiroplasma melliferum (A56) and protein characterisation across species boundaries , 1997, Electrophoresis.
[176] B. Alberts,et al. Enhancement of bacteriophage T4 late transcription by components of the T4 DNA replication apparatus. , 1989, Science.
[177] D. Hochstrasser,et al. Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. , 1996, Biotechnology & genetic engineering reviews.
[178] Peer Bork,et al. Exploring the Mycoplasma capricolum genome: a minimal cell reveals its physiology , 1995, Molecular microbiology.
[179] Gregory D. Schuler,et al. ESTablishing a human transcript map , 1995, Nature Genetics.
[180] P. Lemkin. Comparing two‐dimensional electrophoretic gel images across the Internet , 1997, Electrophoresis.
[181] A. Cornish-Bowden,et al. How reliably do amino acid composition comparisons predict sequence similarities between proteins? , 1979, Journal of theoretical biology.
[182] M. Stolowitz. Chemical protein sequencing and amino acid analysis. , 1993, Current opinion in biotechnology.
[183] P Vincens,et al. Two-dimensional electrophoresis computerized processing. , 1988, The International journal of biochemistry.
[184] F. Neidhardt,et al. Proteins induced by anaerobiosis in Escherichia coli , 1983, Journal of bacteriology.
[185] E. Schrödinger. What is life? : the physical aspect of the living cell , 1944 .
[186] P. Cash,et al. Characterisation of Haemophilus influenzae proteins by two‐dimensional gel electrophoresis , 1995, Electrophoresis.
[187] P. Moughan,et al. Correction for amino acid loss during acid hydrolysis of a purified protein. , 1996, Analytical biochemistry.
[188] M R Wilkins,et al. Large-scale amino-acid analysis for proteome studies. , 1996, Journal of chromatography. A.
[189] P. Jungblut,et al. Protein analysis on a genomic scale. , 1995, Journal of biotechnology.
[190] S. Komatsu,et al. Deblocking and subsequent microsequence analysis of N alpha-blocked proteins electroblotted onto PVDF membrane. , 1992, Journal of Biochemistry (Tokyo).
[191] B. Dujon. The yeast genome project: what did we learn? , 1996, Trends in genetics : TIG.
[192] P. Blackshear,et al. Giant two‐dimensional gel electrophoresis: Methodological update and comparison with intermediate‐format gel systems , 1990, Electrophoresis.
[193] G. Gonnet,et al. Protein identification by mass profile fingerprinting. , 1993, Biochemical and biophysical research communications.
[194] M. Mann,et al. Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[195] T D Wood,et al. Sequence tag identification of intact proteins by matching tanden mass spectral data against sequence data bases. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[196] P Ferrara,et al. In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis. , 1992, Analytical biochemistry.
[197] S. Nakagawa,et al. Direct amino acid analysis of proteins electroblotted onto polyvinylidene difluoride membrane from sodium dodecyl sulfate-polyacrylamide gel. , 1989, Analytical biochemistry.
[198] B. Dunbar. Two-Dimensional Electrophoresis and Immunological Techniques , 1987, Springer US.
[199] T. Nyström,et al. Survival, stress resistance, and alterations in protein expression in the marine vibrio sp. strain S14 during starvation for different individual nutrients , 1992, Applied and environmental microbiology.
[200] J. Cottrell,et al. Sample immobilization protocols for matrix-assisted laser-desorption mass spectrometry. , 1992, Rapid communications in mass spectrometry : RCM.
[201] D. Pappin,et al. Peptide ladder sequencing by mass spectrometry using a novel, volatile degradation reagent. , 1994, Rapid communications in mass spectrometry : RCM.
[202] J Taylor,et al. Mouse liver protein database: A catalog of proteins detected by two‐dimensional gel electrophoresis , 1992, Electrophoresis.
[203] F. Neidhardt,et al. Adaptation of Escherichia coli to the uncoupler of oxidative phosphorylation 2,4-dinitrophenol , 1993, Journal of bacteriology.
[204] H. Schägger,et al. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. , 1987, Analytical biochemistry.
[205] R. Aebersold,et al. High-yield recovery of electroblotted proteins and cleavage fragments from a cationic polyvinylidene fluoride-based membrane. , 1992, Analytical biochemistry.
[206] E. Geiduschek,et al. Old phage, new insights: two recently recognized mechanisms of transcriptional regulation in bacteriophage T4 development. , 1995, FEMS microbiology letters.
[207] Amos Bairoch,et al. Plasma and red blood cell protein maps: Update 1993 , 1993, Electrophoresis.
[208] A. Burlingame,et al. Mass spectrometric and Edman sequencing of lipocortin I isolated by two-dimensional SDS/PAGE of human melanoma lysates. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[209] S. Patterson,et al. Matrix‐assisted laser‐desorption/ionization mass spectrometric approaches for the identification of gel‐separated proteins in the 5–50 pmol range , 1995, Electrophoresis.
[210] F. Neidhardt,et al. Global analysis of proteins synthesized during phosphorus restriction in Escherichia coli , 1996, Journal of bacteriology.
