Towards integrative gene functional similarity measurement
暂无分享,去创建一个
Yadong Wang | Jin Chen | Jiajie Peng | Jiajie Peng | Yadong Wang | Jin Chen
[1] Rupert G. Miller. Simultaneous Statistical Inference , 1966 .
[2] Matthew O. Ward,et al. XmdvTool: integrating multiple methods for visualizing multivariate data , 1994, Proceedings Visualization '94.
[3] David W. Conrath,et al. Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy , 1997, ROCLING/IJCLCLP.
[4] Göran Goldkuhl,et al. Method intergration: the need for a learning perspective , 1998, IEE Proc. Softw..
[5] Dekang Lin,et al. An Information-Theoretic Definition of Similarity , 1998, ICML.
[6] Philip Resnik,et al. Semantic Similarity in a Taxonomy: An Information-Based Measure and its Application to Problems of Ambiguity in Natural Language , 1999, J. Artif. Intell. Res..
[7] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[8] 中尾 光輝,et al. KEGG(Kyoto Encyclopedia of Genes and Genomes)〔和文〕 (特集 ゲノム医学の現在と未来--基礎と臨床) -- (データベース) , 2000 .
[9] Gene Ontology Consortium. The Gene Ontology (GO) database and informatics resource , 2003 .
[10] C. Claudel-Renard,et al. Enzyme-specific profiles for genome annotation: PRIAM. , 2003, Nucleic acids research.
[11] C. Burge,et al. Prediction of Mammalian MicroRNA Targets , 2003, Cell.
[12] Carole A. Goble,et al. Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation , 2003, Bioinform..
[13] P. Karp. Call for an enzyme genomics initiative , 2004, Genome Biology.
[14] Douglas P. Wiens,et al. MATCH - A Software Package for Robust Profile Matching Using S-Plus , 2004 .
[15] Padhraic Smyth,et al. Analysis and Visualization of Network Data using JUNG , 2005 .
[16] Frank Holstege,et al. Predicting gene function through systematic analysis and quality assessment of high-throughput data , 2005, Bioinform..
[17] Zhiyong Lu,et al. GO Molecular Function Terms Are Predictive of Subcellular Localization , 2004, Pacific Symposium on Biocomputing.
[18] Angel Rubio,et al. Correlation between Gene Expression and GO Semantic Similarity , 2005, TCBB.
[19] D. Nutt,et al. Translocator protein (18kDa): new nomenclature for the peripheral-type benzodiazepine receptor based on its structure and molecular function. , 2006, Trends in pharmacological sciences.
[20] J. J. Díaz-Mejía,et al. A network perspective on the evolution of metabolism by gene duplication , 2007, Genome Biology.
[21] D. Allison,et al. Microarray data analysis: from disarray to consolidation and consensus , 2006, Nature Reviews Genetics.
[22] Thomas Lengauer,et al. A new measure for functional similarity of gene products based on Gene Ontology , 2006, BMC Bioinformatics.
[23] Haiyuan Yu,et al. Developing a similarity measure in biological function space , 2007 .
[24] Zheng Guo,et al. Globally predicting protein functions based on co-expressed protein-protein interaction networks and ontology taxonomy similarities. , 2007, Gene.
[25] Mark Gerstein,et al. Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications , 2007, Bioinform..
[26] Philip S. Yu,et al. A new method to measure the semantic similarity of GO terms , 2007, Bioinform..
[27] Yves A. Lussier,et al. Evaluation of high-throughput functional categorization of human disease genes , 2007, BMC Bioinformatics.
[28] K. Dolinski,et al. Use and misuse of the gene ontology annotations , 2008, Nature Reviews Genetics.
[29] Catia Pesquita,et al. Metrics for GO based protein semantic similarity: a systematic evaluation , 2008, BMC Bioinformatics.
[30] Phillip W. Lord,et al. Semantic Similarity in Biomedical Ontologies , 2009, PLoS Comput. Biol..
[31] David Sánchez,et al. An ontology-based measure to compute semantic similarity in biomedicine , 2011, J. Biomed. Informatics.
[32] Diyuan Yang,et al. An integration strategy to measure enzyme activities for detecting irreversible inhibitors with dimethoate on butyrylcholinesterase as a model , 2011 .
[33] Igor Jurisica,et al. Novel semantic similarity measure improves an integrative approach to predicting gene functional associations , 2013, BMC Systems Biology.
[34] Xiaoyan Liu,et al. Measuring gene functional similarity based on group-wise comparison of GO terms , 2013, Bioinform..
[35] Yadong Wang,et al. Identifying cross-category relations in gene ontology and constructing genome-specific term association networks , 2013, BMC Bioinformatics.
[36] Xiaomei Wu,et al. Improving the Measurement of Semantic Similarity between Gene Ontology Terms and Gene Products: Insights from an Edge- and IC-Based Hybrid Method , 2013, PloS one.