A comparative genomics approach for studying ancestral proteins and evolution.
暂无分享,去创建一个
[1] R. Fleischmann,et al. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus , 1997, Nature.
[2] I D Campbell,et al. The structure and function of protein modules. , 1991, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[3] J. Gogarten,et al. Orthologs, paralogs and genome comparisons. , 1999, Current opinion in genetics & development.
[4] P Bork,et al. On the Classification and Evolution of Protein Modules , 1997, Journal of protein chemistry.
[5] M. Riley,et al. Interim report on genomics of Escherichia coli. , 2000, Annual review of microbiology.
[6] Wen-Hsiung Li,et al. Fundamentals of molecular evolution , 1990 .
[7] E. Koonin,et al. DNA-binding proteins and evolution of transcription regulation in the archaea. , 1999, Nucleic acids research.
[8] G. Gonnet,et al. Exhaustive matching of the entire protein sequence database. , 1992, Science.
[9] P. Christen,et al. Aminotransferases: demonstration of homology and division into evolutionary subgroups. , 1993, European journal of biochemistry.
[10] M Kanehisa,et al. A comparative analysis of ABC transporters in complete microbial genomes. , 1998, Genome research.
[11] M Kanehisa. Grand challenges in bioinformatics. , 1998, Bioinformatics.
[12] Dr. Susumu Ohno. Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.
[13] P. Bork,et al. Ancient duplication of DNA polymerase inferred from analysis of complete bacterial genomes. , 1996, Trends in biochemical sciences.
[14] M. Berlyn. Linkage Map of Escherichia coli K-12, Edition 10: The Traditional Map , 1998, Microbiology and Molecular Biology Reviews.
[15] M. Riley,et al. Gene products of Escherichia coli: sequence comparisons and common ancestries. , 1995, Molecular biology and evolution.
[16] D. Hughes,et al. Comparison of the complete sequence of the str operon in Salmonella typhimurium and Escherichia coli. , 1992, Gene.
[17] K. Axelsen,et al. Evolution of Substrate Specificities in the P-Type ATPase Superfamily , 1998, Journal of Molecular Evolution.
[18] Xianghong Zhou,et al. A cross-comparison of a large dataset of genes , 2000, Bioinform..
[19] A. Furano. The elongation factor Tu coded by the tufA gene of Escherichia coli K-12 is almost identical to that coded by the tufB gene. , 1977, The Journal of biological chemistry.
[20] Russell F. Doolittle,et al. Microbial genomes opened up , 1998, Nature.
[21] Michael Y. Galperin,et al. Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. , 1999, Genome research.
[22] James R. Brown,et al. Archaea and the prokaryote-to-eukaryote transition. , 1997, Microbiology and molecular biology reviews : MMBR.
[23] Gaston H. Gonnet,et al. Darwin v. 2.0: an interpreted computer language for the biosciences , 2000, Bioinform..
[24] J. Knappe,et al. Pyruvate‐formate‐lyase‐deactivase and acetyl‐CoA reductase activities of Escherichia coli reside on a polymeric protein particle encoded by adhE , 1991, FEBS letters.
[25] J. Gogarten,et al. Horizontal transfer of ATPase genes--the tree of life becomes a net of life. , 1993, Bio Systems.
[26] H. Schulz,et al. Evidence that the fadB gene of the fadAB operon of Escherichia coli encodes 3-hydroxyacyl-coenzyme A (CoA) epimerase, delta 3-cis-delta 2-trans-enoyl-CoA isomerase, and enoyl-CoA hydratase in addition to 3-hydroxyacyl-CoA dehydrogenase , 1988, Journal of bacteriology.
[27] Eric S. Lander,et al. Journey to the Center of Biology , 2000, Science.
[28] M. O. Dayhoff,et al. Atlas of protein sequence and structure , 1965 .
[29] E. Koonin,et al. Eukaryotic transcription regulators derive from ancient enzymatic domains , 1998, Current Biology.
[30] E. Koonin,et al. The Impact of Comparative Genomics on Our Understanding of Evolution , 2000, Cell.
[31] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[32] M. Riley,et al. Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the module. , 1997, Journal of molecular biology.
[33] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[34] A. Mushegian,et al. The minimal genome concept. , 1999, Current opinion in genetics & development.
[35] E. Pennisi. Is It Time to Uproot the Tree of Life? , 1999, Science.
[36] G. Müller-Newen,et al. Site-directed mutagenesis of putative active-site amino acid residues of 3,2-trans-enoyl-CoA isomerase, conserved within the low-homology isomerase/hydratase enzyme family. , 1993, Biochemistry.
[37] C. Sander,et al. Computational comparisons of model genomes. , 1996, Trends in biotechnology.
[38] K. Axelsen,et al. Evolution of P-type ATPases. , 1998, Biochimica et biophysica acta.
[39] R. L. Charlebois. Organization of the Prokaryotic Genome , 1999 .
[40] E V Koonin,et al. Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics. , 1996, Current opinion in genetics & development.
[41] W. Fitch. Distinguishing homologous from analogous proteins. , 1970, Systematic zoology.
[42] F. Neidhart. Escherichia coli and Salmonella. , 1996 .
[43] M. Riley,et al. Widespread protein sequence similarities: origins of Escherichia coli genes , 1995, Journal of bacteriology.
[44] G. B. Golding,et al. The mosaic nature of the eukaryotic nucleus. , 1998, Molecular biology and evolution.
[45] M. Riley,et al. Divergence of function in sequence-related groups of Escherichia coli proteins. , 2001, Genome research.