Impact of trace element addition on biogas production from food industrial waste--linking process to microbial communities.

Laboratory-scale reactors treating food industry waste were used to investigate the effects of additions of cobalt (Co), nickel/molybdenum/boron (Ni/Mo/B) and selenium/tungsten (Se/W) on the biogas process and the associated microbial community. The highest methane production (predicted value: 860 mL g(-1) VS) was linked to high Se/W concentrations in combination with a low level of Co. A combination of quantitative real-time PCR of 16S rRNA genes, terminal restriction fragment length polymorphism (T-RFLP) and clone library sequencing was used for the community analysis. The T-RFLP data show a higher diversity for bacteria than for archaea in all the treatments. The most abundant bacterial population (31-55% of the total T-RFLP fragments' intensity) was most closely related to Actinomyces europaeus (94% homology). Two dominant archaeal populations shared 98-99% sequence homology with Methanosarcina siciliae and Methanoculleus bourgensis, respectively. Only limited influence of the trace metal additions was found on the bacterial community composition, with two bacterial populations responding to the addition of a combination of Ni/Mo/B, while the dominant archaeal populations were influenced by the addition of Ni/Mo/B and/or Se/W. The maintenance of methanogenic activity was largely independent of archaeal community composition, suggesting a high degree of functional redundancy in the methanogens of the biogas reactors.

[1]  Å. Nordberg,et al.  Improvement of a grass-clover silage-fed biogas process by the addition of cobalt , 1997 .

[2]  Andreas Tauch,et al.  Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. , 2008, Journal of biotechnology.

[3]  Naryttza N. Diaz,et al.  Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. , 2009, Journal of biotechnology.

[4]  V. O’Flaherty,et al.  Methanogenic population structure in a variety of anaerobic bioreactors. , 2003, FEMS microbiology letters.

[5]  J. Andreesen,et al.  Tungsten, the Surprisingly Positively Acting Heavy Metal Element for Prokaryotes , 2008, Annals of the New York Academy of Sciences.

[6]  E. Casamayor,et al.  Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. , 2002, Environmental microbiology.

[7]  R. Moletta,et al.  Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis. , 2000, Environmental microbiology.

[8]  M. Klocke,et al.  Archaea diversity within a commercial biogas plant utilizing herbal biomass determined by 16S rDNA and mcrA analysis , 2008, Journal of applied microbiology.

[9]  K. Kida,et al.  Effect of dilution rate on structure of a mesophilic acetate-degrading methanogenic community during continuous cultivation. , 2003, Journal of bioscience and bioengineering.

[10]  R. Speece,et al.  Metal Stimulation and Municipal Digester Thermophilic/Mesophilic Activity , 2008 .

[11]  B. Ahring,et al.  Anaerobic digestion of swine manure: Inhibition by ammonia , 1998 .

[12]  Jan Mumme,et al.  Characterization of the methanogenic Archaea within two-phase biogas reactor systems operated with plant biomass. , 2008, Systematic and applied microbiology.

[13]  Å. Nordberg,et al.  Ammonia, a selective agent for methane production by syntrophic acetate oxidation at mesophilic temperature. , 2008, Water science and technology : a journal of the International Association on Water Pollution Research.

[14]  Yaniv Bernstein,et al.  New Threshold and Confidence Estimates for Terminal Restriction Fragment Length Polymorphism Analysis of Complex Bacterial Communities , 2006, Applied and Environmental Microbiology.

[15]  P. Lens,et al.  Induction of cobalt limitation in methanol-fed UASB reactors , 2006 .

[16]  R. Moletta,et al.  Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis , 1997, Applied and environmental microbiology.

[17]  T. Bobik,et al.  Cobalamin (coenzyme B12): synthesis and biological significance. , 1996, Annual review of microbiology.

[18]  V. O’Flaherty,et al.  Reactor performance and microbial community dynamics during anaerobic biological treatment of wastewaters at 16-37 degrees C. , 2004, FEMS microbiology ecology.

[19]  C. Gallert,et al.  Effect of ammonia on the anaerobic degradation of protein by a mesophilic and thermophilic biowaste population , 1998, Applied Microbiology and Biotechnology.

[20]  R. Thauer,et al.  Nickel, cobalt, and molybdenum requirement for growth of Methanobacterium thermoautotrophicum , 1979, Archives of Microbiology.

[21]  Gamze Güngör-Demirci,et al.  Effect of initial COD concentration, nutrient addition, temperature and microbial acclimation on anaerobic treatability of broiler and cattle manure. , 2004, Bioresource technology.

[22]  K. Nagaoka,et al.  Methanoculleus bourgensis, Methanoculleus olentangyi and Methanoculleus oldenburgensis are subjective synonyms. , 2003, International journal of systematic and evolutionary microbiology.

