RamanNet: A generalized neural network architecture for Raman Spectrum Analysis

Raman spectroscopy provides a vibrational profile of the molecules and thus can be used to uniquely identify different kind of materials. This sort of fingerprinting molecules has thus led to widespread application of Raman spectrum in various fields like medical dignostics, forensics, mineralogy, bacteriology and virology etc. Despite the recent rise in Raman spectra data volume, there has not been any significant effort in developing generalized machine learning methods for Raman spectra analysis. We examine, experiment and evaluate existing methods and conjecture that neither current sequential models nor traditional machine learning models are satisfactorily sufficient to analyze Raman spectra. Both has their perks and pitfalls, therefore we attempt to mix the best of both worlds and propose a novel network architecture RamanNet. RamanNet is immune to invariance property in CNN and at the same time better than traditional machine learning models for the inclusion of sparse connectivity. Our experiments on 4 public datasets demonstrate superior performance over the much complex state-of-the-art methods and thus RamanNet has the potential to become the defacto standard in Raman spectra data analysis.

[1]  Yuanzhang Su,et al.  An efficient primary screening of COVID‐19 by serum Raman spectroscopy , 2021, Journal of Raman spectroscopy : JRS.

[2]  Quanshi Zhang,et al.  Visual interpretability for deep learning: a survey , 2018, Frontiers of Information Technology & Electronic Engineering.

[3]  James Philbin,et al.  FaceNet: A unified embedding for face recognition and clustering , 2015, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[4]  Tao Zhang,et al.  Tongue squamous cell carcinoma discrimination with Raman spectroscopy and convolutional neural networks , 2019, Vibrational Spectroscopy.

[5]  Andrew L. Maas Rectifier Nonlinearities Improve Neural Network Acoustic Models , 2013 .

[6]  Michel Verleysen,et al.  The Curse of Dimensionality in Data Mining and Time Series Prediction , 2005, IWANN.

[7]  D. W. O. HEDDLE,et al.  Raman Spectroscopy , 1967, Nature.

[8]  D. Mareš,et al.  Precise cancer detection via the combination of functionalized SERS surfaces and convolutional neural network with independent inputs , 2020 .

[9]  K. S. Krishnan,et al.  A New Type of Secondary Radiation , 1928, Nature.

[10]  Onur Avci,et al.  1-D Convolutional Neural Networks for Signal Processing Applications , 2019, ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

[11]  Jean-Francois Masson,et al.  Deep learning and artificial intelligence methods for Raman and surface-enhanced Raman scattering , 2020, TrAC Trends in Analytical Chemistry.

[12]  Robert T. Downs,et al.  The power of databases: The RRUFF project , 2016 .

[13]  Stefano Ermon,et al.  Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning , 2019, Nature Communications.

[14]  Hyeon-Joong Yoo,et al.  Deep Convolution Neural Networks in Computer Vision: a Review , 2015 .

[15]  Guigang Zhang,et al.  Deep Learning , 2016, Int. J. Semantic Comput..

[16]  D. Gardiner Introduction to Raman Scattering , 1989 .

[17]  Serkan Kiranyaz,et al.  EDITH : ECG Biometrics Aided by Deep Learning for Reliable Individual Authentication , 2021, IEEE Transactions on Emerging Topics in Computational Intelligence.

[18]  Yuan Yu,et al.  TensorFlow: A system for large-scale machine learning , 2016, OSDI.

[19]  Margarita Osadchy,et al.  Deep Convolutional Neural Networks for Raman Spectrum Recognition: A Unified Solution , 2017, The Analyst.

[20]  Scott Lundberg,et al.  A Unified Approach to Interpreting Model Predictions , 2017, NIPS.

[21]  Amith Khandakar,et al.  Reliable Tuberculosis Detection Using Chest X-Ray With Deep Learning, Segmentation and Visualization , 2020, IEEE Access.

[22]  Daniel Wolverson,et al.  Raman Techniques: Fundamentals and Frontiers , 2019, Nanoscale Research Letters.

[23]  Gordon G. Hammes,et al.  Spectroscopy for the Biological Sciences , 2005 .

[24]  Sergey Ioffe,et al.  Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift , 2015, ICML.