[211] J. Klose,et al. Identification of tissue proteins by amino acid analysis after purification by two-dimensional electrophoresis , 1992, Journal of protein chemistry.
[212] C. Hutchison,et al. A survey of the Mycoplasma genitalium genome by using random sequencing , 1993, Journal of bacteriology.
[213] Wayne F. Patton,et al. Development of a dedicated two-dimensional gel electrophoresis system that provides optimal pattern reproducibility and polypeptide resolution. , 1990, BioTechniques.
[214] Analytical and micropreparative two-dimensional electrophoresis of proteins , 1991 .
[215] P. Righetti,et al. On the computational approach to immobilized pH gradients , 1991, Electrophoresis.
[216] A. Helenius,et al. Solubilization of membranes by detergents. , 1975, Biochimica et biophysica acta.
[217] R. Aebersold,et al. Protein identification by solid phase microextraction—capillary zone electrophoresis—microelectrospray—tandem mass spectrometry , 1996, Nature Biotechnology.
[218] C. Higgins. Stability and degradation of mRNA. , 1991, Current opinion in cell biology.
[219] F. Neidhardt,et al. Ribosomes as sensors of heat and cold shock in Escherichia coli. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[220] C. O'Connor,et al. The proteome of Salmonella enterica serovar typhimurium: Current progress on its determination and some applications , 1997, Electrophoresis.
[221] F. Lottspeich,et al. Ultraviolet matrix assisted laser desorption ionization‐mass spectrometry of electroblotted proteins , 1996, Electrophoresis.
[222] S. Fields,et al. Protein-protein interactions: methods for detection and analysis , 1995, Microbiological reviews.
[223] U. Hobohm,et al. A sequence property approach to searching protein databases. , 1995, Journal of molecular biology.
[224] J Vandekerckhove,et al. Microsequences of 145 proteins recorded in the two‐dimensional gel protein database of normal human epidermal keratinocytes , 1992, Electrophoresis.
[225] F. Neidhardt,et al. Induction of proteins in response to low temperature in Escherichia coli , 1987, Journal of bacteriology.
[226] M. Perrot,et al. Identification of proteins of the yeast protein map using genetically manipulated strains and peptide‐mass fingerprinting , 1996, Yeast.
[227] D. Israeli,et al. Isolation of 10 differentially expressed cDNAs in p53-induced apoptosis: activation of the vertebrate homologue of the drosophila seven in absentia gene. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[228] R. Fleischmann,et al. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. , 1995, Nature.
[229] I. Humphery-Smith,et al. ‘Proteomic contigs’ of Mycobacterium tuberculosis and Mycobacterium bovis (BCG) using novel immobilised pH gradients , 1997, Electrophoresis.
[230] A. Galat,et al. Convergence of amino acid compositions of certain groups of proteins aids in their identification on two‐dimensional electrophoresis gels , 1997, Electrophoresis.
[231] J. Vandekerckhove,et al. Microsequencing of proteins recorded in human two‐dimensional gel protein databases , 1991, Electrophoresis.
[232] A human myocardial two‐dimensional electrophoresis database: Protein characterisation by microsequencing and immunoblotting , 1992, Electrophoresis.
[233] S. Dekio,et al. Amino Acid Compositions of Human Hair Fibrous Protein Components Purified with Two‐dimensional Electrophoresis , 1989, The Journal of dermatology.
[234] J R Yates,et al. Protein sequencing by tandem mass spectrometry. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[235] J. Seilhamer,et al. A comparison of selected mRNA and protein abundances in human liver , 1997, Electrophoresis.
[236] R. Fleischmann,et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.
[237] J. Yates,et al. Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. , 1995, Analytical chemistry.
[238] F. Neidhardt,et al. Escherichia coli proteome analysis using the gene‐protein database , 1997, Electrophoresis.
[239] P. Kahn. From Genome to Proteome: Looking at a Cell's Proteins , 1995 .
[240] C. Watanabe,et al. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[241] Jiří Vohradský,et al. Adaptive classification of two‐dimensional gel electrophoretic spot patterns by neural networks and cluster analysis , 1997, Electrophoresis.
[242] U. Hellman,et al. Improvement of an "In-Gel" digestion procedure for the micropreparation of internal protein fragments for amino acid sequencing. , 1995, Analytical biochemistry.
[243] T. Rabilloud. A comparison between low background silver diammine and silver nitrate protein stains , 1992, Electrophoresis.
[244] M. Wilkins,et al. Progress with gene‐product mapping of the Mollicutes: Mycoplasma genitalium , 1995, Electrophoresis.
[245] M J Dunn,et al. Coelectrophoresis of cardiac tissue from human, dog, rat and mouse: Towards the establishment of an integrated two‐dimensional protein database , 1995, Electrophoresis.
[246] H. Morris. Research on peptides and glycopeptides , 1979, Philosophical Transactions of the Royal Society of London. Series A, Mathematical and Physical Sciences.
