Organellar proteomics to create the cell map.

[1]  J. S. Bader,et al.  A systems biology analysis of the Drosophila phagosome , 2007, Nature.

[2]  Bodo Grimbacher,et al.  A novel human primary immunodeficiency syndrome caused by deficiency of the endosomal adaptor protein p14 , 2007, Nature Medicine.

[3]  Daniel B. Martin,et al.  Computational prediction of proteotypic peptides for quantitative proteomics , 2007, Nature Biotechnology.

[4]  Robert E. Kearney,et al.  Quantitative Proteomics Analysis of the Secretory Pathway , 2006, Cell.

[5]  K. Lilley,et al.  Comparative proteomics of clathrin-coated vesicles , 2006, The Journal of cell biology.

[6]  Helmut Grubmüller,et al.  Molecular Anatomy of a Trafficking Organelle , 2006, Cell.

[7]  M. Mann,et al.  Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks , 2006, Cell.

[8]  Conrad Bessant,et al.  Quantitative proteomic approach to study subcellular localization of membrane proteins , 2006, Nature Protocols.

[9]  N. Samatova,et al.  Detecting differential and correlated protein expression in label-free shotgun proteomics. , 2006, Journal of proteome research.

[10]  P. Cresswell,et al.  A role for the endoplasmic reticulum protein retrotranslocation machinery during crosspresentation by dendritic cells. , 2006, Immunity.

[11]  I. Wada,et al.  Involvement of syntaxin 18, an endoplasmic reticulum (ER)-localized SNARE protein, in ER-mediated phagocytosis. , 2006, Molecular biology of the cell.

[12]  Rod B. Watson,et al.  Mapping the Arabidopsis organelle proteome. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[13]  Xiaohui S. Xie,et al.  A Mammalian Organelle Map by Protein Correlation Profiling , 2006, Cell.

[14]  Michelle S. Scott,et al.  Global Survey of Organ and Organelle Protein Expression in Mouse: Combined Proteomic and Transcriptomic Profiling , 2006, Cell.

[15]  J. Bergeron,et al.  Isolation of Rough and Smooth Membrane Domains of the Endoplasmic Reticulum from Rat Liver , 2006 .

[16]  T. Nilsson,et al.  Purification of COPI Vesicles , 2006 .

[17]  S. Munro,et al.  Organelle identity and the signposts for membrane traffic , 2005, Nature.

[18]  S. Grinstein,et al.  Quantitative and Dynamic Assessment of the Contribution of the ER to Phagosome Formation , 2005, Cell.

[19]  K. Resing,et al.  Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics*S , 2005, Molecular & Cellular Proteomics.

[20]  J. Yates,et al.  Proteomics of organelles and large cellular structures , 2005, Nature Reviews Molecular Cell Biology.

[21]  Michael K. Coleman,et al.  Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling. , 2005, Analytical chemistry.

[22]  P. McPherson,et al.  Non-stoichiometric Relationship between Clathrin Heavy and Light Chains Revealed by Quantitative Comparative Proteomics of Clathrin-coated Vesicles from Brain and Liver*S , 2005, Molecular & Cellular Proteomics.

[23]  Mark S Friedrichs,et al.  Guidelines for the Routine Application of the Peptide Hits Technique , 2005, Journal of the American Society for Mass Spectrometry.

[24]  S. Schmid,et al.  CVAK104 Is a Novel Poly-l-lysine-stimulated Kinase That Targets the β2-Subunit of AP2* , 2005, Journal of Biological Chemistry.

[25]  J. Rothman,et al.  Differential use of endoplasmic reticulum membrane for phagocytosis in J774 macrophages. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Andrew Emili,et al.  Integrating gene and protein expression data: pattern analysis and profile mining. , 2005, Methods.

[27]  Ronald J Moore,et al.  Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry , 2005, Proteomics.

[28]  K. Parker,et al.  Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents*S , 2004, Molecular & Cellular Proteomics.

[29]  P. McPherson,et al.  Molecular mechanisms in clathrin-mediated membrane budding revealed through subcellular proteomics. , 2004, Biochemical Society transactions.

[30]  Rod B. Watson,et al.  Localization of Organelle Proteins by Isotope Tagging (LOPIT)*S , 2004, Molecular & Cellular Proteomics.

[31]  J. Yates,et al.  A model for random sampling and estimation of relative protein abundance in shotgun proteomics. , 2004, Analytical chemistry.

[32]  M. Cygler,et al.  The Structure of the MAPK Scaffold, MP1, Bound to Its Partner, p14 , 2004, Journal of Biological Chemistry.

[33]  Lisa M. D'Souza,et al.  Genome sequence of the Brown Norway rat yields insights into mammalian evolution , 2004, Nature.

[34]  Alexander W Bell,et al.  Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[35]  Etienne Gagnon,et al.  Organelle proteomics: looking at less to see more. , 2004, Drug discovery today.

[36]  Mark S Friedrichs,et al.  Changes in the protein expression of yeast as a function of carbon source. , 2003, Journal of proteome research.

[37]  J. Davoust,et al.  ER–phagosome fusion defines an MHC class I cross-presentation compartment in dendritic cells , 2003, Nature.

[38]  Etienne Gagnon,et al.  Phagosomes are competent organelles for antigen cross-presentation , 2003, Nature.

[39]  D. Teis,et al.  Localization of the MP1-MAPK scaffold complex to endosomes is mediated by p14 and required for signal transduction. , 2002, Developmental cell.

[40]  M. Mann,et al.  Large-scale Proteomic Analysis of the Human Spliceosome References , 2006 .

[41]  Etienne Gagnon,et al.  Endoplasmic Reticulum-Mediated Phagocytosis Is a Mechanism of Entry into Macrophages , 2002, Cell.

[42]  J. X. Pang,et al.  Biomarker discovery in urine by proteomics. , 2002, Journal of proteome research.

[43]  A. Pfeifer,et al.  A Novel 14-Kilodalton Protein Interacts with the Mitogen-Activated Protein Kinase Scaffold Mp1 on a Late Endosomal/Lysosomal Compartment , 2001, The Journal of cell biology.

[44]  Etienne Gagnon,et al.  The Phagosome Proteome: Insight into Phagosome Functions , 2001 .

[45]  J. Rothman,et al.  The Debate about Transport in the Golgi—Two Sides of the Same Coin? , 2000, Cell.

[46]  J. E. Celis,et al.  Cell Biology: A Laboratory Handbook , 1997 .

[47]  G. M. Di Guglielmo,et al.  Compartmentalized signal transduction by receptor tyrosine kinases. , 1995, Trends in cell biology.

[48]  K. Howell,et al.  Hepatic Golgi fractions resolved into membrane and content subfractions , 1982, The Journal of cell biology.