Multi‐task exclusive relationship learning for alzheimer’s disease progression prediction with longitudinal data

HighlightsA relationship induced regularization models the relationship among tasks at different time points for estimating clinical measures based on longitudinal imaging data;An exclusive lasso regularization enables partial group structure feature selection among tasks;Extensive experiments on both synthetic and real datasets demonstrate the effectiveness of the proposed method. Graphical abstract Figure. No Caption available. ABSTRACT Alzheimer’s disease (AD) is a neurodegenerative disorder characterized by progressive impairment of memory and other cognitive functions. Currently, many multi‐task learning approaches have been proposed to predict the disease progression at the early stage using longitudinal data, with each task corresponding to a particular time point. However, the underlying association among different time points in disease progression is still under‐explored in previous studies. To this end, we propose a multi‐task exclusive relationship learning model to automatically capture the intrinsic relationship among tasks at different time points for estimating clinical measures based on longitudinal imaging data. The proposed method can select the most discriminative features for different tasks and also model the intrinsic relatedness among different time points, by utilizing an exclusive lasso regularization and a relationship induced regularization. Specifically, the exclusive lasso regularization enables partial group structure feature selection among the longitudinal data, while the relationship induced regularization efficiently introduces the relationship information from data to guide knowledge transfer. We further develop an efficient optimization algorithm to solve the proposed objective function. Extensive experiments on both synthetic and real datasets demonstrate the effectiveness of our proposed method. In comparison with several state‐of‐the‐art methods, our proposed method can achieve promising performance for cognitive status prediction and also can help discover disease‐related biomarkers.

[1]  Shannon L. Risacher,et al.  High-Order Multi-Task Feature Learning to Identify Longitudinal Phenotypic Markers for Alzheimer's Disease Progression Prediction , 2012, NIPS.

[2]  Dit-Yan Yeung,et al.  Multi-Task Learning using Generalized t Process , 2010, AISTATS.

[3]  Xiaoying Wu,et al.  Structural and functional biomarkers of prodromal Alzheimer's disease: A high-dimensional pattern classification study , 2008, NeuroImage.

[4]  Daoqiang Zhang,et al.  Temporally Constrained Group Sparse Learning for Longitudinal Data Analysis in Alzheimer's Disease , 2017, IEEE Transactions on Biomedical Engineering.

[5]  Ying Wang,et al.  High-dimensional Pattern Regression Using Machine Learning: from Medical Images to Continuous Clinical Variables However, Support Vector Regression Has Some Disadvantages That Become Especially , 2022 .

[6]  A. Convit,et al.  Atrophy of the medial occipitotemporal, inferior, and middle temporal gyri in non-demented elderly predict decline to Alzheimer’s disease☆ , 2000, Neurobiology of Aging.

[7]  Massimiliano Pontil,et al.  Convex multi-task feature learning , 2008, Machine Learning.

[8]  Rich Caruana,et al.  Multitask Learning , 1998, Encyclopedia of Machine Learning and Data Mining.

[9]  Daoqiang Zhang,et al.  Pairwise Constraint-Guided Sparse Learning for Feature Selection , 2016, IEEE Transactions on Cybernetics.

[10]  Shuicheng Yan,et al.  Towards multi-semantic image annotation with graph regularized exclusive group lasso , 2011, MM '11.

[11]  Rich Caruana,et al.  Multitask Learning , 1997, Machine Learning.

[12]  Stephen M. Smith,et al.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm , 2001, IEEE Transactions on Medical Imaging.

[13]  Daoqiang Zhang,et al.  Feature selection with effective distance , 2016, Neurocomputing.

[14]  Dit-Yan Yeung,et al.  A Convex Formulation for Learning Task Relationships in Multi-Task Learning , 2010, UAI.

[15]  Daoqiang Zhang,et al.  Joint Binary Classifier Learning for ECOC-Based Multi-Class Classification , 2016, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[16]  Alan C. Evans,et al.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data , 1998, IEEE Transactions on Medical Imaging.

[17]  Kathryn Ziegler-Graham,et al.  Forecasting the global burden of Alzheimer’s disease , 2007, Alzheimer's & Dementia.

[18]  G. Paxinos,et al.  Atlas of the Human Brain , 2000 .

[19]  Thomas G. Dietterich Approximate Statistical Tests for Comparing Supervised Classification Learning Algorithms , 1998, Neural Computation.

[20]  C. Jack,et al.  MRI and CSF biomarkers in normal, MCI, and AD subjects , 2009, Neurology.

[21]  Xuelong Li,et al.  Modeling Disease Progression via Multisource Multitask Learners: A Case Study With Alzheimer’s Disease , 2017, IEEE Transactions on Neural Networks and Learning Systems.

[22]  Li Shen,et al.  Cortical surface biomarkers for predicting cognitive outcomes using group l 2,1 norm , 2015, Neurobiology of Aging.