[23]  M. Takashima,et al.  Mineral requirements for methane fermentation , 1990 .

[24]  B. Svensson,et al.  Mesophilic syntrophic acetate oxidation during methane formation in biogas reactors , 1999 .

[25]  D. Boone,et al.  Transfer of Methanogenium bourgense, Methanogenium marisnigri, Methanogenium olentangyi, and Methanogenium thermophilicum to the Genus Methanoculleus gen. nov., Emendation of Methanoculleus marisnigri and Methanogenium, and Description of New Strains of Methanoculleus bourgense and Methanoculleus ma , 1990 .

[26]  Modelling biofilm-modified hydrodynamics in 3D. , 2007, Water science and technology : a journal of the International Association on Water Pollution Research.

[27]  Ann C. Wilkie,et al.  Enhancement of anaerobic methanogenesis from napiergrass by addition of micronutrients , 1986 .

[28]  G. Lettinga,et al.  The influence of ammonium-nitrogen on the specific activity of pelletized methanogenic sludge , 1984 .

[29]  G. Sayler,et al.  Quantitative Molecular Assay for Fingerprinting Microbial Communities of Wastewater and Estrogen-Degrading Consortia , 2005, Applied and Environmental Microbiology.

[30]  K Kida,et al.  Influence of Ni2+ and Co2+ on methanogenic activity and the amounts of coenzymes involved in methanogenesis. , 2001, Journal of bioscience and bioengineering.

[31]  S. Ragsdale,et al.  Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation. , 2008, Biochimica et biophysica acta.

[32]  Tianlun Li,et al.  Insights into networks of functional microbes catalysing methanization of cellulose under mesophilic conditions. , 2009, Environmental microbiology.

[33]  P. Lens,et al.  Effects of trace element addition on volatile fatty acid conversions in anaerobic granular sludge reactors , 2003, Environmental technology.

[34]  Masaharu Ishii,et al.  Dynamic Transition of a Methanogenic Population in Response to the Concentration of Volatile Fatty Acids in a Thermophilic Anaerobic Digester , 2006, Applied and Environmental Microbiology.

[35]  M. Alves,et al.  Detection and quantification of long chain fatty acids in liquid and solid samples and its relevance to understand anaerobic digestion of lipids. , 2009, Bioresource technology.

[36]  M. Sillanpää,et al.  Increased biogas production at wastewater treatment plants through co-digestion of sewage sludge with grease trap sludge from a meat processing plant. , 2009, Bioresource technology.

[37]  H. Gauch,et al.  Analysis of T-RFLP data using analysis of variance and ordination methods: a comparative study. , 2008, Journal of microbiological methods.

[38]  Emile Schiltz,et al.  Two W-containing formate dehydrogenases (CO2-reductases) involved in syntrophic propionate oxidation by Syntrophobacter fumaroxidans. , 2003, European journal of biochemistry.

[39]  M. Collins,et al.  Actinomyces europaeus sp. nov., isolated from human clinical specimens. , 1997, International journal of systematic bacteriology.

[40]  M. Klocke,et al.  Microbial community analysis of a biogas-producing completely stirred tank reactor fed continuously with fodder beet silage as mono-substrate. , 2007, Systematic and applied microbiology.

[41]  P. Börjesson,et al.  Biogas as a resource-efficient vehicle fuel. , 2008, Trends in biotechnology.

[42]  K. Sowers,et al.  Isolation of an aceticlastic strain of Methanosarcina siciliae from marine canyon sediments and emendation of the species description for Methanosarcina siciliae. , 1997, International journal of systematic bacteriology.

[43]  Naryttza N. Diaz,et al.  The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. , 2008, Journal of biotechnology.

[44]  Irini Angelidaki,et al.  Anaerobic thermophilic digestion of manure at different ammonia loads: Effect of temperature , 1994 .

[45]  Fernando G. Fermoso,et al.  Decreased activity of a propionate degrading community in a UASB reactor fed with synthetic medium without molybdenum, tungsten and selenium , 2009 .

[46]  L. Rohlin,et al.  Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. , 2007, Journal of proteome research.

[47]  P. Lens,et al.  Acidification of methanol‐fed anaerobic granular sludge bioreactors by cobalt deprivation: Induction and microbial community dynamics , 2008, Biotechnology and bioengineering.

[48]  K. McMahon,et al.  Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions--II: Microbial population dynamics. , 2001, Water research.

[49]  H. Borén,et al.  Analysis of mono- and diesters of o-phthalic acid by solid-phase extractions with polystyrene-divinylbenzene-based polymers. , 2002, Journal of chromatography. A.

