Evaluation of Multiband EPI Acquisitions for Resting State fMRI

Functional magnetic resonance imaging (fMRI) and particularly resting state fMRI (rs-fMRI) is widely used to investigate resting state brain networks (RSNs) on the systems level. Echo planar imaging (EPI) is the state-of-the-art imaging technique for most fMRI studies. Therefore, improvements of EPI might lead to increased sensitivity for a large amount of studies performed every day. A number of developments to shorten acquisition time have been recently proposed and the multiband technique, allowing the simultaneous acquisition of multiple slices yielding an equivalent reduction of measurement time, is the most promising among them. While the prospect to significantly reduce acquisition time by means of high multiband acceleration factors (M) appears tempting, signal quality parameters and the sensitivity to detect common RSNs with increasing M-factor have only been partially investigated up to now. In this study, we therefore acquired rs-fMRI data from 20 healthy volunteers to systematically investigate signal characteristics and sensitivity for brain network activity in datasets with increasing M-factor, M = 2 − 4. Combined with an inplane, sensitivity encoding (SENSE), acceleration factor, S = 2, we applied a maximal acceleration factor of 8 (S2×M4). Our results suggest that an M-factor of 2 (total acceleration of 4) only causes negligible SNR decrease but reveals common RSN with increased sensitivity and stability. Further M-factor increase produced random artifacts as revealed by signal quality measures that may affect interpretation of RSNs under common scanning conditions. Given appropriate hardware, a mb-EPI sequence with a total acceleration of 4 significantly reduces overall scanning time and clearly increases sensitivity to detect common RSNs. Together, our results suggest mb-EPI at moderate acceleration factors as a novel standard for fMRI that might increase our understanding of network dynamics in healthy and diseased brains.

[1]  Lawrence L. Wald,et al.  Effect of spatial smoothing on physiological noise in high-resolution fMRI , 2006, NeuroImage.

[2]  J. Polimeni,et al.  Blipped‐controlled aliasing in parallel imaging for simultaneous multislice echo planar imaging with reduced g‐factor penalty , 2012, Magnetic resonance in medicine.

[3]  Stephen M. Smith,et al.  Probabilistic independent component analysis for functional magnetic resonance imaging , 2004, IEEE Transactions on Medical Imaging.

[4]  S. Müller,et al.  Multifrequency selective rf pulses for multislice MR imaging , 1988, Magnetic resonance in medicine.

[5]  Rex E. Jung,et al.  A Baseline for the Multivariate Comparison of Resting-State Networks , 2011, Front. Syst. Neurosci..

[6]  Stephen M. Smith,et al.  A global optimisation method for robust affine registration of brain images , 2001, Medical Image Anal..

[7]  Peter J. Koopmans,et al.  Whole brain, high resolution multiband spin-echo EPI fMRI at 7T: A comparison with gradient-echo EPI using a color-word Stroop task , 2014, NeuroImage.

[8]  Lawrence L. Wald,et al.  Physiological noise and signal-to-noise ratio in fMRI with multi-channel array coils , 2011, NeuroImage.

[9]  Steen Moeller,et al.  Evaluation of slice accelerations using multiband echo planar imaging at 3T , 2013, NeuroImage.

[10]  P. Mansfield Multi-planar image formation using NMR spin echoes , 1977 .

[11]  Robin M Heidemann,et al.  Generalized autocalibrating partially parallel acquisitions (GRAPPA) , 2002, Magnetic resonance in medicine.

[12]  P. Boesiger,et al.  SENSE: Sensitivity encoding for fast MRI , 1999, Magnetic resonance in medicine.

[13]  Kuan J Lee,et al.  Simultaneous parallel inclined readout image technique. , 2006, Magnetic resonance imaging.

[14]  Stephen M. Smith,et al.  Multiplexed Echo Planar Imaging for Sub-Second Whole Brain FMRI and Fast Diffusion Imaging , 2010, PloS one.

[15]  P. Matthews,et al.  Distinct patterns of brain activity in young carriers of the APOE e4 allele , 2009, NeuroImage.

[16]  M. Greicius Resting-state functional connectivity in neuropsychiatric disorders , 2008, Current opinion in neurology.

[17]  Roland N. Boubela,et al.  The Spectral Diversity of Resting-State Fluctuations in the Human Brain , 2014, PloS one.

[18]  R. S. Hinks,et al.  Time course EPI of human brain function during task activation , 1992, Magnetic resonance in medicine.