[23]  Isidro Ferrer,et al.  Morphological alterations to neurons of the amygdala and impaired fear conditioning in a transgenic mouse model of Alzheimer's disease , 2009, The Journal of pathology.

[24]  Jiayu Zhou,et al.  A multi-task learning formulation for predicting disease progression , 2011, KDD.

[25]  刘明霞 View-centralized multi-atlas classification for Alzheimer's disease diagnosis , 2015 .

[26]  Daoqiang Zhang,et al.  Multimodal classification of Alzheimer's disease and mild cognitive impairment , 2011, NeuroImage.

[27]  Dinggang Shen,et al.  Multi‐channel multi‐scale fully convolutional network for 3D perivascular spaces segmentation in 7T MR images , 2018, Medical Image Anal..

[28]  R. Coleman,et al.  Neuroimaging and early diagnosis of Alzheimer disease: a look to the future. , 2003, Radiology.

[29]  Trevor Hastie,et al.  The Elements of Statistical Learning , 2001 .

[30]  Takeo Watanabe,et al.  A small number of abnormal brain connections predicts adult autism spectrum disorder , 2016, Nature Communications.

[31]  Qian Xu,et al.  Probabilistic Multi-Task Feature Selection , 2010, NIPS.

[32]  Daoqiang Zhang,et al.  Predicting Future Clinical Changes of MCI Patients Using Longitudinal and Multimodal Biomarkers , 2012, PloS one.

[33]  Dinggang Shen,et al.  Hierarchical Fully Convolutional Network for Joint Atrophy Localization and Alzheimer's Disease Diagnosis Using Structural MRI , 2020, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[34]  Dinggang Shen,et al.  Synthesizing Missing PET from MRI with Cycle-consistent Generative Adversarial Networks for Alzheimer's Disease Diagnosis , 2018, MICCAI.

[35]  Jiayu Zhou,et al.  Modeling disease progression via multi-task learning , 2013, NeuroImage.

[36]  Clifford R. Jack,et al.  Predicting Clinical Scores from Magnetic Resonance Scans in Alzheimer's Disease , 2010, NeuroImage.

[37]  Shannon L. Risacher,et al.  From phenotype to genotype: an association study of longitudinal phenotypic markers to Alzheimer's disease relevant SNPs , 2012, Bioinform..

[38]  Chih-Jen Lin,et al.  LIBSVM: A library for support vector machines , 2011, TIST.

[39]  Mark Mühlau,et al.  Grey-matter atrophy in Alzheimer's disease is asymmetric but not lateralized. , 2011, Journal of Alzheimer's disease : JAD.

[40]  A. Delacourte,et al.  The biochemical pathway of neurofibrillary degeneration in aging and Alzheimer’s disease , 1999, Neurology.

[41]  Daoqiang Zhang,et al.  Identification of MCI individuals using structural and functional connectivity networks , 2012, NeuroImage.

[42]  K. Davis,et al.  A new rating scale for Alzheimer's disease. , 1984, The American journal of psychiatry.

[43]  Dinggang Shen,et al.  Joint estimation of multiple clinical variables of neurological diseases from imaging patterns , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[44]  Jieping Ye,et al.  Multi-Task Feature Learning Via Efficient l2, 1-Norm Minimization , 2009, UAI.

[45]  Shannon L. Risacher,et al.  Identifying quantitative trait loci via group-sparse multitask regression and feature selection: an imaging genetics study of the ADNI cohort , 2012, Bioinform..

[46]  Vikas Singh,et al.  Predictive markers for AD in a multi-modality framework: An analysis of MCI progression in the ADNI population , 2011, NeuroImage.

[47]  Daoqiang Zhang,et al.  Temporally-Constrained Group Sparse Learning for Longitudinal Data Analysis , 2012, MICCAI.

[48]  D. Louis Collins,et al.  Relating one-year cognitive change in mild cognitive impairment to baseline MRI features , 2009, NeuroImage.

[49]  Rong Jin,et al.  Exclusive Lasso for Multi-task Feature Selection , 2010, AISTATS.

[50]  Dong Ni,et al.  Longitudinal Analysis for Disease Progression via Simultaneous Multi-Relational Temporal-Fused Learning , 2017, Front. Aging Neurosci..

[51]  Daoqiang Zhang,et al.  Multi-modal multi-task learning for joint prediction of multiple regression and classification variables in Alzheimer's disease , 2012, NeuroImage.

[52]  H. Braak,et al.  Neuropathological stageing of Alzheimer-related changes , 2004, Acta Neuropathologica.

[53]  Qiang Chen,et al.  Multi-label visual classification with label exclusive context , 2011, 2011 International Conference on Computer Vision.

[54]  R. Sims,et al.  The Correlation between Inflammatory Biomarkers and Polygenic Risk Score in Alzheimer's Disease. , 2017, Journal of Alzheimer's disease : JAD.