[247] W. Gilbert,et al. ISOLATION OF THE LAC REPRESSOR , 1966, Proceedings of the National Academy of Sciences of the United States of America.
[248] C Sander,et al. Amino acid analysis and protein database compositional search as a rapid and inexpensive method to identify proteins. , 1994, Analytical biochemistry.
[249] Katherine B. Williams,et al. A two‐dimensional electrophoresis database of human breast epithelial cell proteins , 1997, Electrophoresis.
[250] R Kaufmann,et al. Peptide sequencing by matrix-assisted laser-desorption mass spectrometry. , 1992, Rapid communications in mass spectrometry : RCM.
[251] P. O’Farrell. High resolution two-dimensional electrophoresis of proteins. , 1975, The Journal of biological chemistry.
[252] A. Görg,et al. Proteome analysis of Saccharomyces cerevisiae: A methodological outline , 1997, Electrophoresis.
[253] E. Müller,et al. Identification of human myocardial proteins separated by two‐dimensional electrophoresis with matrix‐assisted laser desorption/ionization mass spectrometry , 1996, Electrophoresis.
[254] Angelika Görg,et al. Two-dimensional electrophoresis , 1991 .
[255] T R Hughes,et al. Reverse transcriptase motifs in the catalytic subunit of telomerase. , 1997, Science.
[256] S. Cordwell,et al. Evaluation of algorithms used for cross‐species proteome characterisation , 1997, Electrophoresis.
[257] F. H. Schmidt,et al. The role of mRNA and protein stability in gene expression , 1989, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[258] C. Adessi,et al. Improvement of the solubilization of proteins in two‐dimensional electrophoresis with immobilized pH gradients , 2006, Electrophoresis.
[259] I. Humphery-Smith,et al. Polypeptide cartography of Spiroplasma taiwanense , 1994, Electrophoresis.
[260] The prediction of repetitive protein sequences from amino acid compositions. , 1984, The Biochemical journal.
[261] S. Engelmann,et al. Analysis of the induction of general stress proteins of Bacillus subtilis. , 1994, Microbiology.
[262] Anders Blomberg,et al. Interlaboratory reproducibility of yeast protein patterns analyzed by immobilized pH gradient two‐dimensional gel electrophoresis , 1995, Electrophoresis.
[263] A. Arkin,et al. Stochastic mechanisms in gene expression. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[264] L. Hood,et al. Internal amino acid sequence analysis of proteins separated by one- or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[265] A Bairoch,et al. Two‐dimensional gel electrophoresis of Escherichia coli homogenates: The Escherichia coli SWISS‐2DPAGE database , 1996, Electrophoresis.
[266] J R Yates,et al. Protein structure analysis by mass spectrometry. , 1996, Methods in enzymology.
[267] A. Bensadoun,et al. Assay of proteins in the presence of interfering materials. , 1976, Analytical biochemistry.
[268] Richard C. Strohman,et al. The coming Kuhnian revolution in biology , 1997, Nature Biotechnology.
[269] M Wilm,et al. Electrospray mass spectrometry for protein characterization. , 1995, Trends in biochemical sciences.
[270] D. Young. Advantages of separations on "giant" two-dimensional gels for detection of physiologically relevant changes in the expression of protein gene-products. , 1984, Clinical chemistry.
[271] George M. Church,et al. Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K‐12 , 1997, Electrophoresis.
[272] G. Scheele,et al. Two-dimensional gel analysis of soluble proteins. Charaterization of guinea pig exocrine pancreatic proteins. , 1975, The Journal of biological chemistry.
[273] D. Parmelee,et al. The rat liver epithelial (RLE) cell nuclear protein database , 1993, Electrophoresis.
[274] L. Vuillard,et al. Silver-staining of proteins in polyacrylamide gels: a general overview. , 1994, Cellular and molecular biology.
[275] J. Foster. The acid tolerance response of Salmonella typhimurium involves transient synthesis of key acid shock proteins , 1993, Journal of bacteriology.
[276] Michele Kirchner,et al. Peptide-mass profiles of polyvinylidene difluoride-bound proteins by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in the presence of nonionic detergents. , 1996, Analytical biochemistry.
[277] J. Yates,et al. The quadrupole ion trap mass spectrometer--a small solution to a big challenge. , 1997, Analytical biochemistry.
[278] A Bairoch,et al. Human liver protein map: Update 1993 , 1993, Electrophoresis.
[279] Akira Tsugita,et al. Workshop on two‐dimensional gel protein databases , 1992, Electrophoresis.
[280] C. Eckerskorn,et al. Enhanced in situ gel digestion of electrophoretically separated proteins with automated peptide elution onto mini reversed‐phase columns , 1996, Electrophoresis.
[281] M. Van Montagu,et al. Protein-blotting on Polybrene-coated glass-fiber sheets. A basis for acid hydrolysis and gas-phase sequencing of picomole quantities of protein previously separated on sodium dodecyl sulfate/polyacrylamide gel. , 1985, European journal of biochemistry.