[19]  Aapo Hyvärinen,et al.  Fast and robust fixed-point algorithms for independent component analysis , 1999, IEEE Trans. Neural Networks.

[20]  Steen Moeller,et al.  Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project , 2013, NeuroImage.

[21]  Robin M Heidemann,et al.  Controlled aliasing in parallel imaging results in higher acceleration (CAIPIRINHA) for multi‐slice imaging , 2005, Magnetic resonance in medicine.

[22]  M. Fox,et al.  Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging , 2007, Nature Reviews Neuroscience.

[23]  Kawin Setsompop,et al.  Ultra-fast MRI of the human brain with simultaneous multi-slice imaging. , 2013, Journal of magnetic resonance.

[24]  N. Filippini,et al.  Group comparison of resting-state FMRI data using multi-subject ICA and dual regression , 2009, NeuroImage.

[25]  Gary H. Glover,et al.  Fast algorithms for GS-model-based image reconstruction in data-sharing Fourier imaging , 2003, IEEE Transactions on Medical Imaging.

[26]  Nicole Seiberlich,et al.  Parallel MR imaging , 2012, Journal of magnetic resonance imaging : JMRI.

[27]  Yunjie Tong,et al.  Studying the Spatial Distribution of Physiological Effects on BOLD Signals Using Ultrafast fMRI , 2014, Front. Hum. Neurosci..

[28]  Lawrence L. Wald,et al.  Comparison of physiological noise at 1.5 T, 3 T and 7 T and optimization of fMRI acquisition parameters , 2005, NeuroImage.

[29]  R. Turner,et al.  Dynamic magnetic resonance imaging of human brain activity during primary sensory stimulation. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[30]  D. Larkman,et al.  Use of multicoil arrays for separation of signal from multiple slices simultaneously excited , 2001, Journal of magnetic resonance imaging : JMRI.

[31]  Roland N. Boubela,et al.  Beyond Noise: Using Temporal ICA to Extract Meaningful Information from High-Frequency fMRI Signal Fluctuations during Rest , 2013, Front. Hum. Neurosci..

[32]  G. Glover,et al.  Physiological noise in oxygenation‐sensitive magnetic resonance imaging , 2001, Magnetic resonance in medicine.

[33]  Christine Preibisch,et al.  Rapid single‐scan T  2* ‐mapping using exponential excitation pulses and image‐based correction for linear background gradients , 2009, Magnetic resonance in medicine.

[34]  S. Schoenberg,et al.  Measurement of signal‐to‐noise ratios in MR images: Influence of multichannel coils, parallel imaging, and reconstruction filters , 2007, Journal of magnetic resonance imaging : JMRI.

[35]  Martin Blaimer,et al.  General formulation for quantitative G‐factor calculation in GRAPPA reconstructions , 2009, Magnetic resonance in medicine.

[36]  G. Glover,et al.  Self‐navigated spiral fMRI: Interleaved versus single‐shot , 1998, Magnetic resonance in medicine.

[37]  Andrew A. Maudsley Multiple Line Scanning Spin Density Imaging , 1981 .

[38]  Steen Moeller,et al.  Evaluation of highly accelerated simultaneous multi-slice EPI for fMRI , 2015, NeuroImage.

[39]  Yunjie Tong,et al.  Short repetition time multiband echo‐planar imaging with simultaneous pulse recording allows dynamic imaging of the cardiac pulsation signal , 2014, Magnetic resonance in medicine.

[40]  Steen Moeller,et al.  Multiband multislice GE‐EPI at 7 tesla, with 16‐fold acceleration using partial parallel imaging with application to high spatial and temporal whole‐brain fMRI , 2010, Magnetic resonance in medicine.

[41]  Stephen M Smith,et al.  Fast robust automated brain extraction , 2002, Human brain mapping.

[42]  D. Feinberg,et al.  Halving MR imaging time by conjugation: demonstration at 3.5 kG. , 1986, Radiology.

[43]  Christine Preibisch,et al.  Functional MRI using sensitivity-encoded echo planar imaging (SENSE-EPI) , 2003, NeuroImage.

[44]  Sebastian Kozerke,et al.  MRI temporal acceleration techniques , 2012, Journal of magnetic resonance imaging : JMRI.

[45]  Michael Brady,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[46]  J. J. van Vaals,et al.  “Keyhole” method for accelerating imaging of contrast agent uptake , 1993, Journal of magnetic resonance imaging : JMRI.