[50]  R. Speece,et al.  Comparative process stability and efficiency of anaerobic digestion; mesophilic vs. thermophilic. , 2002, Water research.

[51]  Suiying Huang,et al.  How Stable Is Stable? Function versus Community Composition , 1999, Applied and Environmental Microbiology.

[52]  Li Yan,et al.  Startup and operation of anaerobic EGSB reactor treating palm oil mill effluent. , 2008, Journal of environmental sciences.

[53]  R. Wolfe,et al.  FORMATION OF METHANE BY BACTERIAL EXTRACTS. , 1963, The Journal of biological chemistry.

[54]  Herbert Pobeheim,et al.  Influence of trace elements on methane formation from a synthetic model substrate for maize silage. , 2010, Bioresource technology.

[55]  Trevor F. Cox,et al.  Nonmetric multidimensional scaling , 2000 .

[56]  N. Mantel The detection of disease clustering and a generalized regression approach. , 1967, Cancer research.

[57]  P. Lens,et al.  Granular sludge in full-scale anaerobic bioreactors: Trace element content and deficiencies , 2006 .

[58]  Lutgarde Raskin,et al.  Microbial population dynamics during start‐up and overload conditions of anaerobic digesters treating municipal solid waste and sewage sludge , 2004, Biotechnology and bioengineering.

[59]  T. Stadtman Discoveries of vitamin B12 and selenium enzymes. , 2002, Annual review of biochemistry.

[60]  K. Clarke Nonmetric multivariate analysis in community‐level ecotoxicology , 1999 .

[61]  S. K. Patidar,et al.  Effect of nutrients on biomass activity in degradation of sulfate laden organics , 2006 .

[62]  M. Bazin,et al.  Microbial population dynamics , 1982 .

[63]  Craig S. Criddle,et al.  Flexible Community Structure Correlates with Stable Community Function in Methanogenic Bioreactor Communities Perturbed by Glucose , 2000, Applied and Environmental Microbiology.

[64]  B. Fathepure Factors Affecting the Methanogenic Activity of Methanothrix soehngenii VNBF , 1987, Applied and environmental microbiology.

[65]  W. D. Murray,et al.  Effects of Nickel, Cobalt, and Molybdenum on Performance of Methanogenic Fixed-Film Reactors , 1981, Applied and environmental microbiology.

[66]  Daryl L. Nielsen,et al.  Ordination and significance testing of microbial community composition derived from terminal restriction fragment length polymorphisms: application of multivariate statistics , 2004, Antonie van Leeuwenhoek.

[67]  A. Eiler,et al.  Flavobacteria Blooms in Four Eutrophic Lakes: Linking Population Dynamics of Freshwater Bacterioplankton to Resource Availability , 2007, Applied and Environmental Microbiology.

[68]  A. Noyola,et al.  Effect of biological additives and micronutrients on the anaerobic digestion of physicochemical sludge. , 2005, Water science and technology : a journal of the International Association on Water Pollution Research.

[69]  A. Karlsson,et al.  Degradation of phenol under meso- and thermophilic, anaerobic conditions. , 1999, Anaerobe.

[70]  V. O’Flaherty,et al.  Assessment of anaerobic wastewater treatment failure using terminal restriction fragment length polymorphism analysis , 2005, Journal of applied microbiology.

[71]  Sangeun Oh,et al.  The relative effectiveness of pH control and heat treatment for enhancing biohydrogen gas production. , 2003, Environmental science & technology.

[72]  A. Eiler,et al.  Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. , 2004, Environmental microbiology.

[73]  Partha Basu,et al.  Arsenic and selenium in microbial metabolism. , 2006, Annual review of microbiology.

[74]  P. Lens,et al.  Trace Metals in Anaerobic Granular Sludge Reactors: Bioavailability and Dosing Strategies , 2006 .

[75]  L. Raskin,et al.  Diversity and dynamics of microbial communities in engineered environments and their implications for process stability. , 2003, Current opinion in biotechnology.

[76]  D. Boone,et al.  Diffusion of the Interspecies Electron Carriers H2 and Formate in Methanogenic Ecosystems and Its Implications in the Measurement of Km for H2 or Formate Uptake , 1989, Applied and environmental microbiology.

[77]  B. Ahring,et al.  Anaerobic digestion of manure and mixture of manure with lipids: biogas reactor performance and microbial community analysis. , 2003, Water science and technology : a journal of the International Association on Water Pollution Research.

[78]  C. Woese,et al.  Transfer of Methanolobus siciliae to the genus Methanosarcina, naming it Methanosarcina siciliae, and emendation of the genus Methanosarcina. , 1994, International journal of systematic bacteriology.